data_3EXV # _entry.id 3EXV # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.389 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3EXV pdb_00003exv 10.2210/pdb3exv/pdb RCSB RCSB049903 ? ? WWPDB D_1000049903 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-11-25 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2018-01-24 4 'Structure model' 1 3 2023-12-27 5 'Structure model' 1 4 2024-04-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Structure summary' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' audit_author 2 4 'Structure model' chem_comp_atom 3 4 'Structure model' chem_comp_bond 4 4 'Structure model' database_2 5 4 'Structure model' struct_ref_seq_dif 6 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_audit_author.name' 2 4 'Structure model' '_database_2.pdbx_DOI' 3 4 'Structure model' '_database_2.pdbx_database_accession' 4 4 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3EXV _pdbx_database_status.recvd_initial_deposition_date 2008-10-17 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2O39 'Human Adenovirus type 11 knob in complex with domains SCR1 and SCR2 of CD46 (membrane cofactor protein, MCP)' unspecified PDB 2QLK 'Adenovirus AD35 fibre head' unspecified PDB 3BQ4 'Crystal Structure of Ad35 fiber knob' unspecified PDB 1KNB 'CRYSTAL STRUCTURE OF THE RECEPTOR-BINDING DOMAIN OF ADENOVIRUS TYPE 5 FIBER PROTEIN AT 1.7 ANGSTROMS RESOLUTION' unspecified PDB 3EXW . unspecified PDB 3FOY . unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Persson, B.D.' 1 'Reiter, D.M.' 2 'Arnberg, N.' 3 'Stehle, T.' 4 # _citation.id primary _citation.title 'An arginine switch in the species B adenovirus knob determines high-affinity engagement of cellular receptor CD46' _citation.journal_abbrev J.Virol. _citation.journal_volume 83 _citation.page_first 673 _citation.page_last 686 _citation.year 2009 _citation.journal_id_ASTM JOVIAM _citation.country US _citation.journal_id_ISSN 0022-538X _citation.journal_id_CSD 0825 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18987134 _citation.pdbx_database_id_DOI 10.1128/JVI.01967-08 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Persson, B.D.' 1 ? primary 'Muller, S.' 2 ? primary 'Reiter, D.M.' 3 ? primary 'Schmitt, B.B.' 4 ? primary 'Marttila, M.' 5 ? primary 'Sumowski, C.V.' 6 ? primary 'Schweizer, S.' 7 ? primary 'Scheu, U.' 8 ? primary 'Ochsenfeld, C.' 9 ? primary 'Arnberg, N.' 10 ? primary 'Stehle, T.' 11 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Fiber protein' 23752.438 1 ? ? 'residues 117-325' ? 2 water nat water 18.015 185 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name pIV # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSHMGLTFNSNNICIDDNINTLWTGVNPTEANCQIMNSSESNDCKLILTLVKTGALVTAFVYVIGVSNNFNMLTTHRNIN FTAELFFDSTGNLLTRLSSLKTPLNHKSGQNMATGAITNAKGFMPSTTAYPFNDNSREKENYIYGTCYYTASDRTAFPID ISVMLNRRAINDETSYCIRITWSWNTGDAPEVQTSATTLVTSPFTFYYIREDD ; _entity_poly.pdbx_seq_one_letter_code_can ;GSHMGLTFNSNNICIDDNINTLWTGVNPTEANCQIMNSSESNDCKLILTLVKTGALVTAFVYVIGVSNNFNMLTTHRNIN FTAELFFDSTGNLLTRLSSLKTPLNHKSGQNMATGAITNAKGFMPSTTAYPFNDNSREKENYIYGTCYYTASDRTAFPID ISVMLNRRAINDETSYCIRITWSWNTGDAPEVQTSATTLVTSPFTFYYIREDD ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 HIS n 1 4 MET n 1 5 GLY n 1 6 LEU n 1 7 THR n 1 8 PHE n 1 9 ASN n 1 10 SER n 1 11 ASN n 1 12 ASN n 1 13 ILE n 1 14 CYS n 1 15 ILE n 1 16 ASP n 1 17 ASP n 1 18 ASN n 1 19 ILE n 1 20 ASN n 1 21 THR n 1 22 LEU n 1 23 TRP n 1 24 THR n 1 25 GLY n 1 26 VAL n 1 27 ASN n 1 28 PRO n 1 29 THR n 1 30 GLU n 1 31 ALA n 1 32 ASN n 1 33 CYS n 1 34 GLN n 1 35 ILE n 1 36 MET n 1 37 ASN n 1 38 SER n 1 39 SER n 1 40 GLU n 1 41 SER n 1 42 ASN n 1 43 ASP n 1 44 CYS n 1 45 LYS n 1 46 LEU n 1 47 ILE n 1 48 LEU n 1 49 THR n 1 50 LEU n 1 51 VAL n 1 52 LYS n 1 53 THR n 1 54 GLY n 1 55 ALA n 1 56 LEU n 1 57 VAL n 1 58 THR n 1 59 ALA n 1 60 PHE n 1 61 VAL n 1 62 TYR n 1 63 VAL n 1 64 ILE n 1 65 GLY n 1 66 VAL n 1 67 SER n 1 68 ASN n 1 69 ASN n 1 70 PHE n 1 71 ASN n 1 72 MET n 1 73 LEU n 1 74 THR n 1 75 THR n 1 76 HIS n 1 77 ARG n 1 78 ASN n 1 79 ILE n 1 80 ASN n 1 81 PHE n 1 82 THR n 1 83 ALA n 1 84 GLU n 1 85 LEU n 1 86 PHE n 1 87 PHE n 1 88 ASP n 1 89 SER n 1 90 THR n 1 91 GLY n 1 92 ASN n 1 93 LEU n 1 94 LEU n 1 95 THR n 1 96 ARG n 1 97 LEU n 1 98 SER n 1 99 SER n 1 100 LEU n 1 101 LYS n 1 102 THR n 1 103 PRO n 1 104 LEU n 1 105 ASN n 1 106 HIS n 1 107 LYS n 1 108 SER n 1 109 GLY n 1 110 GLN n 1 111 ASN n 1 112 MET n 1 113 ALA n 1 114 THR n 1 115 GLY n 1 116 ALA n 1 117 ILE n 1 118 THR n 1 119 ASN n 1 120 ALA n 1 121 LYS n 1 122 GLY n 1 123 PHE n 1 124 MET n 1 125 PRO n 1 126 SER n 1 127 THR n 1 128 THR n 1 129 ALA n 1 130 TYR n 1 131 PRO n 1 132 PHE n 1 133 ASN n 1 134 ASP n 1 135 ASN n 1 136 SER n 1 137 ARG n 1 138 GLU n 1 139 LYS n 1 140 GLU n 1 141 ASN n 1 142 TYR n 1 143 ILE n 1 144 TYR n 1 145 GLY n 1 146 THR n 1 147 CYS n 1 148 TYR n 1 149 TYR n 1 150 THR n 1 151 ALA n 1 152 SER n 1 153 ASP n 1 154 ARG n 1 155 THR n 1 156 ALA n 1 157 PHE n 1 158 PRO n 1 159 ILE n 1 160 ASP n 1 161 ILE n 1 162 SER n 1 163 VAL n 1 164 MET n 1 165 LEU n 1 166 ASN n 1 167 ARG n 1 168 ARG n 1 169 ALA n 1 170 ILE n 1 171 ASN n 1 172 ASP n 1 173 GLU n 1 174 THR n 1 175 SER n 1 176 TYR n 1 177 CYS n 1 178 ILE n 1 179 ARG n 1 180 ILE n 1 181 THR n 1 182 TRP n 1 183 SER n 1 184 TRP n 1 185 ASN n 1 186 THR n 1 187 GLY n 1 188 ASP n 1 189 ALA n 1 190 PRO n 1 191 GLU n 1 192 VAL n 1 193 GLN n 1 194 THR n 1 195 SER n 1 196 ALA n 1 197 THR n 1 198 THR n 1 199 LEU n 1 200 VAL n 1 201 THR n 1 202 SER n 1 203 PRO n 1 204 PHE n 1 205 THR n 1 206 PHE n 1 207 TYR n 1 208 TYR n 1 209 ILE n 1 210 ARG n 1 211 GLU n 1 212 ASP n 1 213 ASP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene PIV _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain Slobiski _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Human adenovirus B' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 108098 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'Rosetta DE3' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET15b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 113 ? ? ? A . n A 1 2 SER 2 114 ? ? ? A . n A 1 3 HIS 3 115 ? ? ? A . n A 1 4 MET 4 116 ? ? ? A . n A 1 5 GLY 5 117 ? ? ? A . n A 1 6 LEU 6 118 ? ? ? A . n A 1 7 THR 7 119 ? ? ? A . n A 1 8 PHE 8 120 ? ? ? A . n A 1 9 ASN 9 121 ? ? ? A . n A 1 10 SER 10 122 ? ? ? A . n A 1 11 ASN 11 123 ? ? ? A . n A 1 12 ASN 12 124 ? ? ? A . n A 1 13 ILE 13 125 ? ? ? A . n A 1 14 CYS 14 126 ? ? ? A . n A 1 15 ILE 15 127 ? ? ? A . n A 1 16 ASP 16 128 ? ? ? A . n A 1 17 ASP 17 129 129 ASP ASP A . n A 1 18 ASN 18 130 130 ASN ASN A . n A 1 19 ILE 19 131 131 ILE ILE A . n A 1 20 ASN 20 132 132 ASN ASN A . n A 1 21 THR 21 133 133 THR THR A . n A 1 22 LEU 22 134 134 LEU LEU A . n A 1 23 TRP 23 135 135 TRP TRP A . n A 1 24 THR 24 136 136 THR THR A . n A 1 25 GLY 25 137 137 GLY GLY A . n A 1 26 VAL 26 138 138 VAL VAL A . n A 1 27 ASN 27 139 139 ASN ASN A . n A 1 28 PRO 28 140 140 PRO PRO A . n A 1 29 THR 29 141 141 THR THR A . n A 1 30 GLU 30 142 142 GLU GLU A . n A 1 31 ALA 31 143 143 ALA ALA A . n A 1 32 ASN 32 144 144 ASN ASN A . n A 1 33 CYS 33 145 145 CYS CYS A . n A 1 34 GLN 34 146 146 GLN GLN A . n A 1 35 ILE 35 147 147 ILE ILE A . n A 1 36 MET 36 148 148 MET MET A . n A 1 37 ASN 37 149 149 ASN ASN A . n A 1 38 SER 38 150 150 SER SER A . n A 1 39 SER 39 151 151 SER SER A . n A 1 40 GLU 40 152 152 GLU GLU A . n A 1 41 SER 41 153 153 SER SER A . n A 1 42 ASN 42 154 154 ASN ASN A . n A 1 43 ASP 43 155 155 ASP ASP A . n A 1 44 CYS 44 156 156 CYS CYS A . n A 1 45 LYS 45 157 157 LYS LYS A . n A 1 46 LEU 46 158 158 LEU LEU A . n A 1 47 ILE 47 159 159 ILE ILE A . n A 1 48 LEU 48 160 160 LEU LEU A . n A 1 49 THR 49 161 161 THR THR A . n A 1 50 LEU 50 162 162 LEU LEU A . n A 1 51 VAL 51 163 163 VAL VAL A . n A 1 52 LYS 52 164 164 LYS LYS A . n A 1 53 THR 53 165 165 THR THR A . n A 1 54 GLY 54 166 166 GLY GLY A . n A 1 55 ALA 55 167 167 ALA ALA A . n A 1 56 LEU 56 168 168 LEU LEU A . n A 1 57 VAL 57 169 169 VAL VAL A . n A 1 58 THR 58 170 170 THR THR A . n A 1 59 ALA 59 171 171 ALA ALA A . n A 1 60 PHE 60 172 172 PHE PHE A . n A 1 61 VAL 61 173 173 VAL VAL A . n A 1 62 TYR 62 174 174 TYR TYR A . n A 1 63 VAL 63 175 175 VAL VAL A . n A 1 64 ILE 64 176 176 ILE ILE A . n A 1 65 GLY 65 177 177 GLY GLY A . n A 1 66 VAL 66 178 178 VAL VAL A . n A 1 67 SER 67 179 179 SER SER A . n A 1 68 ASN 68 180 180 ASN ASN A . n A 1 69 ASN 69 181 181 ASN ASN A . n A 1 70 PHE 70 182 182 PHE PHE A . n A 1 71 ASN 71 183 183 ASN ASN A . n A 1 72 MET 72 184 184 MET MET A . n A 1 73 LEU 73 185 185 LEU LEU A . n A 1 74 THR 74 186 186 THR THR A . n A 1 75 THR 75 187 187 THR THR A . n A 1 76 HIS 76 188 188 HIS HIS A . n A 1 77 ARG 77 189 189 ARG ARG A . n A 1 78 ASN 78 190 190 ASN ASN A . n A 1 79 ILE 79 191 191 ILE ILE A . n A 1 80 ASN 80 192 192 ASN ASN A . n A 1 81 PHE 81 193 193 PHE PHE A . n A 1 82 THR 82 194 194 THR THR A . n A 1 83 ALA 83 195 195 ALA ALA A . n A 1 84 GLU 84 196 196 GLU GLU A . n A 1 85 LEU 85 197 197 LEU LEU A . n A 1 86 PHE 86 198 198 PHE PHE A . n A 1 87 PHE 87 199 199 PHE PHE A . n A 1 88 ASP 88 200 200 ASP ASP A . n A 1 89 SER 89 201 201 SER SER A . n A 1 90 THR 90 202 202 THR THR A . n A 1 91 GLY 91 203 203 GLY GLY A . n A 1 92 ASN 92 204 204 ASN ASN A . n A 1 93 LEU 93 205 205 LEU LEU A . n A 1 94 LEU 94 206 206 LEU LEU A . n A 1 95 THR 95 207 207 THR THR A . n A 1 96 ARG 96 208 208 ARG ARG A . n A 1 97 LEU 97 209 209 LEU LEU A . n A 1 98 SER 98 210 210 SER SER A . n A 1 99 SER 99 211 211 SER SER A . n A 1 100 LEU 100 212 212 LEU LEU A . n A 1 101 LYS 101 213 213 LYS LYS A . n A 1 102 THR 102 214 214 THR THR A . n A 1 103 PRO 103 215 215 PRO PRO A . n A 1 104 LEU 104 216 216 LEU LEU A . n A 1 105 ASN 105 217 217 ASN ASN A . n A 1 106 HIS 106 218 218 HIS HIS A . n A 1 107 LYS 107 219 219 LYS LYS A . n A 1 108 SER 108 220 220 SER SER A . n A 1 109 GLY 109 221 221 GLY GLY A . n A 1 110 GLN 110 222 222 GLN GLN A . n A 1 111 ASN 111 223 223 ASN ASN A . n A 1 112 MET 112 224 224 MET MET A . n A 1 113 ALA 113 225 225 ALA ALA A . n A 1 114 THR 114 226 226 THR THR A . n A 1 115 GLY 115 227 227 GLY GLY A . n A 1 116 ALA 116 228 228 ALA ALA A . n A 1 117 ILE 117 229 229 ILE ILE A . n A 1 118 THR 118 230 230 THR THR A . n A 1 119 ASN 119 231 231 ASN ASN A . n A 1 120 ALA 120 232 232 ALA ALA A . n A 1 121 LYS 121 233 233 LYS LYS A . n A 1 122 GLY 122 234 234 GLY GLY A . n A 1 123 PHE 123 235 235 PHE PHE A . n A 1 124 MET 124 236 236 MET MET A . n A 1 125 PRO 125 237 237 PRO PRO A . n A 1 126 SER 126 238 238 SER SER A . n A 1 127 THR 127 239 239 THR THR A . n A 1 128 THR 128 240 240 THR THR A . n A 1 129 ALA 129 241 241 ALA ALA A . n A 1 130 TYR 130 242 242 TYR TYR A . n A 1 131 PRO 131 243 243 PRO PRO A . n A 1 132 PHE 132 244 244 PHE PHE A . n A 1 133 ASN 133 245 245 ASN ASN A . n A 1 134 ASP 134 246 246 ASP ASP A . n A 1 135 ASN 135 247 247 ASN ASN A . n A 1 136 SER 136 248 248 SER SER A . n A 1 137 ARG 137 249 249 ARG ARG A . n A 1 138 GLU 138 250 250 GLU GLU A . n A 1 139 LYS 139 251 251 LYS LYS A . n A 1 140 GLU 140 252 252 GLU GLU A . n A 1 141 ASN 141 253 253 ASN ASN A . n A 1 142 TYR 142 254 254 TYR TYR A . n A 1 143 ILE 143 255 255 ILE ILE A . n A 1 144 TYR 144 256 256 TYR TYR A . n A 1 145 GLY 145 257 257 GLY GLY A . n A 1 146 THR 146 258 258 THR THR A . n A 1 147 CYS 147 259 259 CYS CYS A . n A 1 148 TYR 148 260 260 TYR TYR A . n A 1 149 TYR 149 261 261 TYR TYR A . n A 1 150 THR 150 262 262 THR THR A . n A 1 151 ALA 151 263 263 ALA ALA A . n A 1 152 SER 152 264 264 SER SER A . n A 1 153 ASP 153 265 265 ASP ASP A . n A 1 154 ARG 154 266 266 ARG ARG A . n A 1 155 THR 155 267 267 THR THR A . n A 1 156 ALA 156 268 268 ALA ALA A . n A 1 157 PHE 157 269 269 PHE PHE A . n A 1 158 PRO 158 270 270 PRO PRO A . n A 1 159 ILE 159 271 271 ILE ILE A . n A 1 160 ASP 160 272 272 ASP ASP A . n A 1 161 ILE 161 273 273 ILE ILE A . n A 1 162 SER 162 274 274 SER SER A . n A 1 163 VAL 163 275 275 VAL VAL A . n A 1 164 MET 164 276 276 MET MET A . n A 1 165 LEU 165 277 277 LEU LEU A . n A 1 166 ASN 166 278 278 ASN ASN A . n A 1 167 ARG 167 279 279 ARG ARG A . n A 1 168 ARG 168 280 280 ARG ARG A . n A 1 169 ALA 169 281 281 ALA ALA A . n A 1 170 ILE 170 282 282 ILE ILE A . n A 1 171 ASN 171 283 283 ASN ASN A . n A 1 172 ASP 172 284 284 ASP ASP A . n A 1 173 GLU 173 285 285 GLU GLU A . n A 1 174 THR 174 286 286 THR THR A . n A 1 175 SER 175 287 287 SER SER A . n A 1 176 TYR 176 288 288 TYR TYR A . n A 1 177 CYS 177 289 289 CYS CYS A . n A 1 178 ILE 178 290 290 ILE ILE A . n A 1 179 ARG 179 291 291 ARG ARG A . n A 1 180 ILE 180 292 292 ILE ILE A . n A 1 181 THR 181 293 293 THR THR A . n A 1 182 TRP 182 294 294 TRP TRP A . n A 1 183 SER 183 295 295 SER SER A . n A 1 184 TRP 184 296 296 TRP TRP A . n A 1 185 ASN 185 297 297 ASN ASN A . n A 1 186 THR 186 298 298 THR THR A . n A 1 187 GLY 187 299 299 GLY GLY A . n A 1 188 ASP 188 300 300 ASP ASP A . n A 1 189 ALA 189 301 301 ALA ALA A . n A 1 190 PRO 190 302 302 PRO PRO A . n A 1 191 GLU 191 303 303 GLU GLU A . n A 1 192 VAL 192 304 304 VAL VAL A . n A 1 193 GLN 193 305 305 GLN GLN A . n A 1 194 THR 194 306 306 THR THR A . n A 1 195 SER 195 307 307 SER SER A . n A 1 196 ALA 196 308 308 ALA ALA A . n A 1 197 THR 197 309 309 THR THR A . n A 1 198 THR 198 310 310 THR THR A . n A 1 199 LEU 199 311 311 LEU LEU A . n A 1 200 VAL 200 312 312 VAL VAL A . n A 1 201 THR 201 313 313 THR THR A . n A 1 202 SER 202 314 314 SER SER A . n A 1 203 PRO 203 315 315 PRO PRO A . n A 1 204 PHE 204 316 316 PHE PHE A . n A 1 205 THR 205 317 317 THR THR A . n A 1 206 PHE 206 318 318 PHE PHE A . n A 1 207 TYR 207 319 319 TYR TYR A . n A 1 208 TYR 208 320 320 TYR TYR A . n A 1 209 ILE 209 321 321 ILE ILE A . n A 1 210 ARG 210 322 322 ARG ARG A . n A 1 211 GLU 211 323 323 GLU GLU A . n A 1 212 ASP 212 324 324 ASP ASP A . n A 1 213 ASP 213 325 325 ASP ASP A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 1 1 HOH HOH A . B 2 HOH 2 2 2 HOH HOH A . B 2 HOH 3 3 3 HOH HOH A . B 2 HOH 4 4 4 HOH HOH A . B 2 HOH 5 5 5 HOH HOH A . B 2 HOH 6 6 6 HOH HOH A . B 2 HOH 7 7 7 HOH HOH A . B 2 HOH 8 8 8 HOH HOH A . B 2 HOH 9 9 9 HOH HOH A . B 2 HOH 10 10 10 HOH HOH A . B 2 HOH 11 11 11 HOH HOH A . B 2 HOH 12 12 12 HOH HOH A . B 2 HOH 13 13 13 HOH HOH A . B 2 HOH 14 14 14 HOH HOH A . B 2 HOH 15 15 15 HOH HOH A . B 2 HOH 16 16 16 HOH HOH A . B 2 HOH 17 17 17 HOH HOH A . B 2 HOH 18 18 18 HOH HOH A . B 2 HOH 19 19 19 HOH HOH A . B 2 HOH 20 20 20 HOH HOH A . B 2 HOH 21 21 21 HOH HOH A . B 2 HOH 22 22 22 HOH HOH A . B 2 HOH 23 23 23 HOH HOH A . B 2 HOH 24 24 24 HOH HOH A . B 2 HOH 25 25 25 HOH HOH A . B 2 HOH 26 26 26 HOH HOH A . B 2 HOH 27 27 27 HOH HOH A . B 2 HOH 28 28 28 HOH HOH A . B 2 HOH 29 29 29 HOH HOH A . B 2 HOH 30 30 30 HOH HOH A . B 2 HOH 31 31 31 HOH HOH A . B 2 HOH 32 32 32 HOH HOH A . B 2 HOH 33 33 33 HOH HOH A . B 2 HOH 34 34 34 HOH HOH A . B 2 HOH 35 35 35 HOH HOH A . B 2 HOH 36 36 36 HOH HOH A . B 2 HOH 37 37 37 HOH HOH A . B 2 HOH 38 38 38 HOH HOH A . B 2 HOH 39 39 39 HOH HOH A . B 2 HOH 40 40 40 HOH HOH A . B 2 HOH 41 41 41 HOH HOH A . B 2 HOH 42 42 42 HOH HOH A . B 2 HOH 43 43 43 HOH HOH A . B 2 HOH 44 44 44 HOH HOH A . B 2 HOH 45 45 45 HOH HOH A . B 2 HOH 46 46 46 HOH HOH A . B 2 HOH 47 47 47 HOH HOH A . B 2 HOH 48 48 48 HOH HOH A . B 2 HOH 49 49 49 HOH HOH A . B 2 HOH 50 50 50 HOH HOH A . B 2 HOH 51 51 51 HOH HOH A . B 2 HOH 52 52 52 HOH HOH A . B 2 HOH 53 53 53 HOH HOH A . B 2 HOH 54 54 54 HOH HOH A . B 2 HOH 55 55 55 HOH HOH A . B 2 HOH 56 56 56 HOH HOH A . B 2 HOH 57 57 57 HOH HOH A . B 2 HOH 58 58 58 HOH HOH A . B 2 HOH 59 59 59 HOH HOH A . B 2 HOH 60 60 60 HOH HOH A . B 2 HOH 61 61 61 HOH HOH A . B 2 HOH 62 62 62 HOH HOH A . B 2 HOH 63 63 63 HOH HOH A . B 2 HOH 64 64 64 HOH HOH A . B 2 HOH 65 65 65 HOH HOH A . B 2 HOH 66 66 66 HOH HOH A . B 2 HOH 67 67 67 HOH HOH A . B 2 HOH 68 68 68 HOH HOH A . B 2 HOH 69 69 69 HOH HOH A . B 2 HOH 70 70 70 HOH HOH A . B 2 HOH 71 71 71 HOH HOH A . B 2 HOH 72 72 72 HOH HOH A . B 2 HOH 73 73 73 HOH HOH A . B 2 HOH 74 74 74 HOH HOH A . B 2 HOH 75 75 75 HOH HOH A . B 2 HOH 76 76 76 HOH HOH A . B 2 HOH 77 77 77 HOH HOH A . B 2 HOH 78 78 78 HOH HOH A . B 2 HOH 79 79 79 HOH HOH A . B 2 HOH 80 80 80 HOH HOH A . B 2 HOH 81 81 81 HOH HOH A . B 2 HOH 82 82 82 HOH HOH A . B 2 HOH 83 83 83 HOH HOH A . B 2 HOH 84 84 84 HOH HOH A . B 2 HOH 85 85 85 HOH HOH A . B 2 HOH 86 86 86 HOH HOH A . B 2 HOH 87 87 87 HOH HOH A . B 2 HOH 88 88 88 HOH HOH A . B 2 HOH 89 89 89 HOH HOH A . B 2 HOH 90 90 90 HOH HOH A . B 2 HOH 91 91 91 HOH HOH A . B 2 HOH 92 92 92 HOH HOH A . B 2 HOH 93 93 93 HOH HOH A . B 2 HOH 94 94 94 HOH HOH A . B 2 HOH 95 95 95 HOH HOH A . B 2 HOH 96 96 96 HOH HOH A . B 2 HOH 97 97 97 HOH HOH A . B 2 HOH 98 98 98 HOH HOH A . B 2 HOH 99 99 99 HOH HOH A . B 2 HOH 100 100 100 HOH HOH A . B 2 HOH 101 101 101 HOH HOH A . B 2 HOH 102 102 102 HOH HOH A . B 2 HOH 103 103 103 HOH HOH A . B 2 HOH 104 104 104 HOH HOH A . B 2 HOH 105 105 105 HOH HOH A . B 2 HOH 106 106 106 HOH HOH A . B 2 HOH 107 107 107 HOH HOH A . B 2 HOH 108 108 108 HOH HOH A . B 2 HOH 109 109 109 HOH HOH A . B 2 HOH 110 110 110 HOH HOH A . B 2 HOH 111 111 111 HOH HOH A . B 2 HOH 112 112 112 HOH HOH A . B 2 HOH 113 326 113 HOH HOH A . B 2 HOH 114 327 114 HOH HOH A . B 2 HOH 115 328 115 HOH HOH A . B 2 HOH 116 329 116 HOH HOH A . B 2 HOH 117 330 117 HOH HOH A . B 2 HOH 118 331 118 HOH HOH A . B 2 HOH 119 332 119 HOH HOH A . B 2 HOH 120 333 120 HOH HOH A . B 2 HOH 121 334 121 HOH HOH A . B 2 HOH 122 335 122 HOH HOH A . B 2 HOH 123 336 123 HOH HOH A . B 2 HOH 124 337 124 HOH HOH A . B 2 HOH 125 338 125 HOH HOH A . B 2 HOH 126 339 126 HOH HOH A . B 2 HOH 127 340 127 HOH HOH A . B 2 HOH 128 341 128 HOH HOH A . B 2 HOH 129 342 129 HOH HOH A . B 2 HOH 130 343 130 HOH HOH A . B 2 HOH 131 344 131 HOH HOH A . B 2 HOH 132 345 132 HOH HOH A . B 2 HOH 133 346 133 HOH HOH A . B 2 HOH 134 347 134 HOH HOH A . B 2 HOH 135 348 135 HOH HOH A . B 2 HOH 136 349 136 HOH HOH A . B 2 HOH 137 350 137 HOH HOH A . B 2 HOH 138 351 138 HOH HOH A . B 2 HOH 139 352 139 HOH HOH A . B 2 HOH 140 353 140 HOH HOH A . B 2 HOH 141 354 141 HOH HOH A . B 2 HOH 142 355 142 HOH HOH A . B 2 HOH 143 356 143 HOH HOH A . B 2 HOH 144 357 144 HOH HOH A . B 2 HOH 145 358 145 HOH HOH A . B 2 HOH 146 359 146 HOH HOH A . B 2 HOH 147 360 147 HOH HOH A . B 2 HOH 148 361 148 HOH HOH A . B 2 HOH 149 362 149 HOH HOH A . B 2 HOH 150 363 150 HOH HOH A . B 2 HOH 151 364 151 HOH HOH A . B 2 HOH 152 365 152 HOH HOH A . B 2 HOH 153 366 153 HOH HOH A . B 2 HOH 154 367 154 HOH HOH A . B 2 HOH 155 368 155 HOH HOH A . B 2 HOH 156 369 156 HOH HOH A . B 2 HOH 157 370 157 HOH HOH A . B 2 HOH 158 371 158 HOH HOH A . B 2 HOH 159 372 159 HOH HOH A . B 2 HOH 160 373 160 HOH HOH A . B 2 HOH 161 374 161 HOH HOH A . B 2 HOH 162 375 162 HOH HOH A . B 2 HOH 163 376 163 HOH HOH A . B 2 HOH 164 377 164 HOH HOH A . B 2 HOH 165 378 165 HOH HOH A . B 2 HOH 166 379 166 HOH HOH A . B 2 HOH 167 380 167 HOH HOH A . B 2 HOH 168 381 168 HOH HOH A . B 2 HOH 169 382 169 HOH HOH A . B 2 HOH 170 383 170 HOH HOH A . B 2 HOH 171 384 171 HOH HOH A . B 2 HOH 172 385 172 HOH HOH A . B 2 HOH 173 386 173 HOH HOH A . B 2 HOH 174 387 175 HOH HOH A . B 2 HOH 175 388 176 HOH HOH A . B 2 HOH 176 389 177 HOH HOH A . B 2 HOH 177 390 178 HOH HOH A . B 2 HOH 178 391 179 HOH HOH A . B 2 HOH 179 392 180 HOH HOH A . B 2 HOH 180 393 181 HOH HOH A . B 2 HOH 181 394 183 HOH HOH A . B 2 HOH 182 395 184 HOH HOH A . B 2 HOH 183 396 185 HOH HOH A . B 2 HOH 184 397 186 HOH HOH A . B 2 HOH 185 398 188 HOH HOH A . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MAR345dtb 'data collection' . ? 1 AMoRE phasing . ? 2 REFMAC refinement 5.0 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # _cell.entry_id 3EXV _cell.length_a 100.597 _cell.length_b 100.597 _cell.length_c 100.597 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3EXV _symmetry.space_group_name_H-M 'I 2 3' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3EXV _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.79 _exptl_crystal.density_percent_sol 31.12 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293.15 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details '18% w/v PEG6000, 0.1M HEPES buffer, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293.15K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 93 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.pdbx_collection_date 2006-05-10 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator Undulator _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SLS BEAMLINE X06SA' _diffrn_source.pdbx_synchrotron_site SLS _diffrn_source.pdbx_synchrotron_beamline X06SA _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1 # _reflns.entry_id 3EXV _reflns.observed_criterion_sigma_I -3.0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 71 _reflns.d_resolution_high 1.45 _reflns.number_obs 28526 _reflns.number_all 30079 _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.045 _reflns.B_iso_Wilson_estimate 14.1 _reflns.pdbx_redundancy 6.0 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_netI_over_sigmaI ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.45 _reflns_shell.d_res_low 1.50 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.388 _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 5.4 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3EXV _refine.ls_number_reflns_obs 28526 _refine.ls_number_reflns_all 30079 _refine.pdbx_ls_sigma_I 0 _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 23.71 _refine.ls_d_res_high 1.45 _refine.ls_percent_reflns_obs 99.93 _refine.ls_R_factor_obs 0.19365 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.19204 _refine.ls_R_factor_R_free 0.22460 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 1525 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.957 _refine.correlation_coeff_Fo_to_Fc_free 0.939 _refine.B_iso_mean 9.959 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 'Human Adenovirus type 3 fiber knob' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.081 _refine.pdbx_overall_ESU_R_Free 0.082 _refine.overall_SU_ML 0.052 _refine.overall_SU_B 1.295 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1579 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 185 _refine_hist.number_atoms_total 1764 _refine_hist.d_res_high 1.45 _refine_hist.d_res_low 23.71 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.005 0.022 ? 1619 'X-RAY DIFFRACTION' ? r_bond_other_d 0.002 0.020 ? 1039 'X-RAY DIFFRACTION' ? r_angle_refined_deg 0.918 1.932 ? 2221 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.679 3.000 ? 2550 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 8.391 5.000 ? 208 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 37.106 24.737 ? 76 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 10.705 15.000 ? 261 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 12.861 15.000 ? 8 'X-RAY DIFFRACTION' ? r_chiral_restr 0.059 0.200 ? 260 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.004 0.020 ? 1832 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 333 'X-RAY DIFFRACTION' ? r_nbd_refined 0.184 0.200 ? 285 'X-RAY DIFFRACTION' ? r_nbd_other 0.192 0.200 ? 1157 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.174 0.200 ? 814 'X-RAY DIFFRACTION' ? r_nbtor_other 0.080 0.200 ? 847 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.088 0.200 ? 164 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.108 0.200 ? 22 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.210 0.200 ? 56 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.073 0.200 ? 29 'X-RAY DIFFRACTION' ? r_mcbond_it 0.550 1.500 ? 1299 'X-RAY DIFFRACTION' ? r_mcbond_other 0.054 1.500 ? 402 'X-RAY DIFFRACTION' ? r_mcangle_it 0.615 2.000 ? 1649 'X-RAY DIFFRACTION' ? r_scbond_it 0.765 3.000 ? 730 'X-RAY DIFFRACTION' ? r_scangle_it 1.096 4.500 ? 565 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.450 _refine_ls_shell.d_res_low 1.488 _refine_ls_shell.number_reflns_R_work 2072 _refine_ls_shell.R_factor_R_work 0.275 _refine_ls_shell.percent_reflns_obs 99.95 _refine_ls_shell.R_factor_R_free 0.311 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 112 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 3EXV _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3EXV _struct.title 'Crystal structure of the human Adenovirus type 11 fiber knob' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3EXV _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' _struct_keywords.text 'adenovirus, fiber knob, attachment protein, trimer, CD46, MCP, Ad11, Fiber protein, VIRAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code FIBP_ADE1P _struct_ref.pdbx_db_accession P35774 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;GLTFNSNNICIDDNINTLWTGVNPTEANCQIMNSSESNDCKLILTLVKTGALVTAFVYVIGVSNNFNMLTTHRNINFTAE LFFDSTGNLLTRLSSLKTPLNHKSGQNMATGAITNAKGFMPSTTAYPFNDNSREKENYIYGTCYYTASDRTAFPIDISVM LNRRAINDETSYCIRITWSWNTGDAPEVQTSATTLVTSPFTFYYIREDD ; _struct_ref.pdbx_align_begin 117 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3EXV _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 5 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 213 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P35774 _struct_ref_seq.db_align_beg 117 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 325 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 117 _struct_ref_seq.pdbx_auth_seq_align_end 325 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3EXV GLY A 1 ? UNP P35774 ? ? 'expression tag' 113 1 1 3EXV SER A 2 ? UNP P35774 ? ? 'expression tag' 114 2 1 3EXV HIS A 3 ? UNP P35774 ? ? 'expression tag' 115 3 1 3EXV MET A 4 ? UNP P35774 ? ? 'expression tag' 116 4 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 6570 ? 1 MORE -35 ? 1 'SSA (A^2)' 22360 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 8_555 -z,x,-y 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 3 'crystal symmetry operation' 11_555 y,-z,-x 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 17 ? ILE A 19 ? ASP A 129 ILE A 131 5 ? 3 HELX_P HELX_P2 2 SER A 67 ? MET A 72 ? SER A 179 MET A 184 1 ? 6 HELX_P HELX_P3 3 LEU A 73 ? HIS A 76 ? LEU A 185 HIS A 188 5 ? 4 HELX_P HELX_P4 4 ASN A 119 ? MET A 124 ? ASN A 231 MET A 236 5 ? 6 HELX_P HELX_P5 5 ASP A 134 ? GLU A 140 ? ASP A 246 GLU A 252 5 ? 7 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 4 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 21 ? TRP A 23 ? THR A 133 TRP A 135 A 2 CYS A 44 ? THR A 53 ? CYS A 156 THR A 165 A 3 LEU A 56 ? GLY A 65 ? LEU A 168 GLY A 177 A 4 PHE A 204 ? ILE A 209 ? PHE A 316 ILE A 321 B 1 ASN A 78 ? PHE A 87 ? ASN A 190 PHE A 199 B 2 TYR A 176 ? ASN A 185 ? TYR A 288 ASN A 297 B 3 ALA A 156 ? LEU A 165 ? ALA A 268 LEU A 277 B 4 TYR A 142 ? THR A 150 ? TYR A 254 THR A 262 C 1 LYS A 107 ? SER A 108 ? LYS A 219 SER A 220 C 2 ASN A 111 ? MET A 112 ? ASN A 223 MET A 224 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LEU A 22 ? N LEU A 134 O LEU A 50 ? O LEU A 162 A 2 3 N THR A 53 ? N THR A 165 O LEU A 56 ? O LEU A 168 A 3 4 N ALA A 59 ? N ALA A 171 O PHE A 206 ? O PHE A 318 B 1 2 N ALA A 83 ? N ALA A 195 O ILE A 180 ? O ILE A 292 B 2 3 O THR A 181 ? O THR A 293 N SER A 162 ? N SER A 274 B 3 4 O VAL A 163 ? O VAL A 275 N ILE A 143 ? N ILE A 255 C 1 2 N SER A 108 ? N SER A 220 O ASN A 111 ? O ASN A 223 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 OH _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 TYR _pdbx_validate_symm_contact.auth_seq_id_1 319 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 OH _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 TYR _pdbx_validate_symm_contact.auth_seq_id_2 319 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 8_555 _pdbx_validate_symm_contact.dist 1.54 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 139 ? ? 36.73 69.18 2 1 SER A 153 ? ? -162.78 -169.85 3 1 VAL A 178 ? ? -126.50 -54.80 4 1 ILE A 229 ? ? -83.65 -125.03 5 1 THR A 230 ? ? 76.45 30.60 6 1 ASN A 278 ? ? 51.90 -120.28 7 1 ARG A 279 ? ? 71.97 -58.66 8 1 THR A 309 ? ? -129.52 -83.82 # loop_ _pdbx_validate_peptide_omega.id _pdbx_validate_peptide_omega.PDB_model_num _pdbx_validate_peptide_omega.auth_comp_id_1 _pdbx_validate_peptide_omega.auth_asym_id_1 _pdbx_validate_peptide_omega.auth_seq_id_1 _pdbx_validate_peptide_omega.PDB_ins_code_1 _pdbx_validate_peptide_omega.label_alt_id_1 _pdbx_validate_peptide_omega.auth_comp_id_2 _pdbx_validate_peptide_omega.auth_asym_id_2 _pdbx_validate_peptide_omega.auth_seq_id_2 _pdbx_validate_peptide_omega.PDB_ins_code_2 _pdbx_validate_peptide_omega.label_alt_id_2 _pdbx_validate_peptide_omega.omega 1 1 GLY A 227 ? ? ALA A 228 ? ? -71.50 2 1 THR A 230 ? ? ASN A 231 ? ? 127.81 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 347 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id B _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 113 ? A GLY 1 2 1 Y 1 A SER 114 ? A SER 2 3 1 Y 1 A HIS 115 ? A HIS 3 4 1 Y 1 A MET 116 ? A MET 4 5 1 Y 1 A GLY 117 ? A GLY 5 6 1 Y 1 A LEU 118 ? A LEU 6 7 1 Y 1 A THR 119 ? A THR 7 8 1 Y 1 A PHE 120 ? A PHE 8 9 1 Y 1 A ASN 121 ? A ASN 9 10 1 Y 1 A SER 122 ? A SER 10 11 1 Y 1 A ASN 123 ? A ASN 11 12 1 Y 1 A ASN 124 ? A ASN 12 13 1 Y 1 A ILE 125 ? A ILE 13 14 1 Y 1 A CYS 126 ? A CYS 14 15 1 Y 1 A ILE 127 ? A ILE 15 16 1 Y 1 A ASP 128 ? A ASP 16 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 LEU N N N N 183 LEU CA C N S 184 LEU C C N N 185 LEU O O N N 186 LEU CB C N N 187 LEU CG C N N 188 LEU CD1 C N N 189 LEU CD2 C N N 190 LEU OXT O N N 191 LEU H H N N 192 LEU H2 H N N 193 LEU HA H N N 194 LEU HB2 H N N 195 LEU HB3 H N N 196 LEU HG H N N 197 LEU HD11 H N N 198 LEU HD12 H N N 199 LEU HD13 H N N 200 LEU HD21 H N N 201 LEU HD22 H N N 202 LEU HD23 H N N 203 LEU HXT H N N 204 LYS N N N N 205 LYS CA C N S 206 LYS C C N N 207 LYS O O N N 208 LYS CB C N N 209 LYS CG C N N 210 LYS CD C N N 211 LYS CE C N N 212 LYS NZ N N N 213 LYS OXT O N N 214 LYS H H N N 215 LYS H2 H N N 216 LYS HA H N N 217 LYS HB2 H N N 218 LYS HB3 H N N 219 LYS HG2 H N N 220 LYS HG3 H N N 221 LYS HD2 H N N 222 LYS HD3 H N N 223 LYS HE2 H N N 224 LYS HE3 H N N 225 LYS HZ1 H N N 226 LYS HZ2 H N N 227 LYS HZ3 H N N 228 LYS HXT H N N 229 MET N N N N 230 MET CA C N S 231 MET C C N N 232 MET O O N N 233 MET CB C N N 234 MET CG C N N 235 MET SD S N N 236 MET CE C N N 237 MET OXT O N N 238 MET H H N N 239 MET H2 H N N 240 MET HA H N N 241 MET HB2 H N N 242 MET HB3 H N N 243 MET HG2 H N N 244 MET HG3 H N N 245 MET HE1 H N N 246 MET HE2 H N N 247 MET HE3 H N N 248 MET HXT H N N 249 PHE N N N N 250 PHE CA C N S 251 PHE C C N N 252 PHE O O N N 253 PHE CB C N N 254 PHE CG C Y N 255 PHE CD1 C Y N 256 PHE CD2 C Y N 257 PHE CE1 C Y N 258 PHE CE2 C Y N 259 PHE CZ C Y N 260 PHE OXT O N N 261 PHE H H N N 262 PHE H2 H N N 263 PHE HA H N N 264 PHE HB2 H N N 265 PHE HB3 H N N 266 PHE HD1 H N N 267 PHE HD2 H N N 268 PHE HE1 H N N 269 PHE HE2 H N N 270 PHE HZ H N N 271 PHE HXT H N N 272 PRO N N N N 273 PRO CA C N S 274 PRO C C N N 275 PRO O O N N 276 PRO CB C N N 277 PRO CG C N N 278 PRO CD C N N 279 PRO OXT O N N 280 PRO H H N N 281 PRO HA H N N 282 PRO HB2 H N N 283 PRO HB3 H N N 284 PRO HG2 H N N 285 PRO HG3 H N N 286 PRO HD2 H N N 287 PRO HD3 H N N 288 PRO HXT H N N 289 SER N N N N 290 SER CA C N S 291 SER C C N N 292 SER O O N N 293 SER CB C N N 294 SER OG O N N 295 SER OXT O N N 296 SER H H N N 297 SER H2 H N N 298 SER HA H N N 299 SER HB2 H N N 300 SER HB3 H N N 301 SER HG H N N 302 SER HXT H N N 303 THR N N N N 304 THR CA C N S 305 THR C C N N 306 THR O O N N 307 THR CB C N R 308 THR OG1 O N N 309 THR CG2 C N N 310 THR OXT O N N 311 THR H H N N 312 THR H2 H N N 313 THR HA H N N 314 THR HB H N N 315 THR HG1 H N N 316 THR HG21 H N N 317 THR HG22 H N N 318 THR HG23 H N N 319 THR HXT H N N 320 TRP N N N N 321 TRP CA C N S 322 TRP C C N N 323 TRP O O N N 324 TRP CB C N N 325 TRP CG C Y N 326 TRP CD1 C Y N 327 TRP CD2 C Y N 328 TRP NE1 N Y N 329 TRP CE2 C Y N 330 TRP CE3 C Y N 331 TRP CZ2 C Y N 332 TRP CZ3 C Y N 333 TRP CH2 C Y N 334 TRP OXT O N N 335 TRP H H N N 336 TRP H2 H N N 337 TRP HA H N N 338 TRP HB2 H N N 339 TRP HB3 H N N 340 TRP HD1 H N N 341 TRP HE1 H N N 342 TRP HE3 H N N 343 TRP HZ2 H N N 344 TRP HZ3 H N N 345 TRP HH2 H N N 346 TRP HXT H N N 347 TYR N N N N 348 TYR CA C N S 349 TYR C C N N 350 TYR O O N N 351 TYR CB C N N 352 TYR CG C Y N 353 TYR CD1 C Y N 354 TYR CD2 C Y N 355 TYR CE1 C Y N 356 TYR CE2 C Y N 357 TYR CZ C Y N 358 TYR OH O N N 359 TYR OXT O N N 360 TYR H H N N 361 TYR H2 H N N 362 TYR HA H N N 363 TYR HB2 H N N 364 TYR HB3 H N N 365 TYR HD1 H N N 366 TYR HD2 H N N 367 TYR HE1 H N N 368 TYR HE2 H N N 369 TYR HH H N N 370 TYR HXT H N N 371 VAL N N N N 372 VAL CA C N S 373 VAL C C N N 374 VAL O O N N 375 VAL CB C N N 376 VAL CG1 C N N 377 VAL CG2 C N N 378 VAL OXT O N N 379 VAL H H N N 380 VAL H2 H N N 381 VAL HA H N N 382 VAL HB H N N 383 VAL HG11 H N N 384 VAL HG12 H N N 385 VAL HG13 H N N 386 VAL HG21 H N N 387 VAL HG22 H N N 388 VAL HG23 H N N 389 VAL HXT H N N 390 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 PHE N CA sing N N 237 PHE N H sing N N 238 PHE N H2 sing N N 239 PHE CA C sing N N 240 PHE CA CB sing N N 241 PHE CA HA sing N N 242 PHE C O doub N N 243 PHE C OXT sing N N 244 PHE CB CG sing N N 245 PHE CB HB2 sing N N 246 PHE CB HB3 sing N N 247 PHE CG CD1 doub Y N 248 PHE CG CD2 sing Y N 249 PHE CD1 CE1 sing Y N 250 PHE CD1 HD1 sing N N 251 PHE CD2 CE2 doub Y N 252 PHE CD2 HD2 sing N N 253 PHE CE1 CZ doub Y N 254 PHE CE1 HE1 sing N N 255 PHE CE2 CZ sing Y N 256 PHE CE2 HE2 sing N N 257 PHE CZ HZ sing N N 258 PHE OXT HXT sing N N 259 PRO N CA sing N N 260 PRO N CD sing N N 261 PRO N H sing N N 262 PRO CA C sing N N 263 PRO CA CB sing N N 264 PRO CA HA sing N N 265 PRO C O doub N N 266 PRO C OXT sing N N 267 PRO CB CG sing N N 268 PRO CB HB2 sing N N 269 PRO CB HB3 sing N N 270 PRO CG CD sing N N 271 PRO CG HG2 sing N N 272 PRO CG HG3 sing N N 273 PRO CD HD2 sing N N 274 PRO CD HD3 sing N N 275 PRO OXT HXT sing N N 276 SER N CA sing N N 277 SER N H sing N N 278 SER N H2 sing N N 279 SER CA C sing N N 280 SER CA CB sing N N 281 SER CA HA sing N N 282 SER C O doub N N 283 SER C OXT sing N N 284 SER CB OG sing N N 285 SER CB HB2 sing N N 286 SER CB HB3 sing N N 287 SER OG HG sing N N 288 SER OXT HXT sing N N 289 THR N CA sing N N 290 THR N H sing N N 291 THR N H2 sing N N 292 THR CA C sing N N 293 THR CA CB sing N N 294 THR CA HA sing N N 295 THR C O doub N N 296 THR C OXT sing N N 297 THR CB OG1 sing N N 298 THR CB CG2 sing N N 299 THR CB HB sing N N 300 THR OG1 HG1 sing N N 301 THR CG2 HG21 sing N N 302 THR CG2 HG22 sing N N 303 THR CG2 HG23 sing N N 304 THR OXT HXT sing N N 305 TRP N CA sing N N 306 TRP N H sing N N 307 TRP N H2 sing N N 308 TRP CA C sing N N 309 TRP CA CB sing N N 310 TRP CA HA sing N N 311 TRP C O doub N N 312 TRP C OXT sing N N 313 TRP CB CG sing N N 314 TRP CB HB2 sing N N 315 TRP CB HB3 sing N N 316 TRP CG CD1 doub Y N 317 TRP CG CD2 sing Y N 318 TRP CD1 NE1 sing Y N 319 TRP CD1 HD1 sing N N 320 TRP CD2 CE2 doub Y N 321 TRP CD2 CE3 sing Y N 322 TRP NE1 CE2 sing Y N 323 TRP NE1 HE1 sing N N 324 TRP CE2 CZ2 sing Y N 325 TRP CE3 CZ3 doub Y N 326 TRP CE3 HE3 sing N N 327 TRP CZ2 CH2 doub Y N 328 TRP CZ2 HZ2 sing N N 329 TRP CZ3 CH2 sing Y N 330 TRP CZ3 HZ3 sing N N 331 TRP CH2 HH2 sing N N 332 TRP OXT HXT sing N N 333 TYR N CA sing N N 334 TYR N H sing N N 335 TYR N H2 sing N N 336 TYR CA C sing N N 337 TYR CA CB sing N N 338 TYR CA HA sing N N 339 TYR C O doub N N 340 TYR C OXT sing N N 341 TYR CB CG sing N N 342 TYR CB HB2 sing N N 343 TYR CB HB3 sing N N 344 TYR CG CD1 doub Y N 345 TYR CG CD2 sing Y N 346 TYR CD1 CE1 sing Y N 347 TYR CD1 HD1 sing N N 348 TYR CD2 CE2 doub Y N 349 TYR CD2 HD2 sing N N 350 TYR CE1 CZ doub Y N 351 TYR CE1 HE1 sing N N 352 TYR CE2 CZ sing Y N 353 TYR CE2 HE2 sing N N 354 TYR CZ OH sing N N 355 TYR OH HH sing N N 356 TYR OXT HXT sing N N 357 VAL N CA sing N N 358 VAL N H sing N N 359 VAL N H2 sing N N 360 VAL CA C sing N N 361 VAL CA CB sing N N 362 VAL CA HA sing N N 363 VAL C O doub N N 364 VAL C OXT sing N N 365 VAL CB CG1 sing N N 366 VAL CB CG2 sing N N 367 VAL CB HB sing N N 368 VAL CG1 HG11 sing N N 369 VAL CG1 HG12 sing N N 370 VAL CG1 HG13 sing N N 371 VAL CG2 HG21 sing N N 372 VAL CG2 HG22 sing N N 373 VAL CG2 HG23 sing N N 374 VAL OXT HXT sing N N 375 # _pdbx_initial_refinement_model.accession_code 1H7Z _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.details 'Human Adenovirus type 3 fiber knob' # _atom_sites.entry_id 3EXV _atom_sites.fract_transf_matrix[1][1] 0.009941 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009941 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009941 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_