HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 21-OCT-08 3EYT TITLE CRYSTAL STRUCTURE OF THIOREDOXIN-LIKE SUPERFAMILY PROTEIN SPOA0173 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN SPOA0173; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SILICIBACTER POMEROYI; SOURCE 3 ORGANISM_TAXID: 89184; SOURCE 4 GENE: SPOA0173; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) DERIVATIVES; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMCSG19 KEYWDS THIOREDOXIN-LIKE SUPERFAMILY PROTEIN SPOA0173, SILICIBACTER POMEROYI KEYWDS 2 DSS, STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, KEYWDS 3 MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR C.CHANG,N.MARSHALL,L.FREEMAN,A.JOACHIMIAK,MIDWEST CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS (MCSG) REVDAT 4 27-DEC-23 3EYT 1 REMARK LINK REVDAT 3 13-JUL-11 3EYT 1 VERSN REVDAT 2 24-FEB-09 3EYT 1 VERSN REVDAT 1 04-NOV-08 3EYT 0 JRNL AUTH C.CHANG,N.MARSHALL,L.FREEMAN,A.JOACHIMIAK JRNL TITL CRYSTAL STRUCTURE OF THIOREDOXIN-LIKE SUPERFAMILY PROTEIN JRNL TITL 2 SPOA0173 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0054 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 68.52 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 50932 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2585 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3438 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.2260 REMARK 3 BIN FREE R VALUE SET COUNT : 181 REMARK 3 BIN FREE R VALUE : 0.2350 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4735 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 519 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 24.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.26000 REMARK 3 B22 (A**2) : 0.31000 REMARK 3 B33 (A**2) : -1.57000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.154 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.140 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.088 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.785 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4980 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6762 ; 1.417 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 642 ; 5.547 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 206 ;33.663 ;24.078 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 831 ;13.321 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;17.526 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 763 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3783 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3178 ; 0.749 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5091 ; 1.356 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1802 ; 2.693 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1671 ; 4.308 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 153 REMARK 3 ORIGIN FOR THE GROUP (A): 44.5806 13.2686 19.1719 REMARK 3 T TENSOR REMARK 3 T11: 0.0267 T22: 0.0346 REMARK 3 T33: 0.0135 T12: 0.0238 REMARK 3 T13: 0.0128 T23: 0.0183 REMARK 3 L TENSOR REMARK 3 L11: 0.5929 L22: 1.3967 REMARK 3 L33: 2.0713 L12: -0.1434 REMARK 3 L13: -0.1254 L23: 0.6863 REMARK 3 S TENSOR REMARK 3 S11: -0.0106 S12: -0.0017 S13: -0.0431 REMARK 3 S21: 0.1123 S22: 0.0554 S23: 0.0513 REMARK 3 S31: -0.1181 S32: -0.1434 S33: -0.0448 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 153 REMARK 3 ORIGIN FOR THE GROUP (A): 50.8079 -20.5722 19.2768 REMARK 3 T TENSOR REMARK 3 T11: 0.0379 T22: 0.0252 REMARK 3 T33: 0.0275 T12: 0.0019 REMARK 3 T13: -0.0117 T23: 0.0095 REMARK 3 L TENSOR REMARK 3 L11: 0.7719 L22: 2.0731 REMARK 3 L33: 2.7573 L12: -0.3691 REMARK 3 L13: 0.3030 L23: -0.9753 REMARK 3 S TENSOR REMARK 3 S11: 0.0130 S12: -0.0157 S13: -0.0218 REMARK 3 S21: 0.1376 S22: 0.0319 S23: -0.0032 REMARK 3 S31: 0.1636 S32: 0.0899 S33: -0.0449 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 0 C 154 REMARK 3 ORIGIN FOR THE GROUP (A): 51.9881 -14.0956 -13.2653 REMARK 3 T TENSOR REMARK 3 T11: 0.0540 T22: 0.0291 REMARK 3 T33: 0.0434 T12: 0.0136 REMARK 3 T13: -0.0245 T23: -0.0038 REMARK 3 L TENSOR REMARK 3 L11: 0.9518 L22: 1.1044 REMARK 3 L33: 2.2414 L12: -0.2916 REMARK 3 L13: 0.0108 L23: 0.2633 REMARK 3 S TENSOR REMARK 3 S11: 0.0855 S12: -0.0186 S13: 0.0408 REMARK 3 S21: -0.1315 S22: -0.0213 S23: 0.0005 REMARK 3 S31: 0.1847 S32: -0.0099 S33: -0.0642 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 0 D 152 REMARK 3 ORIGIN FOR THE GROUP (A): 41.7763 18.9204 -13.0147 REMARK 3 T TENSOR REMARK 3 T11: 0.0442 T22: 0.0478 REMARK 3 T33: 0.0282 T12: 0.0357 REMARK 3 T13: -0.0084 T23: -0.0267 REMARK 3 L TENSOR REMARK 3 L11: 0.7265 L22: 1.9387 REMARK 3 L33: 1.6821 L12: -0.4003 REMARK 3 L13: -0.1001 L23: -0.5222 REMARK 3 S TENSOR REMARK 3 S11: 0.0124 S12: 0.0028 S13: -0.0562 REMARK 3 S21: -0.0992 S22: 0.0359 S23: -0.0524 REMARK 3 S31: -0.1086 S32: -0.0433 S33: -0.0484 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 4 REMARK 4 3EYT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-OCT-08. REMARK 100 THE DEPOSITION ID IS D_1000049937. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-OCT-08 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97928 REMARK 200 MONOCHROMATOR : SI-111 CHANNEL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51070 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 68.520 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.14200 REMARK 200 R SYM (I) : 0.14200 REMARK 200 FOR THE DATA SET : 20.2560 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 0.89300 REMARK 200 R SYM FOR SHELL (I) : 0.89300 REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000, MLPHARE, SHELXD, DM, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM SULFATE 0.1M SODIUM REMARK 280 ACETATE PH 4.6 12% PEG4000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.77150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.56850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.40000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 68.56850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.77150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.40000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 154 REMARK 465 VAL A 155 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 SER B 154 REMARK 465 VAL B 155 REMARK 465 VAL C 155 REMARK 465 PRO D 153 REMARK 465 SER D 154 REMARK 465 VAL D 155 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A -2 OG REMARK 470 MSE A 1 CG SE CE REMARK 470 SER C -2 OG REMARK 470 SER C 154 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 366 O HOH A 450 2.12 REMARK 500 NE2 GLN C 9 O HOH C 257 2.13 REMARK 500 O HOH A 231 O HOH A 450 2.16 REMARK 500 OD1 ASP C 17 O HOH C 295 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG D 113 O HOH A 382 4455 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY D 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC61742.1 RELATED DB: TARGETDB DBREF 3EYT A 1 155 UNP Q5LL54 Q5LL54_SILPO 1 155 DBREF 3EYT B 1 155 UNP Q5LL54 Q5LL54_SILPO 1 155 DBREF 3EYT C 1 155 UNP Q5LL54 Q5LL54_SILPO 1 155 DBREF 3EYT D 1 155 UNP Q5LL54 Q5LL54_SILPO 1 155 SEQADV 3EYT SER A -2 UNP Q5LL54 EXPRESSION TAG SEQADV 3EYT ASN A -1 UNP Q5LL54 EXPRESSION TAG SEQADV 3EYT ALA A 0 UNP Q5LL54 EXPRESSION TAG SEQADV 3EYT SER B -2 UNP Q5LL54 EXPRESSION TAG SEQADV 3EYT ASN B -1 UNP Q5LL54 EXPRESSION TAG SEQADV 3EYT ALA B 0 UNP Q5LL54 EXPRESSION TAG SEQADV 3EYT SER C -2 UNP Q5LL54 EXPRESSION TAG SEQADV 3EYT ASN C -1 UNP Q5LL54 EXPRESSION TAG SEQADV 3EYT ALA C 0 UNP Q5LL54 EXPRESSION TAG SEQADV 3EYT SER D -2 UNP Q5LL54 EXPRESSION TAG SEQADV 3EYT ASN D -1 UNP Q5LL54 EXPRESSION TAG SEQADV 3EYT ALA D 0 UNP Q5LL54 EXPRESSION TAG SEQRES 1 A 158 SER ASN ALA MSE LYS ALA PRO GLU LEU GLN ILE GLN GLN SEQRES 2 A 158 TRP PHE ASN SER ALA THR ASP LEU THR LEU ALA ASP LEU SEQRES 3 A 158 ARG GLY LYS VAL ILE VAL ILE GLU ALA PHE GLN MSE LEU SEQRES 4 A 158 CYS PRO GLY CYS VAL MSE HIS GLY ILE PRO LEU ALA GLN SEQRES 5 A 158 LYS VAL ARG ALA ALA PHE PRO GLU ASP LYS VAL ALA VAL SEQRES 6 A 158 LEU GLY LEU HIS THR VAL PHE GLU HIS HIS GLU ALA MSE SEQRES 7 A 158 THR PRO ILE SER LEU LYS ALA PHE LEU HIS GLU TYR ARG SEQRES 8 A 158 ILE LYS PHE PRO VAL GLY VAL ASP GLN PRO GLY ASP GLY SEQRES 9 A 158 ALA MSE PRO ARG THR MSE ALA ALA TYR GLN MSE ARG GLY SEQRES 10 A 158 THR PRO SER LEU LEU LEU ILE ASP LYS ALA GLY ASP LEU SEQRES 11 A 158 ARG ALA HIS HIS PHE GLY ASP VAL SER GLU LEU LEU LEU SEQRES 12 A 158 GLY ALA GLU ILE ALA THR LEU LEU GLY GLU ALA ALA PRO SEQRES 13 A 158 SER VAL SEQRES 1 B 158 SER ASN ALA MSE LYS ALA PRO GLU LEU GLN ILE GLN GLN SEQRES 2 B 158 TRP PHE ASN SER ALA THR ASP LEU THR LEU ALA ASP LEU SEQRES 3 B 158 ARG GLY LYS VAL ILE VAL ILE GLU ALA PHE GLN MSE LEU SEQRES 4 B 158 CYS PRO GLY CYS VAL MSE HIS GLY ILE PRO LEU ALA GLN SEQRES 5 B 158 LYS VAL ARG ALA ALA PHE PRO GLU ASP LYS VAL ALA VAL SEQRES 6 B 158 LEU GLY LEU HIS THR VAL PHE GLU HIS HIS GLU ALA MSE SEQRES 7 B 158 THR PRO ILE SER LEU LYS ALA PHE LEU HIS GLU TYR ARG SEQRES 8 B 158 ILE LYS PHE PRO VAL GLY VAL ASP GLN PRO GLY ASP GLY SEQRES 9 B 158 ALA MSE PRO ARG THR MSE ALA ALA TYR GLN MSE ARG GLY SEQRES 10 B 158 THR PRO SER LEU LEU LEU ILE ASP LYS ALA GLY ASP LEU SEQRES 11 B 158 ARG ALA HIS HIS PHE GLY ASP VAL SER GLU LEU LEU LEU SEQRES 12 B 158 GLY ALA GLU ILE ALA THR LEU LEU GLY GLU ALA ALA PRO SEQRES 13 B 158 SER VAL SEQRES 1 C 158 SER ASN ALA MSE LYS ALA PRO GLU LEU GLN ILE GLN GLN SEQRES 2 C 158 TRP PHE ASN SER ALA THR ASP LEU THR LEU ALA ASP LEU SEQRES 3 C 158 ARG GLY LYS VAL ILE VAL ILE GLU ALA PHE GLN MSE LEU SEQRES 4 C 158 CYS PRO GLY CYS VAL MSE HIS GLY ILE PRO LEU ALA GLN SEQRES 5 C 158 LYS VAL ARG ALA ALA PHE PRO GLU ASP LYS VAL ALA VAL SEQRES 6 C 158 LEU GLY LEU HIS THR VAL PHE GLU HIS HIS GLU ALA MSE SEQRES 7 C 158 THR PRO ILE SER LEU LYS ALA PHE LEU HIS GLU TYR ARG SEQRES 8 C 158 ILE LYS PHE PRO VAL GLY VAL ASP GLN PRO GLY ASP GLY SEQRES 9 C 158 ALA MSE PRO ARG THR MSE ALA ALA TYR GLN MSE ARG GLY SEQRES 10 C 158 THR PRO SER LEU LEU LEU ILE ASP LYS ALA GLY ASP LEU SEQRES 11 C 158 ARG ALA HIS HIS PHE GLY ASP VAL SER GLU LEU LEU LEU SEQRES 12 C 158 GLY ALA GLU ILE ALA THR LEU LEU GLY GLU ALA ALA PRO SEQRES 13 C 158 SER VAL SEQRES 1 D 158 SER ASN ALA MSE LYS ALA PRO GLU LEU GLN ILE GLN GLN SEQRES 2 D 158 TRP PHE ASN SER ALA THR ASP LEU THR LEU ALA ASP LEU SEQRES 3 D 158 ARG GLY LYS VAL ILE VAL ILE GLU ALA PHE GLN MSE LEU SEQRES 4 D 158 CYS PRO GLY CYS VAL MSE HIS GLY ILE PRO LEU ALA GLN SEQRES 5 D 158 LYS VAL ARG ALA ALA PHE PRO GLU ASP LYS VAL ALA VAL SEQRES 6 D 158 LEU GLY LEU HIS THR VAL PHE GLU HIS HIS GLU ALA MSE SEQRES 7 D 158 THR PRO ILE SER LEU LYS ALA PHE LEU HIS GLU TYR ARG SEQRES 8 D 158 ILE LYS PHE PRO VAL GLY VAL ASP GLN PRO GLY ASP GLY SEQRES 9 D 158 ALA MSE PRO ARG THR MSE ALA ALA TYR GLN MSE ARG GLY SEQRES 10 D 158 THR PRO SER LEU LEU LEU ILE ASP LYS ALA GLY ASP LEU SEQRES 11 D 158 ARG ALA HIS HIS PHE GLY ASP VAL SER GLU LEU LEU LEU SEQRES 12 D 158 GLY ALA GLU ILE ALA THR LEU LEU GLY GLU ALA ALA PRO SEQRES 13 D 158 SER VAL MODRES 3EYT MSE A 1 MET SELENOMETHIONINE MODRES 3EYT MSE A 35 MET SELENOMETHIONINE MODRES 3EYT MSE A 42 MET SELENOMETHIONINE MODRES 3EYT MSE A 75 MET SELENOMETHIONINE MODRES 3EYT MSE A 103 MET SELENOMETHIONINE MODRES 3EYT MSE A 107 MET SELENOMETHIONINE MODRES 3EYT MSE A 112 MET SELENOMETHIONINE MODRES 3EYT MSE B 1 MET SELENOMETHIONINE MODRES 3EYT MSE B 35 MET SELENOMETHIONINE MODRES 3EYT MSE B 42 MET SELENOMETHIONINE MODRES 3EYT MSE B 75 MET SELENOMETHIONINE MODRES 3EYT MSE B 103 MET SELENOMETHIONINE MODRES 3EYT MSE B 107 MET SELENOMETHIONINE MODRES 3EYT MSE B 112 MET SELENOMETHIONINE MODRES 3EYT MSE C 1 MET SELENOMETHIONINE MODRES 3EYT MSE C 35 MET SELENOMETHIONINE MODRES 3EYT MSE C 42 MET SELENOMETHIONINE MODRES 3EYT MSE C 75 MET SELENOMETHIONINE MODRES 3EYT MSE C 103 MET SELENOMETHIONINE MODRES 3EYT MSE C 107 MET SELENOMETHIONINE MODRES 3EYT MSE C 112 MET SELENOMETHIONINE MODRES 3EYT MSE D 1 MET SELENOMETHIONINE MODRES 3EYT MSE D 35 MET SELENOMETHIONINE MODRES 3EYT MSE D 42 MET SELENOMETHIONINE MODRES 3EYT MSE D 75 MET SELENOMETHIONINE MODRES 3EYT MSE D 103 MET SELENOMETHIONINE MODRES 3EYT MSE D 107 MET SELENOMETHIONINE MODRES 3EYT MSE D 112 MET SELENOMETHIONINE HET MSE A 1 5 HET MSE A 35 8 HET MSE A 42 8 HET MSE A 75 8 HET MSE A 103 8 HET MSE A 107 8 HET MSE A 112 8 HET MSE B 1 8 HET MSE B 35 8 HET MSE B 42 8 HET MSE B 75 8 HET MSE B 103 8 HET MSE B 107 8 HET MSE B 112 8 HET MSE C 1 8 HET MSE C 35 8 HET MSE C 42 8 HET MSE C 75 8 HET MSE C 103 8 HET MSE C 107 8 HET MSE C 112 8 HET MSE D 1 8 HET MSE D 35 8 HET MSE D 42 8 HET MSE D 75 8 HET MSE D 103 8 HET MSE D 107 8 HET MSE D 112 8 HET EDO A 201 4 HET EDO A 203 4 HET ACY A 202 4 HET ACY B 201 4 HET EDO C 201 4 HET ACY D 201 4 HETNAM MSE SELENOMETHIONINE HETNAM EDO 1,2-ETHANEDIOL HETNAM ACY ACETIC ACID HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 28(C5 H11 N O2 SE) FORMUL 5 EDO 3(C2 H6 O2) FORMUL 7 ACY 3(C2 H4 O2) FORMUL 11 HOH *519(H2 O) HELIX 1 1 LEU A 20 ARG A 24 5 5 HELIX 2 2 CYS A 37 HIS A 43 1 7 HELIX 3 3 HIS A 43 PHE A 55 1 13 HELIX 4 4 HIS A 71 MSE A 75 5 5 HELIX 5 5 THR A 76 TYR A 87 1 12 HELIX 6 6 PRO A 104 TYR A 110 1 7 HELIX 7 7 SER A 136 GLY A 149 1 14 HELIX 8 8 LEU B 20 ARG B 24 5 5 HELIX 9 9 CYS B 37 HIS B 43 1 7 HELIX 10 10 HIS B 43 PHE B 55 1 13 HELIX 11 11 HIS B 71 MSE B 75 5 5 HELIX 12 12 THR B 76 TYR B 87 1 12 HELIX 13 13 PRO B 104 GLN B 111 1 8 HELIX 14 14 SER B 136 GLY B 149 1 14 HELIX 15 15 LEU C 20 ARG C 24 5 5 HELIX 16 16 CYS C 37 HIS C 43 1 7 HELIX 17 17 HIS C 43 PHE C 55 1 13 HELIX 18 18 HIS C 71 MSE C 75 5 5 HELIX 19 19 THR C 76 TYR C 87 1 12 HELIX 20 20 PRO C 104 TYR C 110 1 7 HELIX 21 21 SER C 136 GLY C 149 1 14 HELIX 22 22 LEU D 20 ARG D 24 5 5 HELIX 23 23 CYS D 37 HIS D 43 1 7 HELIX 24 24 HIS D 43 PHE D 55 1 13 HELIX 25 25 HIS D 71 MSE D 75 5 5 HELIX 26 26 THR D 76 TYR D 87 1 12 HELIX 27 27 PRO D 104 TYR D 110 1 7 HELIX 28 28 SER D 136 GLY D 149 1 14 SHEET 1 A 7 MSE A 1 LYS A 2 0 SHEET 2 A 7 ASP A 126 PHE A 132 -1 O LEU A 127 N MSE A 1 SHEET 3 A 7 SER A 117 ILE A 121 -1 N LEU A 120 O ARG A 128 SHEET 4 A 7 VAL A 27 PHE A 33 -1 N ALA A 32 O SER A 117 SHEET 5 A 7 VAL A 60 HIS A 66 1 O ALA A 61 N VAL A 29 SHEET 6 A 7 VAL A 93 ASP A 96 1 O GLY A 94 N HIS A 66 SHEET 7 A 7 ILE A 8 PHE A 12 -1 N GLN A 9 O VAL A 95 SHEET 1 B 6 ILE B 8 PHE B 12 0 SHEET 2 B 6 VAL B 93 ASP B 96 -1 O VAL B 93 N PHE B 12 SHEET 3 B 6 VAL B 60 HIS B 66 1 N GLY B 64 O GLY B 94 SHEET 4 B 6 VAL B 27 PHE B 33 1 N VAL B 29 O ALA B 61 SHEET 5 B 6 SER B 117 ILE B 121 -1 O SER B 117 N ALA B 32 SHEET 6 B 6 LEU B 127 PHE B 132 -1 O HIS B 131 N LEU B 118 SHEET 1 C 7 MSE C 1 LYS C 2 0 SHEET 2 C 7 ASP C 126 PHE C 132 -1 O LEU C 127 N MSE C 1 SHEET 3 C 7 SER C 117 ILE C 121 -1 N LEU C 120 O ARG C 128 SHEET 4 C 7 VAL C 27 PHE C 33 -1 N ALA C 32 O SER C 117 SHEET 5 C 7 VAL C 60 HIS C 66 1 O ALA C 61 N VAL C 29 SHEET 6 C 7 VAL C 93 ASP C 96 1 O GLY C 94 N HIS C 66 SHEET 7 C 7 ILE C 8 PHE C 12 -1 N GLN C 9 O VAL C 95 SHEET 1 D 6 ILE D 8 PHE D 12 0 SHEET 2 D 6 VAL D 93 ASP D 96 -1 O VAL D 93 N PHE D 12 SHEET 3 D 6 VAL D 60 HIS D 66 1 N GLY D 64 O GLY D 94 SHEET 4 D 6 VAL D 27 PHE D 33 1 N VAL D 29 O ALA D 61 SHEET 5 D 6 SER D 117 ILE D 121 -1 O SER D 117 N ALA D 32 SHEET 6 D 6 LEU D 127 PHE D 132 -1 O ARG D 128 N LEU D 120 LINK C ALA A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N LYS A 2 1555 1555 1.33 LINK C GLN A 34 N MSE A 35 1555 1555 1.33 LINK C MSE A 35 N LEU A 36 1555 1555 1.33 LINK C VAL A 41 N MSE A 42 1555 1555 1.33 LINK C MSE A 42 N HIS A 43 1555 1555 1.33 LINK C ALA A 74 N MSE A 75 1555 1555 1.34 LINK C MSE A 75 N THR A 76 1555 1555 1.34 LINK C ALA A 102 N MSE A 103 1555 1555 1.33 LINK C MSE A 103 N PRO A 104 1555 1555 1.34 LINK C THR A 106 N MSE A 107 1555 1555 1.33 LINK C MSE A 107 N ALA A 108 1555 1555 1.34 LINK C GLN A 111 N MSE A 112 1555 1555 1.32 LINK C MSE A 112 N ARG A 113 1555 1555 1.33 LINK C ALA B 0 N MSE B 1 1555 1555 1.34 LINK C MSE B 1 N LYS B 2 1555 1555 1.33 LINK C GLN B 34 N MSE B 35 1555 1555 1.33 LINK C MSE B 35 N LEU B 36 1555 1555 1.34 LINK C VAL B 41 N MSE B 42 1555 1555 1.33 LINK C MSE B 42 N HIS B 43 1555 1555 1.34 LINK C ALA B 74 N MSE B 75 1555 1555 1.33 LINK C MSE B 75 N THR B 76 1555 1555 1.33 LINK C ALA B 102 N MSE B 103 1555 1555 1.34 LINK C MSE B 103 N PRO B 104 1555 1555 1.34 LINK C THR B 106 N MSE B 107 1555 1555 1.33 LINK C MSE B 107 N ALA B 108 1555 1555 1.33 LINK C GLN B 111 N MSE B 112 1555 1555 1.33 LINK C MSE B 112 N AARG B 113 1555 1555 1.33 LINK C MSE B 112 N BARG B 113 1555 1555 1.33 LINK C ALA C 0 N MSE C 1 1555 1555 1.33 LINK C MSE C 1 N LYS C 2 1555 1555 1.33 LINK C GLN C 34 N MSE C 35 1555 1555 1.32 LINK C MSE C 35 N LEU C 36 1555 1555 1.33 LINK C VAL C 41 N MSE C 42 1555 1555 1.32 LINK C MSE C 42 N HIS C 43 1555 1555 1.34 LINK C ALA C 74 N MSE C 75 1555 1555 1.35 LINK C MSE C 75 N THR C 76 1555 1555 1.34 LINK C ALA C 102 N MSE C 103 1555 1555 1.34 LINK C MSE C 103 N PRO C 104 1555 1555 1.35 LINK C THR C 106 N MSE C 107 1555 1555 1.33 LINK C MSE C 107 N ALA C 108 1555 1555 1.34 LINK C GLN C 111 N MSE C 112 1555 1555 1.33 LINK C MSE C 112 N ARG C 113 1555 1555 1.32 LINK C ALA D 0 N MSE D 1 1555 1555 1.32 LINK C MSE D 1 N LYS D 2 1555 1555 1.33 LINK C GLN D 34 N MSE D 35 1555 1555 1.33 LINK C MSE D 35 N LEU D 36 1555 1555 1.34 LINK C VAL D 41 N MSE D 42 1555 1555 1.32 LINK C MSE D 42 N HIS D 43 1555 1555 1.33 LINK C ALA D 74 N MSE D 75 1555 1555 1.34 LINK C MSE D 75 N THR D 76 1555 1555 1.33 LINK C ALA D 102 N MSE D 103 1555 1555 1.34 LINK C MSE D 103 N PRO D 104 1555 1555 1.36 LINK C THR D 106 N MSE D 107 1555 1555 1.34 LINK C MSE D 107 N ALA D 108 1555 1555 1.33 LINK C GLN D 111 N MSE D 112 1555 1555 1.32 LINK C MSE D 112 N ARG D 113 1555 1555 1.33 CISPEP 1 THR A 115 PRO A 116 0 -6.05 CISPEP 2 THR B 115 PRO B 116 0 -7.55 CISPEP 3 THR C 115 PRO C 116 0 -3.79 CISPEP 4 THR D 115 PRO D 116 0 -2.56 SITE 1 AC1 5 ILE A 8 ASP A 17 HOH A 337 GLN D 9 SITE 2 AC1 5 GLN D 97 SITE 1 AC2 6 PRO A 98 GLY A 99 ASP A 100 ARG A 105 SITE 2 AC2 6 GLN D 10 TRP D 11 SITE 1 AC3 9 GLN A 49 ARG A 52 ARG A 88 ILE A 89 SITE 2 AC3 9 LYS A 90 PHE A 91 HOH A 319 HOH A 367 SITE 3 AC3 9 HOH A 443 SITE 1 AC4 7 GLN B 49 ARG B 88 ILE B 89 LYS B 90 SITE 2 AC4 7 PHE B 91 HOH B 219 HOH B 311 SITE 1 AC5 4 GLY C 99 ASP C 100 GLY C 101 MSE C 103 SITE 1 AC6 9 GLN D 49 ARG D 52 ARG D 88 ILE D 89 SITE 2 AC6 9 LYS D 90 PHE D 91 HOH D 221 HOH D 278 SITE 3 AC6 9 HOH D 333 CRYST1 65.543 76.800 137.137 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015260 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013020 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007290 0.00000