HEADER VIRAL PROTEIN 17-OCT-08 3EXV TITLE CRYSTAL STRUCTURE OF THE HUMAN ADENOVIRUS TYPE 11 FIBER KNOB COMPND MOL_ID: 1; COMPND 2 MOLECULE: FIBER PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 117-325; COMPND 5 SYNONYM: PIV; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN ADENOVIRUS B; SOURCE 3 ORGANISM_TAXID: 108098; SOURCE 4 STRAIN: SLOBISKI; SOURCE 5 GENE: PIV; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS ADENOVIRUS, FIBER KNOB, ATTACHMENT PROTEIN, TRIMER, CD46, MCP, AD11, KEYWDS 2 FIBER PROTEIN, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR B.D.PERSSON,D.M.REITER,N.ARNBERG,T.STEHLE REVDAT 5 03-APR-24 3EXV 1 REMARK REVDAT 4 27-DEC-23 3EXV 1 SEQADV REVDAT 3 24-JAN-18 3EXV 1 AUTHOR REVDAT 2 13-JAN-09 3EXV 1 JRNL VERSN REVDAT 1 25-NOV-08 3EXV 0 JRNL AUTH B.D.PERSSON,S.MULLER,D.M.REITER,B.B.SCHMITT,M.MARTTILA, JRNL AUTH 2 C.V.SUMOWSKI,S.SCHWEIZER,U.SCHEU,C.OCHSENFELD,N.ARNBERG, JRNL AUTH 3 T.STEHLE JRNL TITL AN ARGININE SWITCH IN THE SPECIES B ADENOVIRUS KNOB JRNL TITL 2 DETERMINES HIGH-AFFINITY ENGAGEMENT OF CELLULAR RECEPTOR JRNL TITL 3 CD46 JRNL REF J.VIROL. V. 83 673 2009 JRNL REFN ISSN 0022-538X JRNL PMID 18987134 JRNL DOI 10.1128/JVI.01967-08 REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.0 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.71 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 28526 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1525 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.49 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2072 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.2750 REMARK 3 BIN FREE R VALUE SET COUNT : 112 REMARK 3 BIN FREE R VALUE : 0.3110 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1548 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 185 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 9.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.081 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.082 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.052 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.295 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1619 ; 0.005 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1039 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2221 ; 0.918 ; 1.932 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2550 ; 0.679 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 208 ; 8.391 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 76 ;37.106 ;24.737 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 261 ;10.705 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;12.861 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 260 ; 0.059 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1832 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 333 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 285 ; 0.184 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1157 ; 0.192 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 814 ; 0.174 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 847 ; 0.080 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 164 ; 0.088 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 22 ; 0.108 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 56 ; 0.210 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 29 ; 0.073 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1299 ; 0.550 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 402 ; 0.054 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1649 ; 0.615 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 730 ; 0.765 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 565 ; 1.096 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3EXV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-NOV-08. REMARK 100 THE DEPOSITION ID IS D_1000049903. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAY-06 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : UNDULATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28526 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 71.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04500 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.38800 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: HUMAN ADENOVIRUS TYPE 3 FIBER KNOB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 31.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18% W/V PEG6000, 0.1M HEPES BUFFER, PH REMARK 280 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 50.29850 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 50.29850 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 50.29850 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 50.29850 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 50.29850 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 50.29850 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 50.29850 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 50.29850 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 50.29850 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 50.29850 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 50.29850 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 50.29850 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 50.29850 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 50.29850 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 50.29850 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 50.29850 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 50.29850 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 50.29850 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 50.29850 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 50.29850 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 50.29850 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 50.29850 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 50.29850 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 50.29850 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 50.29850 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 50.29850 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 50.29850 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 50.29850 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 50.29850 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 50.29850 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 50.29850 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 50.29850 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 50.29850 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 50.29850 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 50.29850 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 50.29850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 3 -1.000000 0.000000 0.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 347 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 113 REMARK 465 SER A 114 REMARK 465 HIS A 115 REMARK 465 MET A 116 REMARK 465 GLY A 117 REMARK 465 LEU A 118 REMARK 465 THR A 119 REMARK 465 PHE A 120 REMARK 465 ASN A 121 REMARK 465 SER A 122 REMARK 465 ASN A 123 REMARK 465 ASN A 124 REMARK 465 ILE A 125 REMARK 465 CYS A 126 REMARK 465 ILE A 127 REMARK 465 ASP A 128 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OH TYR A 319 OH TYR A 319 8555 1.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 139 69.18 36.73 REMARK 500 SER A 153 -169.85 -162.78 REMARK 500 VAL A 178 -54.80 -126.50 REMARK 500 ILE A 229 -125.03 -83.65 REMARK 500 THR A 230 30.60 76.45 REMARK 500 ASN A 278 -120.28 51.90 REMARK 500 ARG A 279 -58.66 71.97 REMARK 500 THR A 309 -83.82 -129.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 227 ALA A 228 -71.50 REMARK 500 THR A 230 ASN A 231 127.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2O39 RELATED DB: PDB REMARK 900 HUMAN ADENOVIRUS TYPE 11 KNOB IN COMPLEX WITH DOMAINS SCR1 AND SCR2 REMARK 900 OF CD46 (MEMBRANE COFACTOR PROTEIN, MCP) REMARK 900 RELATED ID: 2QLK RELATED DB: PDB REMARK 900 ADENOVIRUS AD35 FIBRE HEAD REMARK 900 RELATED ID: 3BQ4 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF AD35 FIBER KNOB REMARK 900 RELATED ID: 1KNB RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE RECEPTOR-BINDING DOMAIN OF ADENOVIRUS TYPE REMARK 900 5 FIBER PROTEIN AT 1.7 ANGSTROMS RESOLUTION REMARK 900 RELATED ID: 3EXW RELATED DB: PDB REMARK 900 RELATED ID: 3FOY RELATED DB: PDB DBREF 3EXV A 117 325 UNP P35774 FIBP_ADE1P 117 325 SEQADV 3EXV GLY A 113 UNP P35774 EXPRESSION TAG SEQADV 3EXV SER A 114 UNP P35774 EXPRESSION TAG SEQADV 3EXV HIS A 115 UNP P35774 EXPRESSION TAG SEQADV 3EXV MET A 116 UNP P35774 EXPRESSION TAG SEQRES 1 A 213 GLY SER HIS MET GLY LEU THR PHE ASN SER ASN ASN ILE SEQRES 2 A 213 CYS ILE ASP ASP ASN ILE ASN THR LEU TRP THR GLY VAL SEQRES 3 A 213 ASN PRO THR GLU ALA ASN CYS GLN ILE MET ASN SER SER SEQRES 4 A 213 GLU SER ASN ASP CYS LYS LEU ILE LEU THR LEU VAL LYS SEQRES 5 A 213 THR GLY ALA LEU VAL THR ALA PHE VAL TYR VAL ILE GLY SEQRES 6 A 213 VAL SER ASN ASN PHE ASN MET LEU THR THR HIS ARG ASN SEQRES 7 A 213 ILE ASN PHE THR ALA GLU LEU PHE PHE ASP SER THR GLY SEQRES 8 A 213 ASN LEU LEU THR ARG LEU SER SER LEU LYS THR PRO LEU SEQRES 9 A 213 ASN HIS LYS SER GLY GLN ASN MET ALA THR GLY ALA ILE SEQRES 10 A 213 THR ASN ALA LYS GLY PHE MET PRO SER THR THR ALA TYR SEQRES 11 A 213 PRO PHE ASN ASP ASN SER ARG GLU LYS GLU ASN TYR ILE SEQRES 12 A 213 TYR GLY THR CYS TYR TYR THR ALA SER ASP ARG THR ALA SEQRES 13 A 213 PHE PRO ILE ASP ILE SER VAL MET LEU ASN ARG ARG ALA SEQRES 14 A 213 ILE ASN ASP GLU THR SER TYR CYS ILE ARG ILE THR TRP SEQRES 15 A 213 SER TRP ASN THR GLY ASP ALA PRO GLU VAL GLN THR SER SEQRES 16 A 213 ALA THR THR LEU VAL THR SER PRO PHE THR PHE TYR TYR SEQRES 17 A 213 ILE ARG GLU ASP ASP FORMUL 2 HOH *185(H2 O) HELIX 1 1 ASP A 129 ILE A 131 5 3 HELIX 2 2 SER A 179 MET A 184 1 6 HELIX 3 3 LEU A 185 HIS A 188 5 4 HELIX 4 4 ASN A 231 MET A 236 5 6 HELIX 5 5 ASP A 246 GLU A 252 5 7 SHEET 1 A 4 THR A 133 TRP A 135 0 SHEET 2 A 4 CYS A 156 THR A 165 -1 O LEU A 162 N LEU A 134 SHEET 3 A 4 LEU A 168 GLY A 177 -1 O LEU A 168 N THR A 165 SHEET 4 A 4 PHE A 316 ILE A 321 -1 O PHE A 318 N ALA A 171 SHEET 1 B 4 ASN A 190 PHE A 199 0 SHEET 2 B 4 TYR A 288 ASN A 297 -1 O ILE A 292 N ALA A 195 SHEET 3 B 4 ALA A 268 LEU A 277 -1 N SER A 274 O THR A 293 SHEET 4 B 4 TYR A 254 THR A 262 -1 N ILE A 255 O VAL A 275 SHEET 1 C 2 LYS A 219 SER A 220 0 SHEET 2 C 2 ASN A 223 MET A 224 -1 O ASN A 223 N SER A 220 CRYST1 100.597 100.597 100.597 90.00 90.00 90.00 I 2 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009941 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009941 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009941 0.00000