HEADER VIRAL PROTEIN 17-OCT-08 3EXW TITLE CRYSTAL STRUCTURE OF THE HUMAN ADENOVIRUS TYPE 7 FIBER KNOB COMPND MOL_ID: 1; COMPND 2 MOLECULE: L5 FIBER PROTEIN; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: RESIDUES 117-325; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN ADENOVIRUS 7; SOURCE 3 ORGANISM_TAXID: 10519; SOURCE 4 STRAIN: GOMEN; SOURCE 5 GENE: L5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS ADENOVIRUS, TRIMER, FIBER KNOB, AD7, ADS, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR B.D.PERSSON,D.M.REITER,N.ARNBERG,T.STEHLE REVDAT 4 03-APR-24 3EXW 1 REMARK REVDAT 3 27-DEC-23 3EXW 1 SEQADV REVDAT 2 13-JAN-09 3EXW 1 JRNL VERSN REVDAT 1 25-NOV-08 3EXW 0 JRNL AUTH B.D.PERSSON,S.MULLER,D.M.REITER,B.B.SCHMITT,M.MARTTILA, JRNL AUTH 2 C.V.SUMOWSKI,S.SCHWEIZER,U.SCHEU,C.OCHSENFELD,N.ARNBERG, JRNL AUTH 3 T.STEHLE JRNL TITL AN ARGININE SWITCH IN THE SPECIES B ADENOVIRUS KNOB JRNL TITL 2 DETERMINES HIGH-AFFINITY ENGAGEMENT OF CELLULAR RECEPTOR JRNL TITL 3 CD46 JRNL REF J.VIROL. V. 83 673 2009 JRNL REFN ISSN 0022-538X JRNL PMID 18987134 JRNL DOI 10.1128/JVI.01967-08 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.3.0037 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.11 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 52966 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5916 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3701 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.50 REMARK 3 BIN R VALUE (WORKING SET) : 0.2780 REMARK 3 BIN FREE R VALUE SET COUNT : 441 REMARK 3 BIN FREE R VALUE : 0.3190 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4614 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 492 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.20000 REMARK 3 B22 (A**2) : -1.03000 REMARK 3 B33 (A**2) : 2.23000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.139 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.130 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.092 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.906 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4743 ; 0.006 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2957 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6497 ; 0.732 ; 1.932 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7281 ; 0.651 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 601 ;18.090 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 207 ;36.472 ;25.217 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 739 ;12.441 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;19.272 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 775 ; 0.054 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5315 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 944 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 871 ; 0.212 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3280 ; 0.218 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2382 ; 0.181 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2463 ; 0.084 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 420 ; 0.178 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 14 ; 0.271 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 22 ; 0.285 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 11 ; 0.170 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3826 ; 0.983 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1196 ; 0.173 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4874 ; 1.144 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2096 ; 1.695 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1618 ; 2.365 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 0 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 2505 ; 0.05 ; 0.05 REMARK 3 TIGHT THERMAL 1 A (A**2): 2505 ; 0.17 ; 0.50 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3EXW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-NOV-08. REMARK 100 THE DEPOSITION ID IS D_1000049904. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-OCT-06 REMARK 200 TEMPERATURE (KELVIN) : 93.15 REMARK 200 PH : 7.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : UNDULATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52966 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 79.060 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05000 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.36400 REMARK 200 FOR SHELL : 1.340 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: HUMAN ADENOVIRUS TYPE 11 FIBER KNOB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 23% W/V PEG 3350, 0.1M HEPES BUFFER, REMARK 280 PH 7.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 41.65500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.02500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 41.65500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.02500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 113 REMARK 465 SER A 114 REMARK 465 HIS A 115 REMARK 465 MET A 116 REMARK 465 GLY A 117 REMARK 465 LEU A 118 REMARK 465 THR A 119 REMARK 465 PHE A 120 REMARK 465 ASN A 121 REMARK 465 SER A 122 REMARK 465 ASN A 123 REMARK 465 ASN A 124 REMARK 465 ILE A 125 REMARK 465 CYS A 126 REMARK 465 ILE A 127 REMARK 465 GLY B 113 REMARK 465 SER B 114 REMARK 465 HIS B 115 REMARK 465 MET B 116 REMARK 465 GLY B 117 REMARK 465 LEU B 118 REMARK 465 THR B 119 REMARK 465 PHE B 120 REMARK 465 ASN B 121 REMARK 465 SER B 122 REMARK 465 ASN B 123 REMARK 465 ASN B 124 REMARK 465 ILE B 125 REMARK 465 CYS B 126 REMARK 465 ILE B 127 REMARK 465 GLY C 113 REMARK 465 SER C 114 REMARK 465 HIS C 115 REMARK 465 MET C 116 REMARK 465 GLY C 117 REMARK 465 LEU C 118 REMARK 465 THR C 119 REMARK 465 PHE C 120 REMARK 465 ASN C 121 REMARK 465 SER C 122 REMARK 465 ASN C 123 REMARK 465 ASN C 124 REMARK 465 ILE C 125 REMARK 465 CYS C 126 REMARK 465 ILE C 127 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 319 OH TYR B 319 1.73 REMARK 500 OG SER C 150 O HOH C 333 1.82 REMARK 500 OG1 THR C 298 O HOH C 485 1.99 REMARK 500 OH TYR A 319 OH TYR C 319 2.10 REMARK 500 O THR A 298 O HOH A 493 2.13 REMARK 500 O HOH B 499 O HOH C 416 2.13 REMARK 500 OH TYR B 319 OH TYR C 319 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 139 72.10 34.97 REMARK 500 GLU A 152 -111.82 50.12 REMARK 500 ASN A 231 42.14 82.63 REMARK 500 ASN A 278 -124.21 47.78 REMARK 500 GLN A 279 -57.71 75.46 REMARK 500 PRO A 302 -37.40 -36.14 REMARK 500 GLU A 303 145.57 -171.69 REMARK 500 THR A 309 -91.57 -128.64 REMARK 500 THR A 309 -90.92 -129.12 REMARK 500 ASN B 139 73.18 34.13 REMARK 500 GLU B 152 -109.23 46.25 REMARK 500 ASN B 278 -124.10 50.06 REMARK 500 GLN B 279 -56.90 76.24 REMARK 500 THR B 309 -88.89 -129.63 REMARK 500 ASN C 139 66.84 39.19 REMARK 500 ALA C 149 36.58 -39.68 REMARK 500 ASN C 278 -125.37 47.76 REMARK 500 GLN C 279 -62.14 79.02 REMARK 500 THR C 309 -85.48 -135.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 151 GLU A 152 84.03 REMARK 500 THR A 230 ASN A 231 147.18 REMARK 500 ASN A 231 ALA A 232 -148.44 REMARK 500 VAL A 300 ALA A 301 -122.13 REMARK 500 PRO A 302 GLU A 303 -133.88 REMARK 500 ASP B 128 ASP B 129 -38.98 REMARK 500 SER B 151 GLU B 152 88.55 REMARK 500 VAL B 300 ALA B 301 -145.05 REMARK 500 MET C 148 ALA C 149 127.54 REMARK 500 ALA C 149 SER C 150 146.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2O39 RELATED DB: PDB REMARK 900 HUMAN ADENOVIRUS TYPE 11 KNOB IN COMPLEX WITH DOMAINS SCR1 AND SCR2 REMARK 900 OF CD46 (MEMBRANE COFACTOR PROTEIN, MCP) REMARK 900 RELATED ID: 2QLK RELATED DB: PDB REMARK 900 ADENOVIRUS AD35 FIBRE HEAD REMARK 900 RELATED ID: 3BQ4 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF AD35 FIBER KNOB REMARK 900 RELATED ID: 1KNB RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE RECEPTOR-BINDING DOMAIN OF ADENOVIRUS TYPE REMARK 900 5 FIBER PROTEIN AT 1.7 ANGSTROMS RESOLUTION REMARK 900 RELATED ID: 3EXV RELATED DB: PDB REMARK 900 RELATED ID: 3FOY RELATED DB: PDB DBREF 3EXW A 117 325 UNP Q5EY45 Q5EY45_ADE07 117 325 DBREF 3EXW B 117 325 UNP Q5EY45 Q5EY45_ADE07 117 325 DBREF 3EXW C 117 325 UNP Q5EY45 Q5EY45_ADE07 117 325 SEQADV 3EXW GLY A 113 UNP Q5EY45 EXPRESSION TAG SEQADV 3EXW SER A 114 UNP Q5EY45 EXPRESSION TAG SEQADV 3EXW HIS A 115 UNP Q5EY45 EXPRESSION TAG SEQADV 3EXW MET A 116 UNP Q5EY45 EXPRESSION TAG SEQADV 3EXW GLY B 113 UNP Q5EY45 EXPRESSION TAG SEQADV 3EXW SER B 114 UNP Q5EY45 EXPRESSION TAG SEQADV 3EXW HIS B 115 UNP Q5EY45 EXPRESSION TAG SEQADV 3EXW MET B 116 UNP Q5EY45 EXPRESSION TAG SEQADV 3EXW GLY C 113 UNP Q5EY45 EXPRESSION TAG SEQADV 3EXW SER C 114 UNP Q5EY45 EXPRESSION TAG SEQADV 3EXW HIS C 115 UNP Q5EY45 EXPRESSION TAG SEQADV 3EXW MET C 116 UNP Q5EY45 EXPRESSION TAG SEQRES 1 A 213 GLY SER HIS MET GLY LEU THR PHE ASN SER ASN ASN ILE SEQRES 2 A 213 CYS ILE ASP ASP ASN ILE ASN THR LEU TRP THR GLY VAL SEQRES 3 A 213 ASN PRO THR THR ALA ASN CYS GLN ILE MET ALA SER SER SEQRES 4 A 213 GLU SER ASN ASP CYS LYS LEU ILE LEU THR LEU VAL LYS SEQRES 5 A 213 THR GLY ALA LEU VAL THR ALA PHE VAL TYR VAL ILE GLY SEQRES 6 A 213 VAL SER ASN ASP PHE ASN MET LEU THR THR HIS LYS ASN SEQRES 7 A 213 ILE ASN PHE THR ALA GLU LEU PHE PHE ASP SER THR GLY SEQRES 8 A 213 ASN LEU LEU THR SER LEU SER SER LEU LYS THR PRO LEU SEQRES 9 A 213 ASN HIS LYS SER GLY GLN ASN MET ALA THR GLY ALA LEU SEQRES 10 A 213 THR ASN ALA LYS GLY PHE MET PRO SER THR THR ALA TYR SEQRES 11 A 213 PRO PHE ASN VAL ASN SER ARG GLU LYS GLU ASN TYR ILE SEQRES 12 A 213 TYR GLY THR CYS TYR TYR THR ALA SER ASP HIS THR ALA SEQRES 13 A 213 PHE PRO ILE ASP ILE SER VAL MET LEU ASN GLN ARG ALA SEQRES 14 A 213 LEU ASN ASN GLU THR SER TYR CYS ILE ARG VAL THR TRP SEQRES 15 A 213 SER TRP ASN THR GLY VAL ALA PRO GLU VAL GLN THR SER SEQRES 16 A 213 ALA THR THR LEU VAL THR SER PRO PHE THR PHE TYR TYR SEQRES 17 A 213 ILE ARG GLU ASP ASP SEQRES 1 B 213 GLY SER HIS MET GLY LEU THR PHE ASN SER ASN ASN ILE SEQRES 2 B 213 CYS ILE ASP ASP ASN ILE ASN THR LEU TRP THR GLY VAL SEQRES 3 B 213 ASN PRO THR THR ALA ASN CYS GLN ILE MET ALA SER SER SEQRES 4 B 213 GLU SER ASN ASP CYS LYS LEU ILE LEU THR LEU VAL LYS SEQRES 5 B 213 THR GLY ALA LEU VAL THR ALA PHE VAL TYR VAL ILE GLY SEQRES 6 B 213 VAL SER ASN ASP PHE ASN MET LEU THR THR HIS LYS ASN SEQRES 7 B 213 ILE ASN PHE THR ALA GLU LEU PHE PHE ASP SER THR GLY SEQRES 8 B 213 ASN LEU LEU THR SER LEU SER SER LEU LYS THR PRO LEU SEQRES 9 B 213 ASN HIS LYS SER GLY GLN ASN MET ALA THR GLY ALA LEU SEQRES 10 B 213 THR ASN ALA LYS GLY PHE MET PRO SER THR THR ALA TYR SEQRES 11 B 213 PRO PHE ASN VAL ASN SER ARG GLU LYS GLU ASN TYR ILE SEQRES 12 B 213 TYR GLY THR CYS TYR TYR THR ALA SER ASP HIS THR ALA SEQRES 13 B 213 PHE PRO ILE ASP ILE SER VAL MET LEU ASN GLN ARG ALA SEQRES 14 B 213 LEU ASN ASN GLU THR SER TYR CYS ILE ARG VAL THR TRP SEQRES 15 B 213 SER TRP ASN THR GLY VAL ALA PRO GLU VAL GLN THR SER SEQRES 16 B 213 ALA THR THR LEU VAL THR SER PRO PHE THR PHE TYR TYR SEQRES 17 B 213 ILE ARG GLU ASP ASP SEQRES 1 C 213 GLY SER HIS MET GLY LEU THR PHE ASN SER ASN ASN ILE SEQRES 2 C 213 CYS ILE ASP ASP ASN ILE ASN THR LEU TRP THR GLY VAL SEQRES 3 C 213 ASN PRO THR THR ALA ASN CYS GLN ILE MET ALA SER SER SEQRES 4 C 213 GLU SER ASN ASP CYS LYS LEU ILE LEU THR LEU VAL LYS SEQRES 5 C 213 THR GLY ALA LEU VAL THR ALA PHE VAL TYR VAL ILE GLY SEQRES 6 C 213 VAL SER ASN ASP PHE ASN MET LEU THR THR HIS LYS ASN SEQRES 7 C 213 ILE ASN PHE THR ALA GLU LEU PHE PHE ASP SER THR GLY SEQRES 8 C 213 ASN LEU LEU THR SER LEU SER SER LEU LYS THR PRO LEU SEQRES 9 C 213 ASN HIS LYS SER GLY GLN ASN MET ALA THR GLY ALA LEU SEQRES 10 C 213 THR ASN ALA LYS GLY PHE MET PRO SER THR THR ALA TYR SEQRES 11 C 213 PRO PHE ASN VAL ASN SER ARG GLU LYS GLU ASN TYR ILE SEQRES 12 C 213 TYR GLY THR CYS TYR TYR THR ALA SER ASP HIS THR ALA SEQRES 13 C 213 PHE PRO ILE ASP ILE SER VAL MET LEU ASN GLN ARG ALA SEQRES 14 C 213 LEU ASN ASN GLU THR SER TYR CYS ILE ARG VAL THR TRP SEQRES 15 C 213 SER TRP ASN THR GLY VAL ALA PRO GLU VAL GLN THR SER SEQRES 16 C 213 ALA THR THR LEU VAL THR SER PRO PHE THR PHE TYR TYR SEQRES 17 C 213 ILE ARG GLU ASP ASP FORMUL 4 HOH *492(H2 O) HELIX 1 1 ASP A 128 ILE A 131 5 4 HELIX 2 2 SER A 179 MET A 184 1 6 HELIX 3 3 LEU A 185 HIS A 188 5 4 HELIX 4 4 ASN A 231 MET A 236 5 6 HELIX 5 5 VAL A 246 GLU A 252 5 7 HELIX 6 6 ASP B 129 ILE B 131 5 3 HELIX 7 7 SER B 179 MET B 184 1 6 HELIX 8 8 LEU B 185 HIS B 188 5 4 HELIX 9 9 ASN B 231 MET B 236 5 6 HELIX 10 10 VAL B 246 GLU B 252 5 7 HELIX 11 11 ASP C 128 ILE C 131 5 4 HELIX 12 12 SER C 179 MET C 184 1 6 HELIX 13 13 LEU C 185 HIS C 188 5 4 HELIX 14 14 ASN C 231 MET C 236 5 6 HELIX 15 15 VAL C 246 GLU C 252 5 7 HELIX 16 16 VAL C 304 ALA C 308 5 5 SHEET 1 A 4 THR A 133 TRP A 135 0 SHEET 2 A 4 CYS A 156 THR A 165 -1 O LEU A 162 N LEU A 134 SHEET 3 A 4 LEU A 168 GLY A 177 -1 O LEU A 168 N THR A 165 SHEET 4 A 4 PHE A 316 ILE A 321 -1 O PHE A 318 N ALA A 171 SHEET 1 B 4 ASN A 190 PHE A 199 0 SHEET 2 B 4 TYR A 288 ASN A 297 -1 O ILE A 290 N LEU A 197 SHEET 3 B 4 ALA A 268 LEU A 277 -1 N SER A 274 O THR A 293 SHEET 4 B 4 TYR A 254 THR A 262 -1 N TYR A 261 O PHE A 269 SHEET 1 C 2 LYS A 219 SER A 220 0 SHEET 2 C 2 ASN A 223 MET A 224 -1 O ASN A 223 N SER A 220 SHEET 1 D 4 THR B 133 TRP B 135 0 SHEET 2 D 4 CYS B 156 THR B 165 -1 O LEU B 162 N LEU B 134 SHEET 3 D 4 LEU B 168 GLY B 177 -1 O LEU B 168 N THR B 165 SHEET 4 D 4 PHE B 316 ILE B 321 -1 O PHE B 318 N ALA B 171 SHEET 1 E 4 ASN B 190 PHE B 199 0 SHEET 2 E 4 TYR B 288 ASN B 297 -1 O TYR B 288 N PHE B 199 SHEET 3 E 4 ALA B 268 LEU B 277 -1 N SER B 274 O THR B 293 SHEET 4 E 4 TYR B 254 THR B 262 -1 N TYR B 261 O PHE B 269 SHEET 1 F 2 LYS B 219 SER B 220 0 SHEET 2 F 2 ASN B 223 MET B 224 -1 O ASN B 223 N SER B 220 SHEET 1 G 4 THR C 133 TRP C 135 0 SHEET 2 G 4 CYS C 156 THR C 165 -1 O LEU C 162 N LEU C 134 SHEET 3 G 4 LEU C 168 GLY C 177 -1 O ILE C 176 N LYS C 157 SHEET 4 G 4 PHE C 316 ILE C 321 -1 O PHE C 318 N ALA C 171 SHEET 1 H 4 ASN C 190 PHE C 199 0 SHEET 2 H 4 TYR C 288 ASN C 297 -1 O ILE C 290 N LEU C 197 SHEET 3 H 4 ALA C 268 LEU C 277 -1 N SER C 274 O THR C 293 SHEET 4 H 4 TYR C 254 THR C 262 -1 N CYS C 259 O ILE C 271 SHEET 1 I 2 LYS C 219 SER C 220 0 SHEET 2 I 2 ASN C 223 MET C 224 -1 O ASN C 223 N SER C 220 CRYST1 83.310 88.050 79.170 90.00 90.00 90.00 P 21 21 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012003 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011357 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012631 0.00000