HEADER DNA BINDING PROTEIN 22-OCT-08 3EZ2 TITLE PARTITION PROTEIN-ADP COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: PLASMID PARTITION PROTEIN A; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET15-B KEYWDS PAR, PARTITION, TYPE IA, DNA BINDING, WINGED-HTH, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.A.SCHUMACHER,T.D.DUNHAM,W.XU,B.FUNNELL REVDAT 4 06-SEP-23 3EZ2 1 REMARK LINK REVDAT 3 13-JUL-11 3EZ2 1 VERSN REVDAT 2 05-MAY-10 3EZ2 1 JRNL REVDAT 1 02-JUN-09 3EZ2 0 JRNL AUTH T.D.DUNHAM,W.XU,B.E.FUNNELL,M.A.SCHUMACHER JRNL TITL STRUCTURAL BASIS FOR ADP-MEDIATED TRANSCRIPTIONAL REGULATION JRNL TITL 2 BY P1 AND P7 PARA. JRNL REF EMBO J. V. 28 1792 2009 JRNL REFN ISSN 0261-4189 JRNL PMID 19461582 JRNL DOI 10.1038/EMBOJ.2009.120 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.94 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 2349135.300 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 70630 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 7162 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.18 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.70 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 10518 REMARK 3 BIN R VALUE (WORKING SET) : 0.2550 REMARK 3 BIN FREE R VALUE : 0.2950 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.30 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 1205 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.009 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6116 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 137 REMARK 3 SOLVENT ATOMS : 546 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.36000 REMARK 3 B22 (A**2) : 5.45000 REMARK 3 B33 (A**2) : -2.09000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.23 REMARK 3 ESD FROM SIGMAA (A) : 0.18 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.28 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.23 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.014 REMARK 3 BOND ANGLES (DEGREES) : 1.600 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.50 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.000 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 3.720 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 4.760 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 6.080 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 8.100 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 58.55 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : ADP.PARAM REMARK 3 PARAMETER FILE 5 : GLYCEROL-HEPES.PARAM.TXT REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : ION.TOP REMARK 3 TOPOLOGY FILE 3 : ADP.TOP REMARK 3 TOPOLOGY FILE 4 : GLYCEROL-HEPES.TOP REMARK 3 TOPOLOGY FILE 5 : WATER.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 3EZ2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-OCT-08. REMARK 100 THE DEPOSITION ID IS D_1000049946. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-JAN-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 70677 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 63.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07600 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.48000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3EZ7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 6000, HEPES, PH 7.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.05000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.20000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 62.95000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 74.20000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.05000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 62.95000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -70.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ASP A 3 REMARK 465 SER A 4 REMARK 465 ASP A 30 REMARK 465 GLU A 31 REMARK 465 LEU A 32 REMARK 465 HIS A 33 REMARK 465 ALA A 34 REMARK 465 ASN A 35 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 ASP B 3 REMARK 465 SER B 4 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 19 OD1 ND2 REMARK 470 ASN B 19 OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 134 NE - CZ - NH1 ANGL. DEV. = 5.1 DEGREES REMARK 500 ARG A 134 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 ARG B 102 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG B 102 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG B 396 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 51 -6.39 73.45 REMARK 500 ALA A 76 76.26 -117.70 REMARK 500 SER A 78 -87.78 -81.17 REMARK 500 ASN A 115 126.01 175.68 REMARK 500 SER A 121 22.82 93.11 REMARK 500 LYS A 164 -54.42 -24.46 REMARK 500 HIS A 165 35.99 -97.14 REMARK 500 VAL A 237 -64.75 -131.76 REMARK 500 GLN A 306 34.12 -88.63 REMARK 500 ALA A 308 -87.96 -68.73 REMARK 500 LEU B 51 -5.10 71.74 REMARK 500 ASN B 115 120.51 -179.31 REMARK 500 SER B 121 21.74 95.67 REMARK 500 VAL B 237 -69.48 -131.12 REMARK 500 GLU B 301 41.39 -106.90 REMARK 500 ALA B 308 -72.10 -60.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 399 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 123 OG1 REMARK 620 2 ADP A 501 O2B 84.5 REMARK 620 3 HOH A 638 O 172.8 100.3 REMARK 620 4 HOH A 851 O 81.3 92.9 93.0 REMARK 620 5 HOH A 852 O 83.9 168.3 91.4 87.0 REMARK 620 6 HOH A 853 O 87.3 86.7 98.3 168.6 91.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 399 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 123 OG1 REMARK 620 2 ADP B 502 O2B 90.1 REMARK 620 3 HOH B 832 O 93.5 89.8 REMARK 620 4 HOH B 850 O 82.2 172.4 90.8 REMARK 620 5 HOH B 857 O 82.9 92.0 175.9 86.9 REMARK 620 6 HOH B 887 O 171.0 96.2 93.0 91.4 90.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 399 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 399 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EPE B 3022 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP B 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 545 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 445 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3EZ6 RELATED DB: PDB REMARK 900 ADP BOUND FORM 2, IN SPACE GROUP P41212 REMARK 900 RELATED ID: 3EZ7 RELATED DB: PDB REMARK 900 APO FORM IN SPACE GROUP I4122 REMARK 900 RELATED ID: 3EZ9 RELATED DB: PDB REMARK 900 MG BOUND PARTITIONING PROTEIN A FROM YERSINIA PESTIS REMARK 900 RELATED ID: 3EZF RELATED DB: PDB REMARK 900 PARTITIONING PROTEIN A FROM YERSINIA PESTIS DBREF 3EZ2 A 1 398 UNP P07620 PARA_ECOLX 1 398 DBREF 3EZ2 B 1 398 UNP P07620 PARA_ECOLX 1 398 SEQRES 1 A 398 MET SER ASP SER SER GLN LEU HIS LYS VAL ALA GLN ARG SEQRES 2 A 398 ALA ASN ARG MET LEU ASN VAL LEU THR GLU GLN VAL GLN SEQRES 3 A 398 LEU GLN LYS ASP GLU LEU HIS ALA ASN GLU PHE TYR GLN SEQRES 4 A 398 VAL TYR ALA LYS ALA ALA LEU ALA LYS LEU PRO LEU LEU SEQRES 5 A 398 THR ARG ALA ASN VAL ASP TYR ALA VAL SER GLU MET GLU SEQRES 6 A 398 GLU LYS GLY TYR VAL PHE ASP LYS ARG PRO ALA GLY SER SEQRES 7 A 398 SER MET LYS TYR ALA MET SER ILE GLN ASN ILE ILE ASP SEQRES 8 A 398 ILE TYR GLU HIS ARG GLY VAL PRO LYS TYR ARG ASP ARG SEQRES 9 A 398 TYR SER GLU ALA TYR VAL ILE PHE ILE SER ASN LEU LYS SEQRES 10 A 398 GLY GLY VAL SER LYS THR VAL SER THR VAL SER LEU ALA SEQRES 11 A 398 HIS ALA MET ARG ALA HIS PRO HIS LEU LEU MET GLU ASP SEQRES 12 A 398 LEU ARG ILE LEU VAL ILE ASP LEU ASP PRO GLN SER SER SEQRES 13 A 398 ALA THR MET PHE LEU SER HIS LYS HIS SER ILE GLY ILE SEQRES 14 A 398 VAL ASN ALA THR SER ALA GLN ALA MET LEU GLN ASN VAL SEQRES 15 A 398 SER ARG GLU GLU LEU LEU GLU GLU PHE ILE VAL PRO SER SEQRES 16 A 398 VAL VAL PRO GLY VAL ASP VAL MET PRO ALA SER ILE ASP SEQRES 17 A 398 ASP ALA PHE ILE ALA SER ASP TRP ARG GLU LEU CYS ASN SEQRES 18 A 398 GLU HIS LEU PRO GLY GLN ASN ILE HIS ALA VAL LEU LYS SEQRES 19 A 398 GLU ASN VAL ILE ASP LYS LEU LYS SER ASP TYR ASP PHE SEQRES 20 A 398 ILE LEU VAL ASP SER GLY PRO HIS LEU ASP ALA PHE LEU SEQRES 21 A 398 LYS ASN ALA LEU ALA SER ALA ASN ILE LEU PHE THR PRO SEQRES 22 A 398 LEU PRO PRO ALA THR VAL ASP PHE HIS SER SER LEU LYS SEQRES 23 A 398 TYR VAL ALA ARG LEU PRO GLU LEU VAL LYS LEU ILE SER SEQRES 24 A 398 ASP GLU GLY CYS GLU CYS GLN LEU ALA THR ASN ILE GLY SEQRES 25 A 398 PHE MET SER LYS LEU SER ASN LYS ALA ASP HIS LYS TYR SEQRES 26 A 398 CYS HIS SER LEU ALA LYS GLU VAL PHE GLY GLY ASP MET SEQRES 27 A 398 LEU ASP VAL PHE LEU PRO ARG LEU ASP GLY PHE GLU ARG SEQRES 28 A 398 CYS GLY GLU SER PHE ASP THR VAL ILE SER ALA ASN PRO SEQRES 29 A 398 ALA THR TYR VAL GLY SER ALA ASP ALA LEU LYS ASN ALA SEQRES 30 A 398 ARG ILE ALA ALA GLU ASP PHE ALA LYS ALA VAL PHE ASP SEQRES 31 A 398 ARG ILE GLU PHE ILE ARG SER ASN SEQRES 1 B 398 MET SER ASP SER SER GLN LEU HIS LYS VAL ALA GLN ARG SEQRES 2 B 398 ALA ASN ARG MET LEU ASN VAL LEU THR GLU GLN VAL GLN SEQRES 3 B 398 LEU GLN LYS ASP GLU LEU HIS ALA ASN GLU PHE TYR GLN SEQRES 4 B 398 VAL TYR ALA LYS ALA ALA LEU ALA LYS LEU PRO LEU LEU SEQRES 5 B 398 THR ARG ALA ASN VAL ASP TYR ALA VAL SER GLU MET GLU SEQRES 6 B 398 GLU LYS GLY TYR VAL PHE ASP LYS ARG PRO ALA GLY SER SEQRES 7 B 398 SER MET LYS TYR ALA MET SER ILE GLN ASN ILE ILE ASP SEQRES 8 B 398 ILE TYR GLU HIS ARG GLY VAL PRO LYS TYR ARG ASP ARG SEQRES 9 B 398 TYR SER GLU ALA TYR VAL ILE PHE ILE SER ASN LEU LYS SEQRES 10 B 398 GLY GLY VAL SER LYS THR VAL SER THR VAL SER LEU ALA SEQRES 11 B 398 HIS ALA MET ARG ALA HIS PRO HIS LEU LEU MET GLU ASP SEQRES 12 B 398 LEU ARG ILE LEU VAL ILE ASP LEU ASP PRO GLN SER SER SEQRES 13 B 398 ALA THR MET PHE LEU SER HIS LYS HIS SER ILE GLY ILE SEQRES 14 B 398 VAL ASN ALA THR SER ALA GLN ALA MET LEU GLN ASN VAL SEQRES 15 B 398 SER ARG GLU GLU LEU LEU GLU GLU PHE ILE VAL PRO SER SEQRES 16 B 398 VAL VAL PRO GLY VAL ASP VAL MET PRO ALA SER ILE ASP SEQRES 17 B 398 ASP ALA PHE ILE ALA SER ASP TRP ARG GLU LEU CYS ASN SEQRES 18 B 398 GLU HIS LEU PRO GLY GLN ASN ILE HIS ALA VAL LEU LYS SEQRES 19 B 398 GLU ASN VAL ILE ASP LYS LEU LYS SER ASP TYR ASP PHE SEQRES 20 B 398 ILE LEU VAL ASP SER GLY PRO HIS LEU ASP ALA PHE LEU SEQRES 21 B 398 LYS ASN ALA LEU ALA SER ALA ASN ILE LEU PHE THR PRO SEQRES 22 B 398 LEU PRO PRO ALA THR VAL ASP PHE HIS SER SER LEU LYS SEQRES 23 B 398 TYR VAL ALA ARG LEU PRO GLU LEU VAL LYS LEU ILE SER SEQRES 24 B 398 ASP GLU GLY CYS GLU CYS GLN LEU ALA THR ASN ILE GLY SEQRES 25 B 398 PHE MET SER LYS LEU SER ASN LYS ALA ASP HIS LYS TYR SEQRES 26 B 398 CYS HIS SER LEU ALA LYS GLU VAL PHE GLY GLY ASP MET SEQRES 27 B 398 LEU ASP VAL PHE LEU PRO ARG LEU ASP GLY PHE GLU ARG SEQRES 28 B 398 CYS GLY GLU SER PHE ASP THR VAL ILE SER ALA ASN PRO SEQRES 29 B 398 ALA THR TYR VAL GLY SER ALA ASP ALA LEU LYS ASN ALA SEQRES 30 B 398 ARG ILE ALA ALA GLU ASP PHE ALA LYS ALA VAL PHE ASP SEQRES 31 B 398 ARG ILE GLU PHE ILE ARG SER ASN HET ADP A 501 27 HET MG A 399 1 HET ADP A 509 27 HET ADP B 502 27 HET MG B 399 1 HET EPE B3022 15 HET ADP B 507 27 HET GOL B 545 6 HET GOL B 445 6 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETNAM GOL GLYCEROL HETSYN EPE HEPES HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 ADP 4(C10 H15 N5 O10 P2) FORMUL 4 MG 2(MG 2+) FORMUL 8 EPE C8 H18 N2 O4 S FORMUL 10 GOL 2(C3 H8 O3) FORMUL 12 HOH *546(H2 O) HELIX 1 1 SER A 5 GLN A 26 1 22 HELIX 2 2 ALA A 42 LEU A 49 5 8 HELIX 3 3 THR A 53 GLY A 68 1 16 HELIX 4 4 SER A 85 ARG A 96 1 12 HELIX 5 5 LYS A 100 ARG A 104 5 5 HELIX 6 6 SER A 121 HIS A 136 1 16 HELIX 7 7 LEU A 139 ASP A 143 5 5 HELIX 8 8 SER A 155 SER A 162 1 8 HELIX 9 9 HIS A 163 GLY A 168 1 6 HELIX 10 10 THR A 173 ASN A 181 1 9 HELIX 11 11 SER A 183 PHE A 191 1 9 HELIX 12 12 ASP A 208 ASP A 215 1 8 HELIX 13 13 ASP A 215 LEU A 224 1 10 HELIX 14 14 ALA A 231 VAL A 237 1 7 HELIX 15 15 VAL A 237 LYS A 242 1 6 HELIX 16 16 ASP A 257 ALA A 267 1 11 HELIX 17 17 ALA A 277 GLU A 301 1 25 HELIX 18 18 LYS A 320 GLY A 335 1 16 HELIX 19 19 GLY A 336 MET A 338 5 3 HELIX 20 20 LEU A 346 SER A 355 1 10 HELIX 21 21 SER A 370 ASN A 398 1 29 HELIX 22 22 SER B 5 LYS B 29 1 25 HELIX 23 23 HIS B 33 PHE B 37 5 5 HELIX 24 24 ALA B 42 LEU B 49 5 8 HELIX 25 25 THR B 53 LYS B 67 1 15 HELIX 26 26 SER B 85 ARG B 96 1 12 HELIX 27 27 LYS B 100 TYR B 105 1 6 HELIX 28 28 SER B 121 ALA B 135 1 15 HELIX 29 29 LEU B 139 ASP B 143 5 5 HELIX 30 30 SER B 155 SER B 162 1 8 HELIX 31 31 HIS B 163 GLY B 168 1 6 HELIX 32 32 THR B 173 ASN B 181 1 9 HELIX 33 33 SER B 183 PHE B 191 1 9 HELIX 34 34 ASP B 208 ASP B 215 1 8 HELIX 35 35 ASP B 215 LEU B 224 1 10 HELIX 36 36 ALA B 231 VAL B 237 1 7 HELIX 37 37 VAL B 237 LYS B 242 1 6 HELIX 38 38 ASP B 257 ALA B 267 1 11 HELIX 39 39 ALA B 277 GLU B 301 1 25 HELIX 40 40 LYS B 320 GLY B 335 1 16 HELIX 41 41 GLY B 336 MET B 338 5 3 HELIX 42 42 LEU B 346 SER B 355 1 10 HELIX 43 43 SER B 370 ASN B 398 1 29 SHEET 1 A 2 LYS A 73 PRO A 75 0 SHEET 2 A 2 MET A 80 TYR A 82 -1 O LYS A 81 N ARG A 74 SHEET 1 B 8 VAL A 193 PRO A 194 0 SHEET 2 B 8 VAL A 200 MET A 203 -1 O VAL A 202 N VAL A 193 SHEET 3 B 8 ILE A 146 LEU A 151 1 N ILE A 146 O ASP A 201 SHEET 4 B 8 PHE A 247 SER A 252 1 O ASP A 251 N LEU A 151 SHEET 5 B 8 TYR A 109 ILE A 113 1 N ILE A 111 O ILE A 248 SHEET 6 B 8 ILE A 269 LEU A 274 1 O ILE A 269 N PHE A 112 SHEET 7 B 8 ASN A 310 LEU A 317 1 O PHE A 313 N LEU A 274 SHEET 8 B 8 LEU A 343 PRO A 344 1 O LEU A 343 N MET A 314 SHEET 1 C 2 LYS B 73 ALA B 76 0 SHEET 2 C 2 SER B 79 TYR B 82 -1 O SER B 79 N ALA B 76 SHEET 1 D 8 VAL B 193 PRO B 194 0 SHEET 2 D 8 VAL B 200 MET B 203 -1 O VAL B 202 N VAL B 193 SHEET 3 D 8 ILE B 146 LEU B 151 1 N ILE B 146 O ASP B 201 SHEET 4 D 8 PHE B 247 SER B 252 1 O ASP B 251 N LEU B 151 SHEET 5 D 8 TYR B 109 ILE B 113 1 N ILE B 111 O ILE B 248 SHEET 6 D 8 ILE B 269 LEU B 274 1 O ILE B 269 N PHE B 112 SHEET 7 D 8 ASN B 310 LEU B 317 1 O PHE B 313 N LEU B 274 SHEET 8 D 8 LEU B 343 PRO B 344 1 O LEU B 343 N MET B 314 LINK OG1 THR A 123 MG MG A 399 1555 1555 2.25 LINK MG MG A 399 O2B ADP A 501 1555 1555 2.31 LINK MG MG A 399 O HOH A 638 1555 1555 2.13 LINK MG MG A 399 O HOH A 851 1555 1555 2.18 LINK MG MG A 399 O HOH A 852 1555 1555 2.29 LINK MG MG A 399 O HOH A 853 1555 1555 2.19 LINK OG1 THR B 123 MG MG B 399 1555 1555 2.21 LINK MG MG B 399 O2B ADP B 502 1555 1555 2.21 LINK MG MG B 399 O HOH B 832 1555 1555 2.17 LINK MG MG B 399 O HOH B 850 1555 1555 2.30 LINK MG MG B 399 O HOH B 857 1555 1555 2.24 LINK MG MG B 399 O HOH B 887 1555 1555 2.29 SITE 1 AC1 20 GLY A 119 VAL A 120 SER A 121 LYS A 122 SITE 2 AC1 20 THR A 123 VAL A 124 LYS A 316 PRO A 344 SITE 3 AC1 20 ARG A 345 LEU A 346 PHE A 349 GLU A 350 SITE 4 AC1 20 MG A 399 HOH A 499 HOH A 534 HOH A 536 SITE 5 AC1 20 HOH A 615 HOH A 638 HOH A 801 HOH A 853 SITE 1 AC2 6 THR A 123 ADP A 501 HOH A 638 HOH A 851 SITE 2 AC2 6 HOH A 852 HOH A 853 SITE 1 AC3 9 MET A 159 SER A 162 HIS A 163 LYS A 164 SITE 2 AC3 9 PHE A 356 ALA B 277 VAL B 279 ASP B 280 SITE 3 AC3 9 LYS B 320 SITE 1 AC4 23 GLY B 119 VAL B 120 SER B 121 LYS B 122 SITE 2 AC4 23 THR B 123 VAL B 124 LYS B 316 PRO B 344 SITE 3 AC4 23 ARG B 345 LEU B 346 PHE B 349 GLU B 350 SITE 4 AC4 23 GLY B 353 MG B 399 HOH B 541 HOH B 575 SITE 5 AC4 23 HOH B 629 HOH B 630 HOH B 832 HOH B 874 SITE 6 AC4 23 HOH B 876 HOH B 887 HOH B 892 SITE 1 AC5 6 THR B 123 ADP B 502 HOH B 832 HOH B 850 SITE 2 AC5 6 HOH B 857 HOH B 887 SITE 1 AC6 10 LYS B 43 LYS B 73 MET B 80 LYS B 81 SITE 2 AC6 10 TYR B 82 ARG B 104 GLU B 142 HOH B 411 SITE 3 AC6 10 HOH B 457 HOH B 859 SITE 1 AC7 10 ALA A 277 VAL A 279 ASP A 280 MET B 159 SITE 2 AC7 10 SER B 162 HIS B 163 LYS B 164 PHE B 356 SITE 3 AC7 10 HOH B 717 HOH B 861 SITE 1 AC8 2 GLN B 176 HIS B 223 SITE 1 AC9 3 ALA B 42 TYR B 82 ALA B 83 CRYST1 60.100 125.900 148.400 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016639 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007943 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006739 0.00000