data_3EYI # _entry.id 3EYI # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3EYI pdb_00003eyi 10.2210/pdb3eyi/pdb NDB PD1193 ? ? RCSB RCSB049926 ? ? WWPDB D_1000049926 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-01-13 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2023-12-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3EYI _pdbx_database_status.recvd_initial_deposition_date 2008-10-21 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ha, S.C.' 1 'Kim, K.K.' 2 # _citation.id primary _citation.title ;The crystal structure of the second Z-DNA binding domain of human DAI (ZBP1) in complex with Z-DNA reveals an unusual binding mode to Z-DNA. ; _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 105 _citation.page_first 20671 _citation.page_last 20676 _citation.year 2008 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19095800 _citation.pdbx_database_id_DOI 10.1073/pnas.0810463106 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ha, S.C.' 1 ? primary 'Kim, D.' 2 ? primary 'Hwang, H.Y.' 3 ? primary 'Rich, A.' 4 ? primary 'Kim, Y.G.' 5 ? primary 'Kim, K.K.' 6 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Z-DNA-binding protein 1' 8703.931 2 ? ? 'The second Z-DNA binding domain (Zbeta)' ? 2 polymer syn "5'-TCGCGCG-3'" 2114.398 2 ? ? ? ? 3 water nat water 18.015 351 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Tumor stroma and activated macrophage protein DLM-1' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no HMASPQFSQQREEDIYRFLKDNGPQRALVIAQALGMRTAKDVNRDLYRMKSRHLLDMDEQSKAWTIYRWTIY HMASPQFSQQREEDIYRFLKDNGPQRALVIAQALGMRTAKDVNRDLYRMKSRHLLDMDEQSKAWTIYRWTIY A,B ? 2 polydeoxyribonucleotide no no '(DT)(DC)(DG)(DC)(DG)(DC)(DG)' TCGCGCG C,D ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 HIS n 1 2 MET n 1 3 ALA n 1 4 SER n 1 5 PRO n 1 6 GLN n 1 7 PHE n 1 8 SER n 1 9 GLN n 1 10 GLN n 1 11 ARG n 1 12 GLU n 1 13 GLU n 1 14 ASP n 1 15 ILE n 1 16 TYR n 1 17 ARG n 1 18 PHE n 1 19 LEU n 1 20 LYS n 1 21 ASP n 1 22 ASN n 1 23 GLY n 1 24 PRO n 1 25 GLN n 1 26 ARG n 1 27 ALA n 1 28 LEU n 1 29 VAL n 1 30 ILE n 1 31 ALA n 1 32 GLN n 1 33 ALA n 1 34 LEU n 1 35 GLY n 1 36 MET n 1 37 ARG n 1 38 THR n 1 39 ALA n 1 40 LYS n 1 41 ASP n 1 42 VAL n 1 43 ASN n 1 44 ARG n 1 45 ASP n 1 46 LEU n 1 47 TYR n 1 48 ARG n 1 49 MET n 1 50 LYS n 1 51 SER n 1 52 ARG n 1 53 HIS n 1 54 LEU n 1 55 LEU n 1 56 ASP n 1 57 MET n 1 58 ASP n 1 59 GLU n 1 60 GLN n 1 61 SER n 1 62 LYS n 1 63 ALA n 1 64 TRP n 1 65 THR n 1 66 ILE n 1 67 TYR n 1 68 ARG n 1 69 TRP n 1 70 THR n 1 71 ILE n 1 72 TYR n 2 1 DT n 2 2 DC n 2 3 DG n 2 4 DC n 2 5 DG n 2 6 DC n 2 7 DG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'C20orf183, DLM1, ZBP1, ZBP1/DLM1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'The Z-DNA is chemically synthesized.' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 HIS 1 -4 ? ? ? A . n A 1 2 MET 2 -3 ? ? ? A . n A 1 3 ALA 3 -2 ? ? ? A . n A 1 4 SER 4 -1 -1 SER SER A . n A 1 5 PRO 5 103 103 PRO PRO A . n A 1 6 GLN 6 104 104 GLN GLN A . n A 1 7 PHE 7 105 105 PHE PHE A . n A 1 8 SER 8 106 106 SER SER A . n A 1 9 GLN 9 107 107 GLN GLN A . n A 1 10 GLN 10 108 108 GLN GLN A . n A 1 11 ARG 11 109 109 ARG ARG A . n A 1 12 GLU 12 110 110 GLU GLU A . n A 1 13 GLU 13 111 111 GLU GLU A . n A 1 14 ASP 14 112 112 ASP ASP A . n A 1 15 ILE 15 113 113 ILE ILE A . n A 1 16 TYR 16 114 114 TYR TYR A . n A 1 17 ARG 17 115 115 ARG ARG A . n A 1 18 PHE 18 116 116 PHE PHE A . n A 1 19 LEU 19 117 117 LEU LEU A . n A 1 20 LYS 20 118 118 LYS LYS A . n A 1 21 ASP 21 119 119 ASP ASP A . n A 1 22 ASN 22 120 120 ASN ASN A . n A 1 23 GLY 23 121 121 GLY GLY A . n A 1 24 PRO 24 122 122 PRO PRO A . n A 1 25 GLN 25 123 123 GLN GLN A . n A 1 26 ARG 26 124 124 ARG ARG A . n A 1 27 ALA 27 125 125 ALA ALA A . n A 1 28 LEU 28 126 126 LEU LEU A . n A 1 29 VAL 29 127 127 VAL VAL A . n A 1 30 ILE 30 128 128 ILE ILE A . n A 1 31 ALA 31 129 129 ALA ALA A . n A 1 32 GLN 32 130 130 GLN GLN A . n A 1 33 ALA 33 131 131 ALA ALA A . n A 1 34 LEU 34 132 132 LEU LEU A . n A 1 35 GLY 35 133 133 GLY GLY A . n A 1 36 MET 36 134 134 MET MET A . n A 1 37 ARG 37 135 135 ARG ARG A . n A 1 38 THR 38 136 136 THR THR A . n A 1 39 ALA 39 137 137 ALA ALA A . n A 1 40 LYS 40 138 138 LYS LYS A . n A 1 41 ASP 41 139 139 ASP ASP A . n A 1 42 VAL 42 140 140 VAL VAL A . n A 1 43 ASN 43 141 141 ASN ASN A . n A 1 44 ARG 44 142 142 ARG ARG A . n A 1 45 ASP 45 143 143 ASP ASP A . n A 1 46 LEU 46 144 144 LEU LEU A . n A 1 47 TYR 47 145 145 TYR TYR A . n A 1 48 ARG 48 146 146 ARG ARG A . n A 1 49 MET 49 147 147 MET MET A . n A 1 50 LYS 50 148 148 LYS LYS A . n A 1 51 SER 51 149 149 SER SER A . n A 1 52 ARG 52 150 150 ARG ARG A . n A 1 53 HIS 53 151 151 HIS HIS A . n A 1 54 LEU 54 152 152 LEU LEU A . n A 1 55 LEU 55 153 153 LEU LEU A . n A 1 56 ASP 56 154 154 ASP ASP A . n A 1 57 MET 57 155 155 MET MET A . n A 1 58 ASP 58 156 156 ASP ASP A . n A 1 59 GLU 59 157 157 GLU GLU A . n A 1 60 GLN 60 158 158 GLN GLN A . n A 1 61 SER 61 159 159 SER SER A . n A 1 62 LYS 62 160 160 LYS LYS A . n A 1 63 ALA 63 161 161 ALA ALA A . n A 1 64 TRP 64 162 162 TRP TRP A . n A 1 65 THR 65 163 163 THR THR A . n A 1 66 ILE 66 164 164 ILE ILE A . n A 1 67 TYR 67 165 165 TYR TYR A . n A 1 68 ARG 68 166 ? ? ? A . n A 1 69 TRP 69 167 ? ? ? A . n A 1 70 THR 70 168 ? ? ? A . n A 1 71 ILE 71 169 ? ? ? A . n A 1 72 TYR 72 170 ? ? ? A . n B 1 1 HIS 1 -4 -4 HIS HIS B . n B 1 2 MET 2 -3 -3 MET MET B . n B 1 3 ALA 3 -2 -2 ALA ALA B . n B 1 4 SER 4 -1 -1 SER SER B . n B 1 5 PRO 5 103 103 PRO PRO B . n B 1 6 GLN 6 104 104 GLN GLN B . n B 1 7 PHE 7 105 105 PHE PHE B . n B 1 8 SER 8 106 106 SER SER B . n B 1 9 GLN 9 107 107 GLN GLN B . n B 1 10 GLN 10 108 108 GLN GLN B . n B 1 11 ARG 11 109 109 ARG ARG B . n B 1 12 GLU 12 110 110 GLU GLU B . n B 1 13 GLU 13 111 111 GLU GLU B . n B 1 14 ASP 14 112 112 ASP ASP B . n B 1 15 ILE 15 113 113 ILE ILE B . n B 1 16 TYR 16 114 114 TYR TYR B . n B 1 17 ARG 17 115 115 ARG ARG B . n B 1 18 PHE 18 116 116 PHE PHE B . n B 1 19 LEU 19 117 117 LEU LEU B . n B 1 20 LYS 20 118 118 LYS LYS B . n B 1 21 ASP 21 119 119 ASP ASP B . n B 1 22 ASN 22 120 120 ASN ASN B . n B 1 23 GLY 23 121 121 GLY GLY B . n B 1 24 PRO 24 122 122 PRO PRO B . n B 1 25 GLN 25 123 123 GLN GLN B . n B 1 26 ARG 26 124 124 ARG ARG B . n B 1 27 ALA 27 125 125 ALA ALA B . n B 1 28 LEU 28 126 126 LEU LEU B . n B 1 29 VAL 29 127 127 VAL VAL B . n B 1 30 ILE 30 128 128 ILE ILE B . n B 1 31 ALA 31 129 129 ALA ALA B . n B 1 32 GLN 32 130 130 GLN GLN B . n B 1 33 ALA 33 131 131 ALA ALA B . n B 1 34 LEU 34 132 132 LEU LEU B . n B 1 35 GLY 35 133 133 GLY GLY B . n B 1 36 MET 36 134 134 MET MET B . n B 1 37 ARG 37 135 135 ARG ARG B . n B 1 38 THR 38 136 136 THR THR B . n B 1 39 ALA 39 137 137 ALA ALA B . n B 1 40 LYS 40 138 138 LYS LYS B . n B 1 41 ASP 41 139 139 ASP ASP B . n B 1 42 VAL 42 140 140 VAL VAL B . n B 1 43 ASN 43 141 141 ASN ASN B . n B 1 44 ARG 44 142 142 ARG ARG B . n B 1 45 ASP 45 143 143 ASP ASP B . n B 1 46 LEU 46 144 144 LEU LEU B . n B 1 47 TYR 47 145 145 TYR TYR B . n B 1 48 ARG 48 146 146 ARG ARG B . n B 1 49 MET 49 147 147 MET MET B . n B 1 50 LYS 50 148 148 LYS LYS B . n B 1 51 SER 51 149 149 SER SER B . n B 1 52 ARG 52 150 150 ARG ARG B . n B 1 53 HIS 53 151 151 HIS HIS B . n B 1 54 LEU 54 152 152 LEU LEU B . n B 1 55 LEU 55 153 153 LEU LEU B . n B 1 56 ASP 56 154 154 ASP ASP B . n B 1 57 MET 57 155 155 MET MET B . n B 1 58 ASP 58 156 156 ASP ASP B . n B 1 59 GLU 59 157 157 GLU GLU B . n B 1 60 GLN 60 158 158 GLN GLN B . n B 1 61 SER 61 159 159 SER SER B . n B 1 62 LYS 62 160 160 LYS LYS B . n B 1 63 ALA 63 161 161 ALA ALA B . n B 1 64 TRP 64 162 162 TRP TRP B . n B 1 65 THR 65 163 163 THR THR B . n B 1 66 ILE 66 164 164 ILE ILE B . n B 1 67 TYR 67 165 165 TYR TYR B . n B 1 68 ARG 68 166 ? ? ? B . n B 1 69 TRP 69 167 ? ? ? B . n B 1 70 THR 70 168 ? ? ? B . n B 1 71 ILE 71 169 ? ? ? B . n B 1 72 TYR 72 170 ? ? ? B . n C 2 1 DT 1 0 ? ? ? C . n C 2 2 DC 2 1 1 DC C C . n C 2 3 DG 3 2 2 DG G C . n C 2 4 DC 4 3 3 DC C C . n C 2 5 DG 5 4 4 DG G C . n C 2 6 DC 6 5 5 DC C C . n C 2 7 DG 7 6 6 DG G C . n D 2 1 DT 1 0 0 DT T D . n D 2 2 DC 2 1 1 DC C D . n D 2 3 DG 3 2 2 DG G D . n D 2 4 DC 4 3 3 DC C D . n D 2 5 DG 5 4 4 DG G D . n D 2 6 DC 6 5 5 DC C D . n D 2 7 DG 7 6 6 DG G D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 HOH 1 11 11 HOH HOH A . E 3 HOH 2 18 18 HOH HOH A . E 3 HOH 3 20 20 HOH HOH A . E 3 HOH 4 27 27 HOH HOH A . E 3 HOH 5 32 32 HOH HOH A . E 3 HOH 6 35 35 HOH HOH A . E 3 HOH 7 40 40 HOH HOH A . E 3 HOH 8 41 41 HOH HOH A . E 3 HOH 9 44 44 HOH HOH A . E 3 HOH 10 45 45 HOH HOH A . E 3 HOH 11 51 51 HOH HOH A . E 3 HOH 12 52 52 HOH HOH A . E 3 HOH 13 53 53 HOH HOH A . E 3 HOH 14 56 56 HOH HOH A . E 3 HOH 15 64 64 HOH HOH A . E 3 HOH 16 70 70 HOH HOH A . E 3 HOH 17 71 71 HOH HOH A . E 3 HOH 18 81 81 HOH HOH A . E 3 HOH 19 83 83 HOH HOH A . E 3 HOH 20 84 84 HOH HOH A . E 3 HOH 21 90 90 HOH HOH A . E 3 HOH 22 94 94 HOH HOH A . E 3 HOH 23 95 95 HOH HOH A . E 3 HOH 24 96 96 HOH HOH A . E 3 HOH 25 100 100 HOH HOH A . E 3 HOH 26 171 171 HOH HOH A . E 3 HOH 27 172 111 HOH HOH A . E 3 HOH 28 173 173 HOH HOH A . E 3 HOH 29 174 121 HOH HOH A . E 3 HOH 30 175 124 HOH HOH A . E 3 HOH 31 176 176 HOH HOH A . E 3 HOH 32 177 177 HOH HOH A . E 3 HOH 33 178 178 HOH HOH A . E 3 HOH 34 179 179 HOH HOH A . E 3 HOH 35 180 126 HOH HOH A . E 3 HOH 36 181 181 HOH HOH A . E 3 HOH 37 182 127 HOH HOH A . E 3 HOH 38 183 183 HOH HOH A . E 3 HOH 39 184 184 HOH HOH A . E 3 HOH 40 185 185 HOH HOH A . E 3 HOH 41 186 186 HOH HOH A . E 3 HOH 42 187 129 HOH HOH A . E 3 HOH 43 188 188 HOH HOH A . E 3 HOH 44 189 131 HOH HOH A . E 3 HOH 45 190 133 HOH HOH A . E 3 HOH 46 191 135 HOH HOH A . E 3 HOH 47 192 192 HOH HOH A . E 3 HOH 48 193 136 HOH HOH A . E 3 HOH 49 194 137 HOH HOH A . E 3 HOH 50 195 138 HOH HOH A . E 3 HOH 51 196 141 HOH HOH A . E 3 HOH 52 197 146 HOH HOH A . E 3 HOH 53 198 148 HOH HOH A . E 3 HOH 54 199 149 HOH HOH A . E 3 HOH 55 200 200 HOH HOH A . E 3 HOH 56 201 150 HOH HOH A . E 3 HOH 57 202 202 HOH HOH A . E 3 HOH 58 203 151 HOH HOH A . E 3 HOH 59 204 204 HOH HOH A . E 3 HOH 60 205 152 HOH HOH A . E 3 HOH 61 206 153 HOH HOH A . E 3 HOH 62 207 207 HOH HOH A . E 3 HOH 63 208 208 HOH HOH A . E 3 HOH 64 209 209 HOH HOH A . E 3 HOH 65 210 210 HOH HOH A . E 3 HOH 66 211 211 HOH HOH A . E 3 HOH 67 212 157 HOH HOH A . E 3 HOH 68 213 213 HOH HOH A . E 3 HOH 69 214 214 HOH HOH A . E 3 HOH 70 215 159 HOH HOH A . E 3 HOH 71 216 160 HOH HOH A . E 3 HOH 72 217 217 HOH HOH A . E 3 HOH 73 218 218 HOH HOH A . E 3 HOH 74 219 161 HOH HOH A . E 3 HOH 75 220 162 HOH HOH A . E 3 HOH 76 221 221 HOH HOH A . E 3 HOH 77 222 195 HOH HOH A . E 3 HOH 78 223 206 HOH HOH A . E 3 HOH 79 227 227 HOH HOH A . E 3 HOH 80 229 229 HOH HOH A . E 3 HOH 81 230 230 HOH HOH A . E 3 HOH 82 231 231 HOH HOH A . E 3 HOH 83 234 234 HOH HOH A . E 3 HOH 84 237 237 HOH HOH A . E 3 HOH 85 238 238 HOH HOH A . E 3 HOH 86 239 239 HOH HOH A . E 3 HOH 87 247 247 HOH HOH A . E 3 HOH 88 248 248 HOH HOH A . E 3 HOH 89 249 249 HOH HOH A . E 3 HOH 90 253 253 HOH HOH A . E 3 HOH 91 258 258 HOH HOH A . E 3 HOH 92 260 260 HOH HOH A . E 3 HOH 93 262 262 HOH HOH A . E 3 HOH 94 264 264 HOH HOH A . E 3 HOH 95 265 265 HOH HOH A . E 3 HOH 96 269 269 HOH HOH A . E 3 HOH 97 270 270 HOH HOH A . E 3 HOH 98 273 273 HOH HOH A . E 3 HOH 99 274 274 HOH HOH A . E 3 HOH 100 276 276 HOH HOH A . E 3 HOH 101 279 279 HOH HOH A . E 3 HOH 102 280 280 HOH HOH A . E 3 HOH 103 281 281 HOH HOH A . E 3 HOH 104 283 283 HOH HOH A . E 3 HOH 105 285 285 HOH HOH A . E 3 HOH 106 286 286 HOH HOH A . E 3 HOH 107 287 287 HOH HOH A . E 3 HOH 108 292 292 HOH HOH A . E 3 HOH 109 297 297 HOH HOH A . E 3 HOH 110 300 300 HOH HOH A . E 3 HOH 111 302 302 HOH HOH A . E 3 HOH 112 304 304 HOH HOH A . E 3 HOH 113 308 308 HOH HOH A . E 3 HOH 114 309 309 HOH HOH A . E 3 HOH 115 312 312 HOH HOH A . E 3 HOH 116 319 319 HOH HOH A . E 3 HOH 117 321 321 HOH HOH A . E 3 HOH 118 325 325 HOH HOH A . E 3 HOH 119 327 327 HOH HOH A . E 3 HOH 120 333 333 HOH HOH A . E 3 HOH 121 334 334 HOH HOH A . E 3 HOH 122 336 336 HOH HOH A . E 3 HOH 123 343 343 HOH HOH A . E 3 HOH 124 350 350 HOH HOH A . E 3 HOH 125 351 351 HOH HOH A . E 3 HOH 126 365 365 HOH HOH A . E 3 HOH 127 366 366 HOH HOH A . E 3 HOH 128 367 367 HOH HOH A . E 3 HOH 129 373 373 HOH HOH A . F 3 HOH 1 1 1 HOH HOH B . F 3 HOH 2 4 4 HOH HOH B . F 3 HOH 3 6 6 HOH HOH B . F 3 HOH 4 25 25 HOH HOH B . F 3 HOH 5 33 33 HOH HOH B . F 3 HOH 6 34 34 HOH HOH B . F 3 HOH 7 37 37 HOH HOH B . F 3 HOH 8 38 38 HOH HOH B . F 3 HOH 9 39 39 HOH HOH B . F 3 HOH 10 46 46 HOH HOH B . F 3 HOH 11 49 49 HOH HOH B . F 3 HOH 12 55 55 HOH HOH B . F 3 HOH 13 59 59 HOH HOH B . F 3 HOH 14 60 60 HOH HOH B . F 3 HOH 15 61 61 HOH HOH B . F 3 HOH 16 62 62 HOH HOH B . F 3 HOH 17 65 65 HOH HOH B . F 3 HOH 18 66 66 HOH HOH B . F 3 HOH 19 68 68 HOH HOH B . F 3 HOH 20 69 69 HOH HOH B . F 3 HOH 21 72 72 HOH HOH B . F 3 HOH 22 73 73 HOH HOH B . F 3 HOH 23 80 80 HOH HOH B . F 3 HOH 24 87 87 HOH HOH B . F 3 HOH 25 88 88 HOH HOH B . F 3 HOH 26 97 97 HOH HOH B . F 3 HOH 27 98 98 HOH HOH B . F 3 HOH 28 99 99 HOH HOH B . F 3 HOH 29 101 101 HOH HOH B . F 3 HOH 30 102 102 HOH HOH B . F 3 HOH 31 171 104 HOH HOH B . F 3 HOH 32 172 105 HOH HOH B . F 3 HOH 33 173 106 HOH HOH B . F 3 HOH 34 174 174 HOH HOH B . F 3 HOH 35 175 175 HOH HOH B . F 3 HOH 36 176 109 HOH HOH B . F 3 HOH 37 177 113 HOH HOH B . F 3 HOH 38 178 114 HOH HOH B . F 3 HOH 39 179 115 HOH HOH B . F 3 HOH 40 180 180 HOH HOH B . F 3 HOH 41 181 116 HOH HOH B . F 3 HOH 42 182 182 HOH HOH B . F 3 HOH 43 183 122 HOH HOH B . F 3 HOH 44 184 125 HOH HOH B . F 3 HOH 45 185 128 HOH HOH B . F 3 HOH 46 186 130 HOH HOH B . F 3 HOH 47 187 187 HOH HOH B . F 3 HOH 48 188 132 HOH HOH B . F 3 HOH 49 189 134 HOH HOH B . F 3 HOH 50 190 190 HOH HOH B . F 3 HOH 51 191 191 HOH HOH B . F 3 HOH 52 192 143 HOH HOH B . F 3 HOH 53 193 193 HOH HOH B . F 3 HOH 54 194 144 HOH HOH B . F 3 HOH 55 196 196 HOH HOH B . F 3 HOH 56 197 197 HOH HOH B . F 3 HOH 57 198 145 HOH HOH B . F 3 HOH 58 199 199 HOH HOH B . F 3 HOH 59 200 147 HOH HOH B . F 3 HOH 60 201 201 HOH HOH B . F 3 HOH 61 202 154 HOH HOH B . F 3 HOH 62 203 155 HOH HOH B . F 3 HOH 63 204 156 HOH HOH B . F 3 HOH 64 205 205 HOH HOH B . F 3 HOH 65 207 158 HOH HOH B . F 3 HOH 66 208 165 HOH HOH B . F 3 HOH 67 209 166 HOH HOH B . F 3 HOH 68 210 168 HOH HOH B . F 3 HOH 69 212 212 HOH HOH B . F 3 HOH 70 216 216 HOH HOH B . F 3 HOH 71 222 222 HOH HOH B . F 3 HOH 72 223 223 HOH HOH B . F 3 HOH 73 224 224 HOH HOH B . F 3 HOH 74 226 226 HOH HOH B . F 3 HOH 75 228 228 HOH HOH B . F 3 HOH 76 232 232 HOH HOH B . F 3 HOH 77 233 233 HOH HOH B . F 3 HOH 78 235 235 HOH HOH B . F 3 HOH 79 236 236 HOH HOH B . F 3 HOH 80 240 240 HOH HOH B . F 3 HOH 81 243 243 HOH HOH B . F 3 HOH 82 244 244 HOH HOH B . F 3 HOH 83 245 245 HOH HOH B . F 3 HOH 84 246 246 HOH HOH B . F 3 HOH 85 250 250 HOH HOH B . F 3 HOH 86 252 252 HOH HOH B . F 3 HOH 87 254 254 HOH HOH B . F 3 HOH 88 255 255 HOH HOH B . F 3 HOH 89 256 256 HOH HOH B . F 3 HOH 90 257 257 HOH HOH B . F 3 HOH 91 263 263 HOH HOH B . F 3 HOH 92 266 266 HOH HOH B . F 3 HOH 93 268 268 HOH HOH B . F 3 HOH 94 272 272 HOH HOH B . F 3 HOH 95 275 275 HOH HOH B . F 3 HOH 96 277 277 HOH HOH B . F 3 HOH 97 278 278 HOH HOH B . F 3 HOH 98 294 294 HOH HOH B . F 3 HOH 99 301 301 HOH HOH B . F 3 HOH 100 303 303 HOH HOH B . F 3 HOH 101 305 305 HOH HOH B . F 3 HOH 102 306 306 HOH HOH B . F 3 HOH 103 307 307 HOH HOH B . F 3 HOH 104 310 310 HOH HOH B . F 3 HOH 105 311 311 HOH HOH B . F 3 HOH 106 315 315 HOH HOH B . F 3 HOH 107 316 316 HOH HOH B . F 3 HOH 108 318 318 HOH HOH B . F 3 HOH 109 326 326 HOH HOH B . F 3 HOH 110 328 328 HOH HOH B . F 3 HOH 111 329 329 HOH HOH B . F 3 HOH 112 330 330 HOH HOH B . F 3 HOH 113 331 331 HOH HOH B . F 3 HOH 114 332 332 HOH HOH B . F 3 HOH 115 335 335 HOH HOH B . F 3 HOH 116 337 337 HOH HOH B . F 3 HOH 117 341 341 HOH HOH B . F 3 HOH 118 344 344 HOH HOH B . F 3 HOH 119 346 346 HOH HOH B . F 3 HOH 120 349 349 HOH HOH B . F 3 HOH 121 352 352 HOH HOH B . F 3 HOH 122 353 353 HOH HOH B . F 3 HOH 123 355 355 HOH HOH B . F 3 HOH 124 359 359 HOH HOH B . F 3 HOH 125 362 362 HOH HOH B . F 3 HOH 126 363 363 HOH HOH B . F 3 HOH 127 364 364 HOH HOH B . F 3 HOH 128 369 369 HOH HOH B . F 3 HOH 129 380 380 HOH HOH B . G 3 HOH 1 7 2 HOH HOH C . G 3 HOH 2 9 9 HOH HOH C . G 3 HOH 3 10 10 HOH HOH C . G 3 HOH 4 11 3 HOH HOH C . G 3 HOH 5 12 12 HOH HOH C . G 3 HOH 6 13 13 HOH HOH C . G 3 HOH 7 14 5 HOH HOH C . G 3 HOH 8 17 17 HOH HOH C . G 3 HOH 9 26 26 HOH HOH C . G 3 HOH 10 28 28 HOH HOH C . G 3 HOH 11 31 31 HOH HOH C . G 3 HOH 12 36 36 HOH HOH C . G 3 HOH 13 42 42 HOH HOH C . G 3 HOH 14 48 48 HOH HOH C . G 3 HOH 15 54 54 HOH HOH C . G 3 HOH 16 76 76 HOH HOH C . G 3 HOH 17 77 77 HOH HOH C . G 3 HOH 18 78 78 HOH HOH C . G 3 HOH 19 79 79 HOH HOH C . G 3 HOH 20 85 85 HOH HOH C . G 3 HOH 21 93 93 HOH HOH C . G 3 HOH 22 110 110 HOH HOH C . G 3 HOH 23 112 112 HOH HOH C . G 3 HOH 24 139 139 HOH HOH C . G 3 HOH 25 167 167 HOH HOH C . G 3 HOH 26 169 169 HOH HOH C . G 3 HOH 27 194 194 HOH HOH C . G 3 HOH 28 203 203 HOH HOH C . G 3 HOH 29 220 220 HOH HOH C . G 3 HOH 30 225 225 HOH HOH C . G 3 HOH 31 241 241 HOH HOH C . G 3 HOH 32 251 251 HOH HOH C . G 3 HOH 33 259 259 HOH HOH C . G 3 HOH 34 282 282 HOH HOH C . G 3 HOH 35 296 296 HOH HOH C . G 3 HOH 36 299 299 HOH HOH C . G 3 HOH 37 313 313 HOH HOH C . G 3 HOH 38 320 320 HOH HOH C . G 3 HOH 39 322 322 HOH HOH C . G 3 HOH 40 323 323 HOH HOH C . G 3 HOH 41 347 347 HOH HOH C . G 3 HOH 42 354 354 HOH HOH C . G 3 HOH 43 381 381 HOH HOH C . H 3 HOH 1 7 7 HOH HOH D . H 3 HOH 2 8 8 HOH HOH D . H 3 HOH 3 14 14 HOH HOH D . H 3 HOH 4 15 15 HOH HOH D . H 3 HOH 5 16 16 HOH HOH D . H 3 HOH 6 19 19 HOH HOH D . H 3 HOH 7 21 21 HOH HOH D . H 3 HOH 8 22 22 HOH HOH D . H 3 HOH 9 23 23 HOH HOH D . H 3 HOH 10 24 24 HOH HOH D . H 3 HOH 11 29 29 HOH HOH D . H 3 HOH 12 30 30 HOH HOH D . H 3 HOH 13 43 43 HOH HOH D . H 3 HOH 14 47 47 HOH HOH D . H 3 HOH 15 50 50 HOH HOH D . H 3 HOH 16 57 57 HOH HOH D . H 3 HOH 17 58 58 HOH HOH D . H 3 HOH 18 63 63 HOH HOH D . H 3 HOH 19 67 67 HOH HOH D . H 3 HOH 20 74 74 HOH HOH D . H 3 HOH 21 75 75 HOH HOH D . H 3 HOH 22 82 82 HOH HOH D . H 3 HOH 23 86 86 HOH HOH D . H 3 HOH 24 89 89 HOH HOH D . H 3 HOH 25 91 91 HOH HOH D . H 3 HOH 26 92 92 HOH HOH D . H 3 HOH 27 103 103 HOH HOH D . H 3 HOH 28 107 107 HOH HOH D . H 3 HOH 29 108 108 HOH HOH D . H 3 HOH 30 117 117 HOH HOH D . H 3 HOH 31 118 118 HOH HOH D . H 3 HOH 32 119 119 HOH HOH D . H 3 HOH 33 120 120 HOH HOH D . H 3 HOH 34 123 123 HOH HOH D . H 3 HOH 35 140 140 HOH HOH D . H 3 HOH 36 142 142 HOH HOH D . H 3 HOH 37 163 163 HOH HOH D . H 3 HOH 38 164 164 HOH HOH D . H 3 HOH 39 170 170 HOH HOH D . H 3 HOH 40 172 172 HOH HOH D . H 3 HOH 41 189 189 HOH HOH D . H 3 HOH 42 198 198 HOH HOH D . H 3 HOH 43 215 215 HOH HOH D . H 3 HOH 44 219 219 HOH HOH D . H 3 HOH 45 242 242 HOH HOH D . H 3 HOH 46 261 261 HOH HOH D . H 3 HOH 47 284 284 HOH HOH D . H 3 HOH 48 317 317 HOH HOH D . H 3 HOH 49 348 348 HOH HOH D . H 3 HOH 50 361 361 HOH HOH D . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MAR345dtb 'data collection' . ? 1 autoSHARP phasing . ? 2 REFMAC refinement 5.1.24 ? 3 HKL-2000 'data reduction' . ? 4 SCALEPACK 'data scaling' . ? 5 # _cell.entry_id 3EYI _cell.length_a 29.530 _cell.length_b 58.249 _cell.length_c 88.609 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3EYI _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3EYI _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.76 _exptl_crystal.density_percent_sol 30.16 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 295 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pdbx_details '0.1M Tris-HCl pH 8.5, 31-33% PEG 4000, 200-260 mM sodium acetate, VAPOR DIFFUSION, HANGING DROP, temperature 295K' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 Tris-HCl ? ? ? 1 2 1 'PEG 4000' ? ? ? 1 3 1 'sodium acetate' ? ? ? 1 4 2 Tris-HCl ? ? ? 1 5 2 'PEG 4000' ? ? ? 1 6 2 'sodium acetate' ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MAR CCD 165 mm' _diffrn_detector.pdbx_collection_date 2005-01-01 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.9795 1.0 2 0.9798 1.0 3 0.9721 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SPRING-8 BEAMLINE BL41XU' _diffrn_source.pdbx_synchrotron_site SPring-8 _diffrn_source.pdbx_synchrotron_beamline BL41XU _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.9795, 0.9798, 0.9721' # _reflns.entry_id 3EYI _reflns.observed_criterion_sigma_I 2 _reflns.observed_criterion_sigma_F 2 _reflns.d_resolution_low 50 _reflns.d_resolution_high 1.45 _reflns.number_obs 26766 _reflns.number_all 27940 _reflns.percent_possible_obs 95.8 _reflns.pdbx_Rmerge_I_obs 0.075 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.45 _reflns_shell.d_res_low 1.5 _reflns_shell.percent_possible_all 84.3 _reflns_shell.Rmerge_I_obs 0.156 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 8.9 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 2301 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3EYI _refine.ls_number_reflns_obs 23803 _refine.ls_number_reflns_all 26420 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.00 _refine.ls_d_res_high 1.45 _refine.ls_percent_reflns_obs 94.70 _refine.ls_R_factor_obs 0.15719 _refine.ls_R_factor_all 0.15719 _refine.ls_R_factor_R_work 0.15322 _refine.ls_R_factor_R_free 0.19350 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.9 _refine.ls_number_reflns_R_free 2617 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.967 _refine.correlation_coeff_Fo_to_Fc_free 0.948 _refine.B_iso_mean 15.757 _refine.aniso_B[1][1] 0.06 _refine.aniso_B[2][2] -0.23 _refine.aniso_B[3][3] 0.17 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.074 _refine.pdbx_overall_ESU_R_Free 0.079 _refine.overall_SU_ML 0.052 _refine.overall_SU_B 1.349 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1095 _refine_hist.pdbx_number_atoms_nucleic_acid 263 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 351 _refine_hist.number_atoms_total 1709 _refine_hist.d_res_high 1.45 _refine_hist.d_res_low 20.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.018 0.021 ? 1405 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.649 2.189 ? 1932 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.457 5.000 ? 127 'X-RAY DIFFRACTION' ? r_chiral_restr 0.091 0.200 ? 192 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.010 0.020 ? 980 'X-RAY DIFFRACTION' ? r_nbd_refined 0.275 0.200 ? 624 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.224 0.200 ? 243 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.213 0.200 ? 68 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.226 0.200 ? 67 'X-RAY DIFFRACTION' ? r_mcbond_it 0.970 1.500 ? 653 'X-RAY DIFFRACTION' ? r_mcangle_it 1.755 2.000 ? 1039 'X-RAY DIFFRACTION' ? r_scbond_it 2.413 3.000 ? 752 'X-RAY DIFFRACTION' ? r_scangle_it 3.440 4.500 ? 893 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.450 _refine_ls_shell.d_res_low 1.487 _refine_ls_shell.number_reflns_R_work 1678 _refine_ls_shell.R_factor_R_work 0.198 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.228 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 182 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 3EYI _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3EYI _struct.title 'The crystal structure of the second Z-DNA binding domain of human DAI (ZBP1) in complex with Z-DNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3EYI _struct_keywords.pdbx_keywords 'DNA Binding Protein/DNA' _struct_keywords.text 'Alternative splicing, DNA-binding, Polymorphism, DNA Binding Protein-Z-DNA COMPLEX, DNA Binding Protein-DNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP ZBP1_HUMAN Q9H171 1 PQFSQQREEDIYRFLKDNGPQRALVIAQALGMRTAKDVNRDLYRMKSRHLLDMDEQSKAWTIYR 103 ? 2 PDB 3EYI 3EYI 2 TCGCGCG 1 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3EYI A 5 ? 68 ? Q9H171 103 ? 166 ? 103 166 2 1 3EYI B 5 ? 68 ? Q9H171 103 ? 166 ? 103 166 3 2 3EYI C 1 ? 7 ? 3EYI 0 ? 6 ? 0 6 4 2 3EYI D 1 ? 7 ? 3EYI 0 ? 6 ? 0 6 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3EYI HIS A 1 ? UNP Q9H171 ? ? 'expression tag' -4 1 1 3EYI MET A 2 ? UNP Q9H171 ? ? 'expression tag' -3 2 1 3EYI ALA A 3 ? UNP Q9H171 ? ? 'expression tag' -2 3 1 3EYI SER A 4 ? UNP Q9H171 ? ? 'expression tag' -1 4 1 3EYI TRP A 69 ? UNP Q9H171 ? ? 'expression tag' 167 5 1 3EYI THR A 70 ? UNP Q9H171 ? ? 'expression tag' 168 6 1 3EYI ILE A 71 ? UNP Q9H171 ? ? 'expression tag' 169 7 1 3EYI TYR A 72 ? UNP Q9H171 ? ? 'expression tag' 170 8 2 3EYI HIS B 1 ? UNP Q9H171 ? ? 'expression tag' -4 9 2 3EYI MET B 2 ? UNP Q9H171 ? ? 'expression tag' -3 10 2 3EYI ALA B 3 ? UNP Q9H171 ? ? 'expression tag' -2 11 2 3EYI SER B 4 ? UNP Q9H171 ? ? 'expression tag' -1 12 2 3EYI TRP B 69 ? UNP Q9H171 ? ? 'expression tag' 167 13 2 3EYI THR B 70 ? UNP Q9H171 ? ? 'expression tag' 168 14 2 3EYI ILE B 71 ? UNP Q9H171 ? ? 'expression tag' 169 15 2 3EYI TYR B 72 ? UNP Q9H171 ? ? 'expression tag' 170 16 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2130 ? 1 MORE -20 ? 1 'SSA (A^2)' 10490 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLN A 9 ? GLY A 23 ? GLN A 107 GLY A 121 1 ? 15 HELX_P HELX_P2 2 ALA A 27 ? LEU A 34 ? ALA A 125 LEU A 132 1 ? 8 HELX_P HELX_P3 3 THR A 38 ? ASP A 41 ? THR A 136 ASP A 139 5 ? 4 HELX_P HELX_P4 4 VAL A 42 ? ARG A 52 ? VAL A 140 ARG A 150 1 ? 11 HELX_P HELX_P5 5 GLN B 9 ? GLY B 23 ? GLN B 107 GLY B 121 1 ? 15 HELX_P HELX_P6 6 ALA B 27 ? LEU B 34 ? ALA B 125 LEU B 132 1 ? 8 HELX_P HELX_P7 7 THR B 38 ? ASP B 41 ? THR B 136 ASP B 139 5 ? 4 HELX_P HELX_P8 8 VAL B 42 ? ARG B 52 ? VAL B 140 ARG B 150 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? C DC 2 N3 ? ? ? 1_555 D DG 7 N1 ? ? C DC 1 D DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? C DC 2 N4 ? ? ? 1_555 D DG 7 O6 ? ? C DC 1 D DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? C DC 2 O2 ? ? ? 1_555 D DG 7 N2 ? ? C DC 1 D DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? C DG 3 N1 ? ? ? 1_555 D DC 6 N3 ? ? C DG 2 D DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? C DG 3 N2 ? ? ? 1_555 D DC 6 O2 ? ? C DG 2 D DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? C DG 3 O6 ? ? ? 1_555 D DC 6 N4 ? ? C DG 2 D DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? C DC 4 N3 ? ? ? 1_555 D DG 5 N1 ? ? C DC 3 D DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? C DC 4 N4 ? ? ? 1_555 D DG 5 O6 ? ? C DC 3 D DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? C DC 4 O2 ? ? ? 1_555 D DG 5 N2 ? ? C DC 3 D DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? C DG 5 N1 ? ? ? 1_555 D DC 4 N3 ? ? C DG 4 D DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? C DG 5 N2 ? ? ? 1_555 D DC 4 O2 ? ? C DG 4 D DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? C DG 5 O6 ? ? ? 1_555 D DC 4 N4 ? ? C DG 4 D DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? C DC 6 N3 ? ? ? 1_555 D DG 3 N1 ? ? C DC 5 D DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? C DC 6 N4 ? ? ? 1_555 D DG 3 O6 ? ? C DC 5 D DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? C DC 6 O2 ? ? ? 1_555 D DG 3 N2 ? ? C DC 5 D DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? C DG 7 N1 ? ? ? 1_555 D DC 2 N3 ? ? C DG 6 D DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? C DG 7 N2 ? ? ? 1_555 D DC 2 O2 ? ? C DG 6 D DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? C DG 7 O6 ? ? ? 1_555 D DC 2 N4 ? ? C DG 6 D DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 SER 4 B . ? SER -1 B PRO 5 B ? PRO 103 B 1 2.75 2 GLY 23 B . ? GLY 121 B PRO 24 B ? PRO 122 B 1 -2.44 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLN A 25 ? ARG A 26 ? GLN A 123 ARG A 124 A 2 ALA A 63 ? ILE A 66 ? ALA A 161 ILE A 164 A 3 LEU A 55 ? MET A 57 ? LEU A 153 MET A 155 B 1 GLN B 25 ? ARG B 26 ? GLN B 123 ARG B 124 B 2 ALA B 63 ? ILE B 66 ? ALA B 161 ILE B 164 B 3 LEU B 55 ? MET B 57 ? LEU B 153 MET B 155 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLN A 25 ? N GLN A 123 O TRP A 64 ? O TRP A 162 A 2 3 O THR A 65 ? O THR A 163 N ASP A 56 ? N ASP A 154 B 1 2 N GLN B 25 ? N GLN B 123 O TRP B 64 ? O TRP B 162 B 2 3 O THR B 65 ? O THR B 163 N ASP B 56 ? N ASP B 154 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 SD B MET -3 ? ? O B HOH 363 ? ? 1.75 2 1 N B HIS -4 ? ? O B HOH 364 ? ? 1.87 3 1 CG B MET 155 ? ? O B HOH 362 ? ? 1.90 4 1 CG B MET -3 ? ? O B HOH 363 ? ? 1.91 5 1 CE B MET 155 ? ? O B HOH 362 ? ? 1.96 6 1 O D HOH 119 ? ? O D HOH 361 ? ? 2.11 7 1 O B HOH 39 ? ? O B HOH 353 ? ? 2.14 8 1 NH2 A ARG 146 ? ? O A HOH 367 ? ? 2.14 9 1 CE B MET -3 ? ? O B HOH 363 ? ? 2.17 10 1 OD1 A ASN 120 ? ? O A HOH 366 ? ? 2.17 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 53 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 B _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 369 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 4_565 _pdbx_validate_symm_contact.dist 1.79 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 C A SER -1 ? ? N A PRO 103 ? ? 1.592 1.338 0.254 0.019 Y 2 1 C B SER -1 ? ? N B PRO 103 ? ? 1.584 1.338 0.246 0.019 Y # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE B ARG 109 ? ? CZ B ARG 109 ? ? NH1 B ARG 109 ? ? 124.59 120.30 4.29 0.50 N 2 1 NE B ARG 109 ? ? CZ B ARG 109 ? ? NH2 B ARG 109 ? ? 116.73 120.30 -3.57 0.50 N 3 1 C5 C DC 1 ? ? C6 C DC 1 ? ? N1 C DC 1 ? ? 117.93 121.00 -3.07 0.50 N 4 1 C4 C DG 2 ? ? C5 C DG 2 ? ? N7 C DG 2 ? ? 113.37 110.80 2.57 0.40 N 5 1 "O4'" D DC 1 ? ? "C1'" D DC 1 ? ? N1 D DC 1 ? ? 110.26 108.30 1.96 0.30 N 6 1 "O4'" D DG 2 ? ? "C1'" D DG 2 ? ? N9 D DG 2 ? ? 103.71 108.00 -4.29 0.70 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 MET A 134 ? ? -106.14 -161.85 2 1 MET B 134 ? ? -106.86 -160.34 # _pdbx_validate_main_chain_plane.id 1 _pdbx_validate_main_chain_plane.PDB_model_num 1 _pdbx_validate_main_chain_plane.auth_comp_id SER _pdbx_validate_main_chain_plane.auth_asym_id A _pdbx_validate_main_chain_plane.auth_seq_id -1 _pdbx_validate_main_chain_plane.PDB_ins_code ? _pdbx_validate_main_chain_plane.label_alt_id ? _pdbx_validate_main_chain_plane.improper_torsion_angle -17.25 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A HIS -4 ? A HIS 1 2 1 Y 1 A MET -3 ? A MET 2 3 1 Y 1 A ALA -2 ? A ALA 3 4 1 Y 1 A ARG 166 ? A ARG 68 5 1 Y 1 A TRP 167 ? A TRP 69 6 1 Y 1 A THR 168 ? A THR 70 7 1 Y 1 A ILE 169 ? A ILE 71 8 1 Y 1 A TYR 170 ? A TYR 72 9 1 Y 1 B ARG 166 ? B ARG 68 10 1 Y 1 B TRP 167 ? B TRP 69 11 1 Y 1 B THR 168 ? B THR 70 12 1 Y 1 B ILE 169 ? B ILE 71 13 1 Y 1 B TYR 170 ? B TYR 72 14 1 Y 1 C DT 0 ? C DT 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 DC OP3 O N N 74 DC P P N N 75 DC OP1 O N N 76 DC OP2 O N N 77 DC "O5'" O N N 78 DC "C5'" C N N 79 DC "C4'" C N R 80 DC "O4'" O N N 81 DC "C3'" C N S 82 DC "O3'" O N N 83 DC "C2'" C N N 84 DC "C1'" C N R 85 DC N1 N N N 86 DC C2 C N N 87 DC O2 O N N 88 DC N3 N N N 89 DC C4 C N N 90 DC N4 N N N 91 DC C5 C N N 92 DC C6 C N N 93 DC HOP3 H N N 94 DC HOP2 H N N 95 DC "H5'" H N N 96 DC "H5''" H N N 97 DC "H4'" H N N 98 DC "H3'" H N N 99 DC "HO3'" H N N 100 DC "H2'" H N N 101 DC "H2''" H N N 102 DC "H1'" H N N 103 DC H41 H N N 104 DC H42 H N N 105 DC H5 H N N 106 DC H6 H N N 107 DG OP3 O N N 108 DG P P N N 109 DG OP1 O N N 110 DG OP2 O N N 111 DG "O5'" O N N 112 DG "C5'" C N N 113 DG "C4'" C N R 114 DG "O4'" O N N 115 DG "C3'" C N S 116 DG "O3'" O N N 117 DG "C2'" C N N 118 DG "C1'" C N R 119 DG N9 N Y N 120 DG C8 C Y N 121 DG N7 N Y N 122 DG C5 C Y N 123 DG C6 C N N 124 DG O6 O N N 125 DG N1 N N N 126 DG C2 C N N 127 DG N2 N N N 128 DG N3 N N N 129 DG C4 C Y N 130 DG HOP3 H N N 131 DG HOP2 H N N 132 DG "H5'" H N N 133 DG "H5''" H N N 134 DG "H4'" H N N 135 DG "H3'" H N N 136 DG "HO3'" H N N 137 DG "H2'" H N N 138 DG "H2''" H N N 139 DG "H1'" H N N 140 DG H8 H N N 141 DG H1 H N N 142 DG H21 H N N 143 DG H22 H N N 144 DT OP3 O N N 145 DT P P N N 146 DT OP1 O N N 147 DT OP2 O N N 148 DT "O5'" O N N 149 DT "C5'" C N N 150 DT "C4'" C N R 151 DT "O4'" O N N 152 DT "C3'" C N S 153 DT "O3'" O N N 154 DT "C2'" C N N 155 DT "C1'" C N R 156 DT N1 N N N 157 DT C2 C N N 158 DT O2 O N N 159 DT N3 N N N 160 DT C4 C N N 161 DT O4 O N N 162 DT C5 C N N 163 DT C7 C N N 164 DT C6 C N N 165 DT HOP3 H N N 166 DT HOP2 H N N 167 DT "H5'" H N N 168 DT "H5''" H N N 169 DT "H4'" H N N 170 DT "H3'" H N N 171 DT "HO3'" H N N 172 DT "H2'" H N N 173 DT "H2''" H N N 174 DT "H1'" H N N 175 DT H3 H N N 176 DT H71 H N N 177 DT H72 H N N 178 DT H73 H N N 179 DT H6 H N N 180 GLN N N N N 181 GLN CA C N S 182 GLN C C N N 183 GLN O O N N 184 GLN CB C N N 185 GLN CG C N N 186 GLN CD C N N 187 GLN OE1 O N N 188 GLN NE2 N N N 189 GLN OXT O N N 190 GLN H H N N 191 GLN H2 H N N 192 GLN HA H N N 193 GLN HB2 H N N 194 GLN HB3 H N N 195 GLN HG2 H N N 196 GLN HG3 H N N 197 GLN HE21 H N N 198 GLN HE22 H N N 199 GLN HXT H N N 200 GLU N N N N 201 GLU CA C N S 202 GLU C C N N 203 GLU O O N N 204 GLU CB C N N 205 GLU CG C N N 206 GLU CD C N N 207 GLU OE1 O N N 208 GLU OE2 O N N 209 GLU OXT O N N 210 GLU H H N N 211 GLU H2 H N N 212 GLU HA H N N 213 GLU HB2 H N N 214 GLU HB3 H N N 215 GLU HG2 H N N 216 GLU HG3 H N N 217 GLU HE2 H N N 218 GLU HXT H N N 219 GLY N N N N 220 GLY CA C N N 221 GLY C C N N 222 GLY O O N N 223 GLY OXT O N N 224 GLY H H N N 225 GLY H2 H N N 226 GLY HA2 H N N 227 GLY HA3 H N N 228 GLY HXT H N N 229 HIS N N N N 230 HIS CA C N S 231 HIS C C N N 232 HIS O O N N 233 HIS CB C N N 234 HIS CG C Y N 235 HIS ND1 N Y N 236 HIS CD2 C Y N 237 HIS CE1 C Y N 238 HIS NE2 N Y N 239 HIS OXT O N N 240 HIS H H N N 241 HIS H2 H N N 242 HIS HA H N N 243 HIS HB2 H N N 244 HIS HB3 H N N 245 HIS HD1 H N N 246 HIS HD2 H N N 247 HIS HE1 H N N 248 HIS HE2 H N N 249 HIS HXT H N N 250 HOH O O N N 251 HOH H1 H N N 252 HOH H2 H N N 253 ILE N N N N 254 ILE CA C N S 255 ILE C C N N 256 ILE O O N N 257 ILE CB C N S 258 ILE CG1 C N N 259 ILE CG2 C N N 260 ILE CD1 C N N 261 ILE OXT O N N 262 ILE H H N N 263 ILE H2 H N N 264 ILE HA H N N 265 ILE HB H N N 266 ILE HG12 H N N 267 ILE HG13 H N N 268 ILE HG21 H N N 269 ILE HG22 H N N 270 ILE HG23 H N N 271 ILE HD11 H N N 272 ILE HD12 H N N 273 ILE HD13 H N N 274 ILE HXT H N N 275 LEU N N N N 276 LEU CA C N S 277 LEU C C N N 278 LEU O O N N 279 LEU CB C N N 280 LEU CG C N N 281 LEU CD1 C N N 282 LEU CD2 C N N 283 LEU OXT O N N 284 LEU H H N N 285 LEU H2 H N N 286 LEU HA H N N 287 LEU HB2 H N N 288 LEU HB3 H N N 289 LEU HG H N N 290 LEU HD11 H N N 291 LEU HD12 H N N 292 LEU HD13 H N N 293 LEU HD21 H N N 294 LEU HD22 H N N 295 LEU HD23 H N N 296 LEU HXT H N N 297 LYS N N N N 298 LYS CA C N S 299 LYS C C N N 300 LYS O O N N 301 LYS CB C N N 302 LYS CG C N N 303 LYS CD C N N 304 LYS CE C N N 305 LYS NZ N N N 306 LYS OXT O N N 307 LYS H H N N 308 LYS H2 H N N 309 LYS HA H N N 310 LYS HB2 H N N 311 LYS HB3 H N N 312 LYS HG2 H N N 313 LYS HG3 H N N 314 LYS HD2 H N N 315 LYS HD3 H N N 316 LYS HE2 H N N 317 LYS HE3 H N N 318 LYS HZ1 H N N 319 LYS HZ2 H N N 320 LYS HZ3 H N N 321 LYS HXT H N N 322 MET N N N N 323 MET CA C N S 324 MET C C N N 325 MET O O N N 326 MET CB C N N 327 MET CG C N N 328 MET SD S N N 329 MET CE C N N 330 MET OXT O N N 331 MET H H N N 332 MET H2 H N N 333 MET HA H N N 334 MET HB2 H N N 335 MET HB3 H N N 336 MET HG2 H N N 337 MET HG3 H N N 338 MET HE1 H N N 339 MET HE2 H N N 340 MET HE3 H N N 341 MET HXT H N N 342 PHE N N N N 343 PHE CA C N S 344 PHE C C N N 345 PHE O O N N 346 PHE CB C N N 347 PHE CG C Y N 348 PHE CD1 C Y N 349 PHE CD2 C Y N 350 PHE CE1 C Y N 351 PHE CE2 C Y N 352 PHE CZ C Y N 353 PHE OXT O N N 354 PHE H H N N 355 PHE H2 H N N 356 PHE HA H N N 357 PHE HB2 H N N 358 PHE HB3 H N N 359 PHE HD1 H N N 360 PHE HD2 H N N 361 PHE HE1 H N N 362 PHE HE2 H N N 363 PHE HZ H N N 364 PHE HXT H N N 365 PRO N N N N 366 PRO CA C N S 367 PRO C C N N 368 PRO O O N N 369 PRO CB C N N 370 PRO CG C N N 371 PRO CD C N N 372 PRO OXT O N N 373 PRO H H N N 374 PRO HA H N N 375 PRO HB2 H N N 376 PRO HB3 H N N 377 PRO HG2 H N N 378 PRO HG3 H N N 379 PRO HD2 H N N 380 PRO HD3 H N N 381 PRO HXT H N N 382 SER N N N N 383 SER CA C N S 384 SER C C N N 385 SER O O N N 386 SER CB C N N 387 SER OG O N N 388 SER OXT O N N 389 SER H H N N 390 SER H2 H N N 391 SER HA H N N 392 SER HB2 H N N 393 SER HB3 H N N 394 SER HG H N N 395 SER HXT H N N 396 THR N N N N 397 THR CA C N S 398 THR C C N N 399 THR O O N N 400 THR CB C N R 401 THR OG1 O N N 402 THR CG2 C N N 403 THR OXT O N N 404 THR H H N N 405 THR H2 H N N 406 THR HA H N N 407 THR HB H N N 408 THR HG1 H N N 409 THR HG21 H N N 410 THR HG22 H N N 411 THR HG23 H N N 412 THR HXT H N N 413 TRP N N N N 414 TRP CA C N S 415 TRP C C N N 416 TRP O O N N 417 TRP CB C N N 418 TRP CG C Y N 419 TRP CD1 C Y N 420 TRP CD2 C Y N 421 TRP NE1 N Y N 422 TRP CE2 C Y N 423 TRP CE3 C Y N 424 TRP CZ2 C Y N 425 TRP CZ3 C Y N 426 TRP CH2 C Y N 427 TRP OXT O N N 428 TRP H H N N 429 TRP H2 H N N 430 TRP HA H N N 431 TRP HB2 H N N 432 TRP HB3 H N N 433 TRP HD1 H N N 434 TRP HE1 H N N 435 TRP HE3 H N N 436 TRP HZ2 H N N 437 TRP HZ3 H N N 438 TRP HH2 H N N 439 TRP HXT H N N 440 TYR N N N N 441 TYR CA C N S 442 TYR C C N N 443 TYR O O N N 444 TYR CB C N N 445 TYR CG C Y N 446 TYR CD1 C Y N 447 TYR CD2 C Y N 448 TYR CE1 C Y N 449 TYR CE2 C Y N 450 TYR CZ C Y N 451 TYR OH O N N 452 TYR OXT O N N 453 TYR H H N N 454 TYR H2 H N N 455 TYR HA H N N 456 TYR HB2 H N N 457 TYR HB3 H N N 458 TYR HD1 H N N 459 TYR HD2 H N N 460 TYR HE1 H N N 461 TYR HE2 H N N 462 TYR HH H N N 463 TYR HXT H N N 464 VAL N N N N 465 VAL CA C N S 466 VAL C C N N 467 VAL O O N N 468 VAL CB C N N 469 VAL CG1 C N N 470 VAL CG2 C N N 471 VAL OXT O N N 472 VAL H H N N 473 VAL H2 H N N 474 VAL HA H N N 475 VAL HB H N N 476 VAL HG11 H N N 477 VAL HG12 H N N 478 VAL HG13 H N N 479 VAL HG21 H N N 480 VAL HG22 H N N 481 VAL HG23 H N N 482 VAL HXT H N N 483 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 DC OP3 P sing N N 70 DC OP3 HOP3 sing N N 71 DC P OP1 doub N N 72 DC P OP2 sing N N 73 DC P "O5'" sing N N 74 DC OP2 HOP2 sing N N 75 DC "O5'" "C5'" sing N N 76 DC "C5'" "C4'" sing N N 77 DC "C5'" "H5'" sing N N 78 DC "C5'" "H5''" sing N N 79 DC "C4'" "O4'" sing N N 80 DC "C4'" "C3'" sing N N 81 DC "C4'" "H4'" sing N N 82 DC "O4'" "C1'" sing N N 83 DC "C3'" "O3'" sing N N 84 DC "C3'" "C2'" sing N N 85 DC "C3'" "H3'" sing N N 86 DC "O3'" "HO3'" sing N N 87 DC "C2'" "C1'" sing N N 88 DC "C2'" "H2'" sing N N 89 DC "C2'" "H2''" sing N N 90 DC "C1'" N1 sing N N 91 DC "C1'" "H1'" sing N N 92 DC N1 C2 sing N N 93 DC N1 C6 sing N N 94 DC C2 O2 doub N N 95 DC C2 N3 sing N N 96 DC N3 C4 doub N N 97 DC C4 N4 sing N N 98 DC C4 C5 sing N N 99 DC N4 H41 sing N N 100 DC N4 H42 sing N N 101 DC C5 C6 doub N N 102 DC C5 H5 sing N N 103 DC C6 H6 sing N N 104 DG OP3 P sing N N 105 DG OP3 HOP3 sing N N 106 DG P OP1 doub N N 107 DG P OP2 sing N N 108 DG P "O5'" sing N N 109 DG OP2 HOP2 sing N N 110 DG "O5'" "C5'" sing N N 111 DG "C5'" "C4'" sing N N 112 DG "C5'" "H5'" sing N N 113 DG "C5'" "H5''" sing N N 114 DG "C4'" "O4'" sing N N 115 DG "C4'" "C3'" sing N N 116 DG "C4'" "H4'" sing N N 117 DG "O4'" "C1'" sing N N 118 DG "C3'" "O3'" sing N N 119 DG "C3'" "C2'" sing N N 120 DG "C3'" "H3'" sing N N 121 DG "O3'" "HO3'" sing N N 122 DG "C2'" "C1'" sing N N 123 DG "C2'" "H2'" sing N N 124 DG "C2'" "H2''" sing N N 125 DG "C1'" N9 sing N N 126 DG "C1'" "H1'" sing N N 127 DG N9 C8 sing Y N 128 DG N9 C4 sing Y N 129 DG C8 N7 doub Y N 130 DG C8 H8 sing N N 131 DG N7 C5 sing Y N 132 DG C5 C6 sing N N 133 DG C5 C4 doub Y N 134 DG C6 O6 doub N N 135 DG C6 N1 sing N N 136 DG N1 C2 sing N N 137 DG N1 H1 sing N N 138 DG C2 N2 sing N N 139 DG C2 N3 doub N N 140 DG N2 H21 sing N N 141 DG N2 H22 sing N N 142 DG N3 C4 sing N N 143 DT OP3 P sing N N 144 DT OP3 HOP3 sing N N 145 DT P OP1 doub N N 146 DT P OP2 sing N N 147 DT P "O5'" sing N N 148 DT OP2 HOP2 sing N N 149 DT "O5'" "C5'" sing N N 150 DT "C5'" "C4'" sing N N 151 DT "C5'" "H5'" sing N N 152 DT "C5'" "H5''" sing N N 153 DT "C4'" "O4'" sing N N 154 DT "C4'" "C3'" sing N N 155 DT "C4'" "H4'" sing N N 156 DT "O4'" "C1'" sing N N 157 DT "C3'" "O3'" sing N N 158 DT "C3'" "C2'" sing N N 159 DT "C3'" "H3'" sing N N 160 DT "O3'" "HO3'" sing N N 161 DT "C2'" "C1'" sing N N 162 DT "C2'" "H2'" sing N N 163 DT "C2'" "H2''" sing N N 164 DT "C1'" N1 sing N N 165 DT "C1'" "H1'" sing N N 166 DT N1 C2 sing N N 167 DT N1 C6 sing N N 168 DT C2 O2 doub N N 169 DT C2 N3 sing N N 170 DT N3 C4 sing N N 171 DT N3 H3 sing N N 172 DT C4 O4 doub N N 173 DT C4 C5 sing N N 174 DT C5 C7 sing N N 175 DT C5 C6 doub N N 176 DT C7 H71 sing N N 177 DT C7 H72 sing N N 178 DT C7 H73 sing N N 179 DT C6 H6 sing N N 180 GLN N CA sing N N 181 GLN N H sing N N 182 GLN N H2 sing N N 183 GLN CA C sing N N 184 GLN CA CB sing N N 185 GLN CA HA sing N N 186 GLN C O doub N N 187 GLN C OXT sing N N 188 GLN CB CG sing N N 189 GLN CB HB2 sing N N 190 GLN CB HB3 sing N N 191 GLN CG CD sing N N 192 GLN CG HG2 sing N N 193 GLN CG HG3 sing N N 194 GLN CD OE1 doub N N 195 GLN CD NE2 sing N N 196 GLN NE2 HE21 sing N N 197 GLN NE2 HE22 sing N N 198 GLN OXT HXT sing N N 199 GLU N CA sing N N 200 GLU N H sing N N 201 GLU N H2 sing N N 202 GLU CA C sing N N 203 GLU CA CB sing N N 204 GLU CA HA sing N N 205 GLU C O doub N N 206 GLU C OXT sing N N 207 GLU CB CG sing N N 208 GLU CB HB2 sing N N 209 GLU CB HB3 sing N N 210 GLU CG CD sing N N 211 GLU CG HG2 sing N N 212 GLU CG HG3 sing N N 213 GLU CD OE1 doub N N 214 GLU CD OE2 sing N N 215 GLU OE2 HE2 sing N N 216 GLU OXT HXT sing N N 217 GLY N CA sing N N 218 GLY N H sing N N 219 GLY N H2 sing N N 220 GLY CA C sing N N 221 GLY CA HA2 sing N N 222 GLY CA HA3 sing N N 223 GLY C O doub N N 224 GLY C OXT sing N N 225 GLY OXT HXT sing N N 226 HIS N CA sing N N 227 HIS N H sing N N 228 HIS N H2 sing N N 229 HIS CA C sing N N 230 HIS CA CB sing N N 231 HIS CA HA sing N N 232 HIS C O doub N N 233 HIS C OXT sing N N 234 HIS CB CG sing N N 235 HIS CB HB2 sing N N 236 HIS CB HB3 sing N N 237 HIS CG ND1 sing Y N 238 HIS CG CD2 doub Y N 239 HIS ND1 CE1 doub Y N 240 HIS ND1 HD1 sing N N 241 HIS CD2 NE2 sing Y N 242 HIS CD2 HD2 sing N N 243 HIS CE1 NE2 sing Y N 244 HIS CE1 HE1 sing N N 245 HIS NE2 HE2 sing N N 246 HIS OXT HXT sing N N 247 HOH O H1 sing N N 248 HOH O H2 sing N N 249 ILE N CA sing N N 250 ILE N H sing N N 251 ILE N H2 sing N N 252 ILE CA C sing N N 253 ILE CA CB sing N N 254 ILE CA HA sing N N 255 ILE C O doub N N 256 ILE C OXT sing N N 257 ILE CB CG1 sing N N 258 ILE CB CG2 sing N N 259 ILE CB HB sing N N 260 ILE CG1 CD1 sing N N 261 ILE CG1 HG12 sing N N 262 ILE CG1 HG13 sing N N 263 ILE CG2 HG21 sing N N 264 ILE CG2 HG22 sing N N 265 ILE CG2 HG23 sing N N 266 ILE CD1 HD11 sing N N 267 ILE CD1 HD12 sing N N 268 ILE CD1 HD13 sing N N 269 ILE OXT HXT sing N N 270 LEU N CA sing N N 271 LEU N H sing N N 272 LEU N H2 sing N N 273 LEU CA C sing N N 274 LEU CA CB sing N N 275 LEU CA HA sing N N 276 LEU C O doub N N 277 LEU C OXT sing N N 278 LEU CB CG sing N N 279 LEU CB HB2 sing N N 280 LEU CB HB3 sing N N 281 LEU CG CD1 sing N N 282 LEU CG CD2 sing N N 283 LEU CG HG sing N N 284 LEU CD1 HD11 sing N N 285 LEU CD1 HD12 sing N N 286 LEU CD1 HD13 sing N N 287 LEU CD2 HD21 sing N N 288 LEU CD2 HD22 sing N N 289 LEU CD2 HD23 sing N N 290 LEU OXT HXT sing N N 291 LYS N CA sing N N 292 LYS N H sing N N 293 LYS N H2 sing N N 294 LYS CA C sing N N 295 LYS CA CB sing N N 296 LYS CA HA sing N N 297 LYS C O doub N N 298 LYS C OXT sing N N 299 LYS CB CG sing N N 300 LYS CB HB2 sing N N 301 LYS CB HB3 sing N N 302 LYS CG CD sing N N 303 LYS CG HG2 sing N N 304 LYS CG HG3 sing N N 305 LYS CD CE sing N N 306 LYS CD HD2 sing N N 307 LYS CD HD3 sing N N 308 LYS CE NZ sing N N 309 LYS CE HE2 sing N N 310 LYS CE HE3 sing N N 311 LYS NZ HZ1 sing N N 312 LYS NZ HZ2 sing N N 313 LYS NZ HZ3 sing N N 314 LYS OXT HXT sing N N 315 MET N CA sing N N 316 MET N H sing N N 317 MET N H2 sing N N 318 MET CA C sing N N 319 MET CA CB sing N N 320 MET CA HA sing N N 321 MET C O doub N N 322 MET C OXT sing N N 323 MET CB CG sing N N 324 MET CB HB2 sing N N 325 MET CB HB3 sing N N 326 MET CG SD sing N N 327 MET CG HG2 sing N N 328 MET CG HG3 sing N N 329 MET SD CE sing N N 330 MET CE HE1 sing N N 331 MET CE HE2 sing N N 332 MET CE HE3 sing N N 333 MET OXT HXT sing N N 334 PHE N CA sing N N 335 PHE N H sing N N 336 PHE N H2 sing N N 337 PHE CA C sing N N 338 PHE CA CB sing N N 339 PHE CA HA sing N N 340 PHE C O doub N N 341 PHE C OXT sing N N 342 PHE CB CG sing N N 343 PHE CB HB2 sing N N 344 PHE CB HB3 sing N N 345 PHE CG CD1 doub Y N 346 PHE CG CD2 sing Y N 347 PHE CD1 CE1 sing Y N 348 PHE CD1 HD1 sing N N 349 PHE CD2 CE2 doub Y N 350 PHE CD2 HD2 sing N N 351 PHE CE1 CZ doub Y N 352 PHE CE1 HE1 sing N N 353 PHE CE2 CZ sing Y N 354 PHE CE2 HE2 sing N N 355 PHE CZ HZ sing N N 356 PHE OXT HXT sing N N 357 PRO N CA sing N N 358 PRO N CD sing N N 359 PRO N H sing N N 360 PRO CA C sing N N 361 PRO CA CB sing N N 362 PRO CA HA sing N N 363 PRO C O doub N N 364 PRO C OXT sing N N 365 PRO CB CG sing N N 366 PRO CB HB2 sing N N 367 PRO CB HB3 sing N N 368 PRO CG CD sing N N 369 PRO CG HG2 sing N N 370 PRO CG HG3 sing N N 371 PRO CD HD2 sing N N 372 PRO CD HD3 sing N N 373 PRO OXT HXT sing N N 374 SER N CA sing N N 375 SER N H sing N N 376 SER N H2 sing N N 377 SER CA C sing N N 378 SER CA CB sing N N 379 SER CA HA sing N N 380 SER C O doub N N 381 SER C OXT sing N N 382 SER CB OG sing N N 383 SER CB HB2 sing N N 384 SER CB HB3 sing N N 385 SER OG HG sing N N 386 SER OXT HXT sing N N 387 THR N CA sing N N 388 THR N H sing N N 389 THR N H2 sing N N 390 THR CA C sing N N 391 THR CA CB sing N N 392 THR CA HA sing N N 393 THR C O doub N N 394 THR C OXT sing N N 395 THR CB OG1 sing N N 396 THR CB CG2 sing N N 397 THR CB HB sing N N 398 THR OG1 HG1 sing N N 399 THR CG2 HG21 sing N N 400 THR CG2 HG22 sing N N 401 THR CG2 HG23 sing N N 402 THR OXT HXT sing N N 403 TRP N CA sing N N 404 TRP N H sing N N 405 TRP N H2 sing N N 406 TRP CA C sing N N 407 TRP CA CB sing N N 408 TRP CA HA sing N N 409 TRP C O doub N N 410 TRP C OXT sing N N 411 TRP CB CG sing N N 412 TRP CB HB2 sing N N 413 TRP CB HB3 sing N N 414 TRP CG CD1 doub Y N 415 TRP CG CD2 sing Y N 416 TRP CD1 NE1 sing Y N 417 TRP CD1 HD1 sing N N 418 TRP CD2 CE2 doub Y N 419 TRP CD2 CE3 sing Y N 420 TRP NE1 CE2 sing Y N 421 TRP NE1 HE1 sing N N 422 TRP CE2 CZ2 sing Y N 423 TRP CE3 CZ3 doub Y N 424 TRP CE3 HE3 sing N N 425 TRP CZ2 CH2 doub Y N 426 TRP CZ2 HZ2 sing N N 427 TRP CZ3 CH2 sing Y N 428 TRP CZ3 HZ3 sing N N 429 TRP CH2 HH2 sing N N 430 TRP OXT HXT sing N N 431 TYR N CA sing N N 432 TYR N H sing N N 433 TYR N H2 sing N N 434 TYR CA C sing N N 435 TYR CA CB sing N N 436 TYR CA HA sing N N 437 TYR C O doub N N 438 TYR C OXT sing N N 439 TYR CB CG sing N N 440 TYR CB HB2 sing N N 441 TYR CB HB3 sing N N 442 TYR CG CD1 doub Y N 443 TYR CG CD2 sing Y N 444 TYR CD1 CE1 sing Y N 445 TYR CD1 HD1 sing N N 446 TYR CD2 CE2 doub Y N 447 TYR CD2 HD2 sing N N 448 TYR CE1 CZ doub Y N 449 TYR CE1 HE1 sing N N 450 TYR CE2 CZ sing Y N 451 TYR CE2 HE2 sing N N 452 TYR CZ OH sing N N 453 TYR OH HH sing N N 454 TYR OXT HXT sing N N 455 VAL N CA sing N N 456 VAL N H sing N N 457 VAL N H2 sing N N 458 VAL CA C sing N N 459 VAL CA CB sing N N 460 VAL CA HA sing N N 461 VAL C O doub N N 462 VAL C OXT sing N N 463 VAL CB CG1 sing N N 464 VAL CB CG2 sing N N 465 VAL CB HB sing N N 466 VAL CG1 HG11 sing N N 467 VAL CG1 HG12 sing N N 468 VAL CG1 HG13 sing N N 469 VAL CG2 HG21 sing N N 470 VAL CG2 HG22 sing N N 471 VAL CG2 HG23 sing N N 472 VAL OXT HXT sing N N 473 # _ndb_struct_conf_na.entry_id 3EYI _ndb_struct_conf_na.feature 'z-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 C DC 2 1_555 D DG 7 1_555 -0.221 -0.118 -0.096 -2.551 1.411 2.984 1 C_DC1:DG6_D C 1 ? D 6 ? 19 1 1 C DG 3 1_555 D DC 6 1_555 0.280 -0.120 -0.070 -3.045 4.318 2.804 2 C_DG2:DC5_D C 2 ? D 5 ? 19 1 1 C DC 4 1_555 D DG 5 1_555 -0.383 -0.102 0.037 9.780 -4.098 -0.617 3 C_DC3:DG4_D C 3 ? D 4 ? 19 1 1 C DG 5 1_555 D DC 4 1_555 0.367 -0.120 0.200 -9.782 -3.787 0.030 4 C_DG4:DC3_D C 4 ? D 3 ? 19 1 1 C DC 6 1_555 D DG 3 1_555 -0.377 -0.154 0.181 3.940 3.591 2.611 5 C_DC5:DG2_D C 5 ? D 2 ? 19 1 1 C DG 7 1_555 D DC 2 1_555 0.181 -0.108 0.278 -8.947 8.101 3.303 6 C_DG6:DC1_D C 6 ? D 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 C DC 2 1_555 D DG 7 1_555 C DG 3 1_555 D DC 6 1_555 0.263 5.384 3.431 -0.129 -2.204 -6.986 -32.110 1.472 4.895 17.520 -1.022 -7.326 1 CC_DC1DG2:DC5DG6_DD C 1 ? D 6 ? C 2 ? D 5 ? 1 C DG 3 1_555 D DC 6 1_555 C DC 4 1_555 D DG 5 1_555 -0.775 -1.068 3.072 -1.317 -4.438 -49.111 1.585 -1.020 2.950 5.326 -1.580 -49.315 2 CC_DG2DC3:DG4DC5_DD C 2 ? D 5 ? C 3 ? D 4 ? 1 C DC 4 1_555 D DG 5 1_555 C DG 5 1_555 D DC 4 1_555 0.003 5.584 3.976 -0.811 -2.223 -6.811 -32.504 -4.324 5.476 18.011 -6.573 -7.210 3 CC_DC3DG4:DC3DG4_DD C 3 ? D 4 ? C 4 ? D 3 ? 1 C DG 5 1_555 D DC 4 1_555 C DC 6 1_555 D DG 3 1_555 0.593 -0.508 3.149 1.154 -1.001 -52.263 0.640 0.746 3.127 1.136 1.309 -52.284 4 CC_DG4DC5:DG2DC3_DD C 4 ? D 3 ? C 5 ? D 2 ? 1 C DC 6 1_555 D DG 3 1_555 C DG 7 1_555 D DC 2 1_555 -0.032 5.951 4.009 -2.380 5.858 -9.895 -34.938 -2.529 0.412 -30.236 -12.284 -11.738 5 CC_DC5DG6:DC1DG2_DD C 5 ? D 2 ? C 6 ? D 1 ? # _atom_sites.entry_id 3EYI _atom_sites.fract_transf_matrix[1][1] 0.033864 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017168 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011286 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_