HEADER TRANSFERASE 22-OCT-08 3EZ1 TITLE CRYSTAL STRUCTURE OF PUTATIVE AMINOTRANSFERASE (MOCR FAMILY) TITLE 2 (YP_604413.1) FROM DEINOCOCCUS GEOTHERMALIS DSM 11300 AT 2.60 A TITLE 3 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMINOTRANSFERASE MOCR FAMILY; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DEINOCOCCUS GEOTHERMALIS DSM 11300; SOURCE 3 ORGANISM_TAXID: 319795; SOURCE 4 GENE: YP_604413.1, DGEO_0943; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS YP_604413.1, PUTATIVE AMINOTRANSFERASE (MOCR FAMILY), STRUCTURAL KEYWDS 2 GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN KEYWDS 3 STRUCTURE INITIATIVE, PSI-2, AMINOTRANSFERASE, TRANSFERASE, UNKNOWN KEYWDS 4 FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 8 15-NOV-23 3EZ1 1 REMARK REVDAT 7 20-SEP-23 3EZ1 1 REMARK REVDAT 6 01-FEB-23 3EZ1 1 REMARK SEQADV REVDAT 5 24-JUL-19 3EZ1 1 REMARK LINK REVDAT 4 25-OCT-17 3EZ1 1 REMARK REVDAT 3 13-JUL-11 3EZ1 1 VERSN REVDAT 2 24-FEB-09 3EZ1 1 VERSN REVDAT 1 18-NOV-08 3EZ1 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE AMINOTRANSFERASE (MOCR FAMILY) JRNL TITL 2 (YP_604413.1) FROM DEINOCOCCUS GEOTHERMALIS DSM 11300 AT JRNL TITL 3 2.60 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 26721 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.226 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1349 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1886 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.85 REMARK 3 BIN R VALUE (WORKING SET) : 0.3170 REMARK 3 BIN FREE R VALUE SET COUNT : 98 REMARK 3 BIN FREE R VALUE : 0.3790 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6344 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 131 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 37.06 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.32000 REMARK 3 B22 (A**2) : -0.53000 REMARK 3 B33 (A**2) : -0.45000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.45000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.355 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.299 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 30.170 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.903 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.855 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6513 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 4374 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8874 ; 1.476 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10613 ; 1.272 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 841 ; 3.242 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 289 ;27.433 ;23.218 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 996 ;10.387 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 56 ; 8.622 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 993 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7422 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1358 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1288 ; 0.131 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 4319 ; 0.118 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3107 ; 0.139 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 3053 ; 0.067 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 185 ; 0.074 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 12 ; 0.074 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 52 ; 0.080 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 3 ; 0.130 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4347 ; 0.272 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1703 ; 0.044 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6646 ; 0.493 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2519 ; 1.006 ; 6.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2225 ; 1.458 ; 8.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 7 A 422 4 REMARK 3 1 B 7 B 422 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 5313 ; 0.160 ; 0.500 REMARK 3 MEDIUM THERMAL 1 A (A**2): 5313 ; 0.140 ; 2.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 422 REMARK 3 ORIGIN FOR THE GROUP (A): 29.0750 60.8980 38.3760 REMARK 3 T TENSOR REMARK 3 T11: -0.0437 T22: -0.2101 REMARK 3 T33: -0.1972 T12: -0.0350 REMARK 3 T13: 0.0877 T23: 0.0101 REMARK 3 L TENSOR REMARK 3 L11: 0.5105 L22: 1.4003 REMARK 3 L33: 1.7189 L12: -0.6948 REMARK 3 L13: -0.4238 L23: 0.9028 REMARK 3 S TENSOR REMARK 3 S11: 0.0348 S12: 0.0697 S13: 0.0385 REMARK 3 S21: -0.2181 S22: 0.0159 S23: -0.1379 REMARK 3 S31: -0.1364 S32: 0.1037 S33: -0.0507 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 4 B 422 REMARK 3 ORIGIN FOR THE GROUP (A): 14.4640 68.6850 73.5750 REMARK 3 T TENSOR REMARK 3 T11: 0.0034 T22: -0.2210 REMARK 3 T33: -0.2057 T12: 0.0413 REMARK 3 T13: 0.0577 T23: 0.0338 REMARK 3 L TENSOR REMARK 3 L11: 0.3156 L22: 1.5061 REMARK 3 L33: 1.3657 L12: -0.2294 REMARK 3 L13: -0.4564 L23: 1.0565 REMARK 3 S TENSOR REMARK 3 S11: -0.1517 S12: -0.0941 S13: -0.0567 REMARK 3 S21: 0.3173 S22: 0.1047 S23: 0.0763 REMARK 3 S31: 0.1926 S32: 0.1302 S33: 0.0470 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. REMARK 3 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY REMARK 3 OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 REMARK 3 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. REMARK 3 4. BASED ON HOMOLOGUS STRUCTURES THAT BIND PLP, SUCH AS 1VP4, A REMARK 3 PHOSPHATE MOLECULE HAS BEEN MODELED IN EACH CHAIN AT THE SITE OF REMARK 3 THE REMARK 3 CORRESPONDING PHOSPHATE MOIETY OF PLP. THERE IS NO ELECTRON REMARK 3 DENSITY REMARK 3 SUPPORT FOR THE REST OF THE PLP MOLECULE. REMARK 4 REMARK 4 3EZ1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-OCT-08. REMARK 100 THE DEPOSITION ID IS D_1000049945. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-AUG-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : FLAT COLLIMATING MIRROR, TOROID REMARK 200 FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.2.5 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26740 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 30.002 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.18600 REMARK 200 R SYM (I) : 0.18600 REMARK 200 FOR THE DATA SET : 6.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.67 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.63000 REMARK 200 R SYM FOR SHELL (I) : 0.63000 REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MR REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3D6K REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2000M MGCL2, 20.0000% PEG-8000, 0.1M REMARK 280 TRIS PH 8.5, NANODROP, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 51.98450 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT CRYSTAL PACKING ANALYSIS SUGGESTS THE REMARK 300 ASSIGNMENT OF A DIMER AS THE SIGNIFICANT OLIGOMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 THR A 2 REMARK 465 LYS A 3 REMARK 465 GLU A 4 REMARK 465 GLY B 0 REMARK 465 MSE B 1 REMARK 465 THR B 2 REMARK 465 LYS B 3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 52 CG CD OE1 OE2 REMARK 470 GLN A 201 CG CD OE1 NE2 REMARK 470 GLU A 223 CG CD OE1 OE2 REMARK 470 ASP A 224 CG OD1 OD2 REMARK 470 GLU B 192 CG CD OE1 OE2 REMARK 470 GLN B 201 CG CD OE1 NE2 REMARK 470 ASP B 224 CG OD1 OD2 REMARK 470 LEU B 340 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 6 117.45 -160.00 REMARK 500 TRP A 92 -135.53 -109.24 REMARK 500 ASN A 93 -131.41 -99.72 REMARK 500 ILE A 253 -53.22 -124.02 REMARK 500 THR A 254 -85.81 -104.62 REMARK 500 ASN B 26 59.73 -153.95 REMARK 500 TRP B 92 -129.67 -111.47 REMARK 500 ASN B 93 -142.75 -108.32 REMARK 500 GLU B 223 -68.94 -107.29 REMARK 500 THR B 254 -97.85 -98.92 REMARK 500 ASN B 285 99.76 -65.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 423 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 423 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 390749 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3EZ1 A 1 422 UNP Q1IZU0 Q1IZU0_DEIGD 1 422 DBREF 3EZ1 B 1 422 UNP Q1IZU0 Q1IZU0_DEIGD 1 422 SEQADV 3EZ1 GLY A 0 UNP Q1IZU0 EXPRESSION TAG SEQADV 3EZ1 GLY B 0 UNP Q1IZU0 EXPRESSION TAG SEQRES 1 A 423 GLY MSE THR LYS GLU ALA SER ARG PRO ALA LEU ASP LEU SEQRES 2 A 423 ALA ARG GLN ALA TYR GLU ALA PHE LYS ALA ARG GLY LEU SEQRES 3 A 423 ASN LEU ASN MSE GLN ARG GLY GLN PRO ALA ASP ALA ASP SEQRES 4 A 423 PHE ASP LEU SER ASN GLY LEU LEU THR VAL LEU GLY ALA SEQRES 5 A 423 GLU ASP VAL ARG MSE ASP GLY LEU ASP LEU ARG ASN TYR SEQRES 6 A 423 PRO GLY GLY VAL ALA GLY LEU PRO SER ALA ARG ALA LEU SEQRES 7 A 423 PHE ALA GLY TYR LEU ASP VAL LYS ALA GLU ASN VAL LEU SEQRES 8 A 423 VAL TRP ASN ASN SER SER LEU GLU LEU GLN GLY LEU VAL SEQRES 9 A 423 LEU THR PHE ALA LEU LEU HIS GLY VAL ARG GLY SER THR SEQRES 10 A 423 GLY PRO TRP LEU SER GLN THR PRO LYS MSE ILE VAL THR SEQRES 11 A 423 VAL PRO GLY TYR ASP ARG HIS PHE LEU LEU LEU GLN THR SEQRES 12 A 423 LEU GLY PHE GLU LEU LEU THR VAL ASP MSE GLN SER ASP SEQRES 13 A 423 GLY PRO ASP VAL ASP ALA VAL GLU ARG LEU ALA GLY THR SEQRES 14 A 423 ASP PRO SER VAL LYS GLY ILE LEU PHE VAL PRO THR TYR SEQRES 15 A 423 SER ASN PRO GLY GLY GLU THR ILE SER LEU GLU LYS ALA SEQRES 16 A 423 ARG ARG LEU ALA GLY LEU GLN ALA ALA ALA PRO ASP PHE SEQRES 17 A 423 THR ILE PHE ALA ASP ASP ALA TYR ARG VAL HIS HIS LEU SEQRES 18 A 423 VAL GLU GLU ASP ARG ALA GLU PRO VAL ASN PHE VAL VAL SEQRES 19 A 423 LEU ALA ARG ASP ALA GLY TYR PRO ASP ARG ALA PHE VAL SEQRES 20 A 423 PHE ALA SER THR SER LYS ILE THR PHE ALA GLY ALA GLY SEQRES 21 A 423 LEU GLY PHE VAL ALA SER SER GLU ASP ASN ILE ARG TRP SEQRES 22 A 423 LEU SER LYS TYR LEU GLY ALA GLN SER ILE GLY PRO ASN SEQRES 23 A 423 LYS VAL GLU GLN ALA ARG HIS VAL LYS PHE LEU THR GLU SEQRES 24 A 423 TYR PRO GLY GLY LEU GLU GLY LEU MSE ARG ASP HIS ALA SEQRES 25 A 423 ALA ILE ILE ALA PRO LYS PHE ARG ALA VAL ASP GLU VAL SEQRES 26 A 423 LEU ARG ALA GLU LEU GLY GLU GLY GLY GLU TYR ALA THR SEQRES 27 A 423 TRP THR LEU PRO LYS GLY GLY TYR PHE ILE SER LEU ASP SEQRES 28 A 423 THR ALA GLU PRO VAL ALA ASP ARG VAL VAL LYS LEU ALA SEQRES 29 A 423 GLU ALA ALA GLY VAL SER LEU THR PRO ALA GLY ALA THR SEQRES 30 A 423 TYR PRO ALA GLY GLN ASP PRO HIS ASN ARG ASN LEU ARG SEQRES 31 A 423 LEU ALA PRO THR ARG PRO PRO VAL GLU GLU VAL ARG THR SEQRES 32 A 423 ALA MSE GLN VAL VAL ALA ALA CYS ILE ARG LEU ALA THR SEQRES 33 A 423 GLU GLU TYR ARG ALA GLY HIS SEQRES 1 B 423 GLY MSE THR LYS GLU ALA SER ARG PRO ALA LEU ASP LEU SEQRES 2 B 423 ALA ARG GLN ALA TYR GLU ALA PHE LYS ALA ARG GLY LEU SEQRES 3 B 423 ASN LEU ASN MSE GLN ARG GLY GLN PRO ALA ASP ALA ASP SEQRES 4 B 423 PHE ASP LEU SER ASN GLY LEU LEU THR VAL LEU GLY ALA SEQRES 5 B 423 GLU ASP VAL ARG MSE ASP GLY LEU ASP LEU ARG ASN TYR SEQRES 6 B 423 PRO GLY GLY VAL ALA GLY LEU PRO SER ALA ARG ALA LEU SEQRES 7 B 423 PHE ALA GLY TYR LEU ASP VAL LYS ALA GLU ASN VAL LEU SEQRES 8 B 423 VAL TRP ASN ASN SER SER LEU GLU LEU GLN GLY LEU VAL SEQRES 9 B 423 LEU THR PHE ALA LEU LEU HIS GLY VAL ARG GLY SER THR SEQRES 10 B 423 GLY PRO TRP LEU SER GLN THR PRO LYS MSE ILE VAL THR SEQRES 11 B 423 VAL PRO GLY TYR ASP ARG HIS PHE LEU LEU LEU GLN THR SEQRES 12 B 423 LEU GLY PHE GLU LEU LEU THR VAL ASP MSE GLN SER ASP SEQRES 13 B 423 GLY PRO ASP VAL ASP ALA VAL GLU ARG LEU ALA GLY THR SEQRES 14 B 423 ASP PRO SER VAL LYS GLY ILE LEU PHE VAL PRO THR TYR SEQRES 15 B 423 SER ASN PRO GLY GLY GLU THR ILE SER LEU GLU LYS ALA SEQRES 16 B 423 ARG ARG LEU ALA GLY LEU GLN ALA ALA ALA PRO ASP PHE SEQRES 17 B 423 THR ILE PHE ALA ASP ASP ALA TYR ARG VAL HIS HIS LEU SEQRES 18 B 423 VAL GLU GLU ASP ARG ALA GLU PRO VAL ASN PHE VAL VAL SEQRES 19 B 423 LEU ALA ARG ASP ALA GLY TYR PRO ASP ARG ALA PHE VAL SEQRES 20 B 423 PHE ALA SER THR SER LYS ILE THR PHE ALA GLY ALA GLY SEQRES 21 B 423 LEU GLY PHE VAL ALA SER SER GLU ASP ASN ILE ARG TRP SEQRES 22 B 423 LEU SER LYS TYR LEU GLY ALA GLN SER ILE GLY PRO ASN SEQRES 23 B 423 LYS VAL GLU GLN ALA ARG HIS VAL LYS PHE LEU THR GLU SEQRES 24 B 423 TYR PRO GLY GLY LEU GLU GLY LEU MSE ARG ASP HIS ALA SEQRES 25 B 423 ALA ILE ILE ALA PRO LYS PHE ARG ALA VAL ASP GLU VAL SEQRES 26 B 423 LEU ARG ALA GLU LEU GLY GLU GLY GLY GLU TYR ALA THR SEQRES 27 B 423 TRP THR LEU PRO LYS GLY GLY TYR PHE ILE SER LEU ASP SEQRES 28 B 423 THR ALA GLU PRO VAL ALA ASP ARG VAL VAL LYS LEU ALA SEQRES 29 B 423 GLU ALA ALA GLY VAL SER LEU THR PRO ALA GLY ALA THR SEQRES 30 B 423 TYR PRO ALA GLY GLN ASP PRO HIS ASN ARG ASN LEU ARG SEQRES 31 B 423 LEU ALA PRO THR ARG PRO PRO VAL GLU GLU VAL ARG THR SEQRES 32 B 423 ALA MSE GLN VAL VAL ALA ALA CYS ILE ARG LEU ALA THR SEQRES 33 B 423 GLU GLU TYR ARG ALA GLY HIS MODRES 3EZ1 MSE A 29 MET SELENOMETHIONINE MODRES 3EZ1 MSE A 56 MET SELENOMETHIONINE MODRES 3EZ1 MSE A 126 MET SELENOMETHIONINE MODRES 3EZ1 MSE A 152 MET SELENOMETHIONINE MODRES 3EZ1 MSE A 307 MET SELENOMETHIONINE MODRES 3EZ1 MSE A 404 MET SELENOMETHIONINE MODRES 3EZ1 MSE B 29 MET SELENOMETHIONINE MODRES 3EZ1 MSE B 56 MET SELENOMETHIONINE MODRES 3EZ1 MSE B 126 MET SELENOMETHIONINE MODRES 3EZ1 MSE B 152 MET SELENOMETHIONINE MODRES 3EZ1 MSE B 307 MET SELENOMETHIONINE MODRES 3EZ1 MSE B 404 MET SELENOMETHIONINE HET MSE A 29 8 HET MSE A 56 8 HET MSE A 126 8 HET MSE A 152 8 HET MSE A 307 8 HET MSE A 404 8 HET MSE B 29 8 HET MSE B 56 8 HET MSE B 126 8 HET MSE B 152 8 HET MSE B 307 8 HET MSE B 404 8 HET PO4 A 423 5 HET PO4 B 423 5 HETNAM MSE SELENOMETHIONINE HETNAM PO4 PHOSPHATE ION FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 3 PO4 2(O4 P 3-) FORMUL 5 HOH *131(H2 O) HELIX 1 1 SER A 6 GLY A 24 1 19 HELIX 2 2 ALA A 35 LEU A 41 1 7 HELIX 3 3 SER A 42 VAL A 48 5 7 HELIX 4 4 GLY A 50 ASP A 53 5 4 HELIX 5 5 LEU A 71 LEU A 82 1 12 HELIX 6 6 LYS A 85 GLU A 87 5 3 HELIX 7 7 SER A 95 HIS A 110 1 16 HELIX 8 8 PRO A 118 THR A 123 5 6 HELIX 9 9 TYR A 133 GLY A 144 1 12 HELIX 10 10 ASP A 158 THR A 168 1 11 HELIX 11 11 SER A 190 GLY A 199 1 10 HELIX 12 12 ASN A 230 GLY A 239 1 10 HELIX 13 13 SER A 266 GLN A 280 1 15 HELIX 14 14 ASN A 285 TYR A 299 1 15 HELIX 15 15 GLY A 301 GLY A 330 1 30 HELIX 16 16 VAL A 355 ALA A 366 1 12 HELIX 17 17 PRO A 396 ALA A 420 1 25 HELIX 18 18 SER B 6 ALA B 22 1 17 HELIX 19 19 ALA B 35 LEU B 41 1 7 HELIX 20 20 SER B 42 VAL B 48 5 7 HELIX 21 21 LEU B 71 LEU B 82 1 12 HELIX 22 22 LYS B 85 GLU B 87 5 3 HELIX 23 23 SER B 95 GLY B 111 1 17 HELIX 24 24 PRO B 118 THR B 123 5 6 HELIX 25 25 TYR B 133 GLY B 144 1 12 HELIX 26 26 ASP B 158 ASP B 169 1 12 HELIX 27 27 SER B 190 GLY B 199 1 10 HELIX 28 28 ASN B 230 GLY B 239 1 10 HELIX 29 29 SER B 266 SER B 281 1 16 HELIX 30 30 ASN B 285 TYR B 299 1 15 HELIX 31 31 GLY B 301 GLY B 330 1 30 HELIX 32 32 VAL B 355 GLY B 367 1 13 HELIX 33 33 PRO B 396 ALA B 420 1 25 SHEET 1 A 2 LEU A 27 ASN A 28 0 SHEET 2 A 2 VAL A 368 SER A 369 1 O SER A 369 N LEU A 27 SHEET 1 B 2 ARG A 55 MSE A 56 0 SHEET 2 B 2 LEU A 59 ASP A 60 -1 O LEU A 59 N MSE A 56 SHEET 1 C 8 VAL A 89 VAL A 91 0 SHEET 2 C 8 GLY A 261 SER A 265 -1 O VAL A 263 N LEU A 90 SHEET 3 C 8 ALA A 244 SER A 249 -1 N VAL A 246 O ALA A 264 SHEET 4 C 8 THR A 208 ASP A 212 1 N ILE A 209 O PHE A 245 SHEET 5 C 8 VAL A 172 PHE A 177 1 N ILE A 175 O PHE A 210 SHEET 6 C 8 LYS A 125 VAL A 130 1 N ILE A 127 O GLY A 174 SHEET 7 C 8 GLU A 146 GLN A 153 1 O VAL A 150 N VAL A 130 SHEET 8 C 8 GLY A 156 PRO A 157 -1 O GLY A 156 N GLN A 153 SHEET 1 D 3 ALA A 336 TRP A 338 0 SHEET 2 D 3 ILE A 347 THR A 351 -1 O ASP A 350 N THR A 337 SHEET 3 D 3 ASN A 387 LEU A 390 -1 O LEU A 390 N ILE A 347 SHEET 1 E 2 LEU B 27 ASN B 28 0 SHEET 2 E 2 VAL B 368 SER B 369 1 O SER B 369 N LEU B 27 SHEET 1 F 2 ARG B 55 MSE B 56 0 SHEET 2 F 2 LEU B 59 ASP B 60 -1 O LEU B 59 N MSE B 56 SHEET 1 G 8 VAL B 89 VAL B 91 0 SHEET 2 G 8 GLY B 261 ALA B 264 -1 O VAL B 263 N LEU B 90 SHEET 3 G 8 ALA B 244 SER B 249 -1 N VAL B 246 O ALA B 264 SHEET 4 G 8 THR B 208 ASP B 212 1 N ILE B 209 O PHE B 245 SHEET 5 G 8 VAL B 172 PHE B 177 1 N ILE B 175 O PHE B 210 SHEET 6 G 8 LYS B 125 VAL B 130 1 N ILE B 127 O GLY B 174 SHEET 7 G 8 GLU B 146 GLN B 153 1 O VAL B 150 N VAL B 130 SHEET 8 G 8 GLY B 156 PRO B 157 -1 O GLY B 156 N GLN B 153 SHEET 1 H 3 ALA B 336 TRP B 338 0 SHEET 2 H 3 ILE B 347 THR B 351 -1 O ASP B 350 N THR B 337 SHEET 3 H 3 ASN B 387 LEU B 390 -1 O LEU B 388 N LEU B 349 LINK C ASN A 28 N MSE A 29 1555 1555 1.34 LINK C MSE A 29 N GLN A 30 1555 1555 1.34 LINK C ARG A 55 N MSE A 56 1555 1555 1.34 LINK C MSE A 56 N ASP A 57 1555 1555 1.34 LINK C LYS A 125 N MSE A 126 1555 1555 1.34 LINK C MSE A 126 N ILE A 127 1555 1555 1.33 LINK C ASP A 151 N MSE A 152 1555 1555 1.34 LINK C MSE A 152 N GLN A 153 1555 1555 1.33 LINK C LEU A 306 N MSE A 307 1555 1555 1.34 LINK C MSE A 307 N ARG A 308 1555 1555 1.33 LINK C ALA A 403 N MSE A 404 1555 1555 1.34 LINK C MSE A 404 N GLN A 405 1555 1555 1.34 LINK C ASN B 28 N MSE B 29 1555 1555 1.34 LINK C MSE B 29 N GLN B 30 1555 1555 1.34 LINK C ARG B 55 N MSE B 56 1555 1555 1.34 LINK C MSE B 56 N ASP B 57 1555 1555 1.34 LINK C LYS B 125 N MSE B 126 1555 1555 1.33 LINK C MSE B 126 N ILE B 127 1555 1555 1.34 LINK C ASP B 151 N MSE B 152 1555 1555 1.34 LINK C MSE B 152 N GLN B 153 1555 1555 1.33 LINK C LEU B 306 N MSE B 307 1555 1555 1.34 LINK C MSE B 307 N ARG B 308 1555 1555 1.33 LINK C ALA B 403 N MSE B 404 1555 1555 1.34 LINK C MSE B 404 N GLN B 405 1555 1555 1.34 CISPEP 1 VAL A 130 PRO A 131 0 -0.44 CISPEP 2 ASN A 183 PRO A 184 0 -0.35 CISPEP 3 VAL B 130 PRO B 131 0 -2.94 CISPEP 4 ASN B 183 PRO B 184 0 -0.38 SITE 1 AC1 6 SER A 95 SER A 96 LEU A 97 SER A 249 SITE 2 AC1 6 SER A 251 TYR B 64 SITE 1 AC2 6 TYR A 64 SER B 95 SER B 96 LEU B 97 SITE 2 AC2 6 SER B 249 SER B 251 CRYST1 62.720 103.969 73.815 90.00 112.63 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015944 0.000000 0.006647 0.00000 SCALE2 0.000000 0.009618 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014678 0.00000