HEADER BIOSYNTHETIC PROTEIN 22-OCT-08 3EZF TITLE PARTITION PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PARA; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR SOURCE 3 NEWPORT STR. SL317; SOURCE 4 ORGANISM_TAXID: 454168; SOURCE 5 GENE: SNSL317_A0932 KEYWDS DNA BINDING, PARTITION, WINGED-HTH, BIOSYNTHETIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.A.SCHUMACHER REVDAT 4 27-DEC-23 3EZF 1 REMARK SEQADV REVDAT 3 05-MAY-10 3EZF 1 JRNL REVDAT 2 31-MAR-10 3EZF 1 JRNL REVDAT 1 02-JUN-09 3EZF 0 JRNL AUTH T.D.DUNHAM,W.XU,B.E.FUNNELL,M.A.SCHUMACHER JRNL TITL STRUCTURAL BASIS FOR ADP-MEDIATED TRANSCRIPTIONAL REGULATION JRNL TITL 2 BY P1 AND P7 PARA. JRNL REF EMBO J. V. 28 1792 2009 JRNL REFN ISSN 0261-4189 JRNL PMID 19461582 JRNL DOI 10.1038/EMBOJ.2009.120 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 94.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1767751.010 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 11541 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.253 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.000 REMARK 3 FREE R VALUE TEST SET COUNT : 925 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.009 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.98 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.30 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1737 REMARK 3 BIN R VALUE (WORKING SET) : 0.3610 REMARK 3 BIN FREE R VALUE : 0.4110 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 6.60 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 122 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.037 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2722 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 35 REMARK 3 SOLVENT ATOMS : 42 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 55.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 72.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.04000 REMARK 3 B22 (A**2) : 0.04000 REMARK 3 B33 (A**2) : -0.09000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.41 REMARK 3 ESD FROM SIGMAA (A) : 0.47 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.48 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.52 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.700 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.20 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.130 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 2.720 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 4.360 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 3.410 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 4.910 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.40 REMARK 3 BSOL : 76.22 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : ADP.PARAM REMARK 3 PARAMETER FILE 5 : GLYCEROL-HEPES.PARAM.TXT REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : ION.TOP REMARK 3 TOPOLOGY FILE 3 : ADP.TOP REMARK 3 TOPOLOGY FILE 4 : GLYCEROL-HEPES.TOP REMARK 3 TOPOLOGY FILE 5 : WATER.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 3EZF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-OCT-08. REMARK 100 THE DEPOSITION ID IS D_1000049954. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAY-07 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 7.7-8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11570 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 128.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05700 REMARK 200 FOR THE DATA SET : 9.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PHOSPHATE, PH 7.7-8.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 85.59333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 42.79667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 85.59333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 42.79667 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 85.59333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 42.79667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 85.59333 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 42.79667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: DIMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -192.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 54.73000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 94.79514 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -1 REMARK 465 MET A 0 REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 GLN A 24 REMARK 465 ASP A 25 REMARK 465 ILE A 26 REMARK 465 GLU A 27 REMARK 465 ASP A 28 REMARK 465 GLN A 29 REMARK 465 ARG A 30 REMARK 465 LYS A 31 REMARK 465 GLU A 32 REMARK 465 PHE A 33 REMARK 465 ASN A 34 REMARK 465 GLN A 35 REMARK 465 THR A 36 REMARK 465 GLU A 37 REMARK 465 LYS A 118 REMARK 465 GLY A 119 REMARK 465 GLY A 120 REMARK 465 VAL A 121 REMARK 465 SER A 122 REMARK 465 LYS A 123 REMARK 465 THR A 124 REMARK 465 VAL A 125 REMARK 465 ASP A 163 REMARK 465 HIS A 164 REMARK 465 THR A 165 REMARK 465 HIS A 166 REMARK 465 SER A 167 REMARK 465 ILE A 168 REMARK 465 ARG A 346 REMARK 465 LEU A 347 REMARK 465 ASP A 348 REMARK 465 GLY A 349 REMARK 465 PHE A 350 REMARK 465 GLU A 351 REMARK 465 ARG A 352 REMARK 465 CYS A 353 REMARK 465 GLY A 354 REMARK 465 GLU A 355 REMARK 465 SER A 356 REMARK 465 PHE A 357 REMARK 465 ASP A 358 REMARK 465 THR A 359 REMARK 465 VAL A 360 REMARK 465 ILE A 361 REMARK 465 SER A 362 REMARK 465 ALA A 363 REMARK 465 ASN A 364 REMARK 465 PRO A 365 REMARK 465 GLN A 366 REMARK 465 SER A 367 REMARK 465 TYR A 368 REMARK 465 PRO A 369 REMARK 465 GLY A 370 REMARK 465 SER A 371 REMARK 465 ALA A 372 REMARK 465 ALA A 400 REMARK 465 ALA A 401 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 162 CG CD1 CD2 REMARK 470 GLU A 373 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OH TYR A 5 OE1 GLU A 300 4665 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 219 CB GLU A 219 CG 0.139 REMARK 500 GLU A 219 CG GLU A 219 CD 0.132 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 44 NE - CZ - NH1 ANGL. DEV. = -4.7 DEGREES REMARK 500 VAL A 80 N - CA - CB ANGL. DEV. = -13.9 DEGREES REMARK 500 PRO A 109 C - N - CA ANGL. DEV. = 11.4 DEGREES REMARK 500 PRO A 109 CA - N - CD ANGL. DEV. = -39.2 DEGREES REMARK 500 PRO A 109 CA - CB - CG ANGL. DEV. = -11.8 DEGREES REMARK 500 GLU A 219 CG - CD - OE1 ANGL. DEV. = 14.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 4 0.44 -60.31 REMARK 500 TYR A 39 94.31 -177.24 REMARK 500 TYR A 70 129.81 63.23 REMARK 500 ASN A 79 -33.91 -176.95 REMARK 500 GLN A 82 -118.73 -107.03 REMARK 500 TYR A 83 95.27 163.01 REMARK 500 PRO A 109 84.13 87.21 REMARK 500 HIS A 137 153.22 -49.42 REMARK 500 THR A 159 -25.13 -36.28 REMARK 500 MET A 160 38.94 -75.89 REMARK 500 LEU A 172 -41.98 -150.39 REMARK 500 ASN A 182 52.42 35.47 REMARK 500 GLU A 191 -48.65 -132.84 REMARK 500 THR A 196 -162.65 -126.30 REMARK 500 SER A 215 -7.16 -48.50 REMARK 500 GLN A 216 19.51 -142.07 REMARK 500 ILE A 238 -64.82 -131.11 REMARK 500 ASP A 244 46.41 -84.53 REMARK 500 ASP A 245 -12.57 -149.56 REMARK 500 PRO A 255 -97.32 -72.99 REMARK 500 HIS A 256 -50.79 -18.55 REMARK 500 LEU A 257 144.69 -34.90 REMARK 500 ASP A 258 -67.35 -124.86 REMARK 500 THR A 290 7.13 -59.67 REMARK 500 MET A 318 123.19 -35.90 REMARK 500 ARG A 322 -78.77 -33.23 REMARK 500 GLU A 333 -82.22 -54.31 REMARK 500 ALA A 336 -121.81 42.75 REMARK 500 LEU A 375 -107.73 -95.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 599 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 598 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 597 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 596 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 696 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 796 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 896 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3EZ2 RELATED DB: PDB REMARK 900 ADP BOUND FORM 1, P1 REMARK 900 RELATED ID: 3EZ6 RELATED DB: PDB REMARK 900 ADP BOUND FORM 2, P1 REMARK 900 RELATED ID: 3EZ7 RELATED DB: PDB REMARK 900 APO, P1 REMARK 900 RELATED ID: 3EZ9 RELATED DB: PDB REMARK 900 APO FORM 1,P7 DBREF 3EZF A 1 401 UNP B4ABW6 B4ABW6_SALNE 1 401 SEQADV 3EZF MET A -1 UNP B4ABW6 EXPRESSION TAG SEQADV 3EZF MET A 0 UNP B4ABW6 EXPRESSION TAG SEQADV 3EZF ALA A 21 UNP B4ABW6 SER 21 CONFLICT SEQADV 3EZF ASP A 28 UNP B4ABW6 GLU 28 CONFLICT SEQADV 3EZF GLN A 35 UNP B4ABW6 LEU 35 CONFLICT SEQADV 3EZF ASP A 59 UNP B4ABW6 GLU 59 CONFLICT SEQADV 3EZF GLU A 67 UNP B4ABW6 ASP 67 CONFLICT SEQADV 3EZF ASP A 68 UNP B4ABW6 GLY 68 CONFLICT SEQADV 3EZF GLN A 71 UNP B4ABW6 GLU 71 CONFLICT SEQADV 3EZF ASN A 182 UNP B4ABW6 ASP 182 CONFLICT SEQADV 3EZF VAL A 198 UNP B4ABW6 ILE 198 CONFLICT SEQADV 3EZF ARG A 218 UNP B4ABW6 GLU 218 CONFLICT SEQADV 3EZF GLU A 219 UNP B4ABW6 ASP 219 CONFLICT SEQADV 3EZF GLU A 222 UNP B4ABW6 LYS 222 CONFLICT SEQADV 3EZF GLN A 228 UNP B4ABW6 MET 228 CONFLICT SEQADV 3EZF ASN A 229 UNP B4ABW6 LYS 229 CONFLICT SEQADV 3EZF GLN A 230 UNP B4ABW6 PRO 230 CONFLICT SEQADV 3EZF TYR A 231 UNP B4ABW6 SER 231 CONFLICT SEQADV 3EZF ILE A 233 UNP B4ABW6 VAL 233 CONFLICT SEQADV 3EZF ARG A 236 UNP B4ABW6 LYS 236 CONFLICT SEQADV 3EZF ASN A 237 UNP B4ABW6 LYS 237 CONFLICT SEQADV 3EZF ASP A 240 UNP B4ABW6 GLU 240 CONFLICT SEQADV 3EZF VAL A 360 UNP B4ABW6 ILE 360 CONFLICT SEQADV 3EZF THR A 380 UNP B4ABW6 ASN 380 CONFLICT SEQRES 1 A 403 MET MET MET LYS ARG ASP TYR GLY GLY VAL GLY THR ILE SEQRES 2 A 403 ALA LEU ARG ALA SER ALA LEU LEU LYS ALA MET SER GLN SEQRES 3 A 403 ASP ILE GLU ASP GLN ARG LYS GLU PHE ASN GLN THR GLU SEQRES 4 A 403 TYR TYR GLN THR PHE THR ARG ASN ALA VAL ALA LYS LEU SEQRES 5 A 403 PRO LYS LEU SER ARG ARG ILE VAL ASP GLN ALA ILE LYS SEQRES 6 A 403 GLU MET GLU GLU ASP GLY TYR GLN PHE ASN LYS LYS GLN SEQRES 7 A 403 VAL GLY ASN VAL GLU GLN TYR ALA LEU THR ILE GLN ASN SEQRES 8 A 403 VAL ILE ASP ILE TYR ALA HIS ARG LYS ILE PRO LYS TYR SEQRES 9 A 403 ARG ASP ILE HIS LYS SER PRO TYR VAL ILE PHE VAL VAL SEQRES 10 A 403 ASN LEU LYS GLY GLY VAL SER LYS THR VAL SER THR VAL SEQRES 11 A 403 THR LEU ALA HIS ALA LEU ARG VAL HIS GLN ASP LEU LEU SEQRES 12 A 403 ARG HIS ASP LEU ARG ILE LEU VAL ILE ASP LEU ASP PRO SEQRES 13 A 403 GLN ALA SER SER THR MET PHE LEU ASP HIS THR HIS SER SEQRES 14 A 403 ILE GLY SER ILE LEU GLU THR ALA ALA GLN ALA MET LEU SEQRES 15 A 403 ASN ASN LEU ASP ALA GLU THR LEU ARG LYS GLU VAL ILE SEQRES 16 A 403 ARG PRO THR ILE VAL PRO GLY VAL ASP VAL ILE PRO ALA SEQRES 17 A 403 SER ILE ASP ASP GLY PHE VAL ALA SER GLN TRP ARG GLU SEQRES 18 A 403 LEU VAL GLU GLU HIS LEU PRO GLY GLN ASN GLN TYR GLU SEQRES 19 A 403 ILE LEU ARG ARG ASN ILE ILE ASP ARG VAL ALA ASP ASP SEQRES 20 A 403 TYR ASP PHE ILE PHE ILE ASP THR GLY PRO HIS LEU ASP SEQRES 21 A 403 PRO PHE LEU LEU ASN GLY LEU ALA ALA SER ASP LEU LEU SEQRES 22 A 403 LEU THR PRO THR PRO PRO ALA GLN VAL ASP PHE HIS SER SEQRES 23 A 403 THR LEU LYS TYR LEU THR ARG LEU PRO GLU MET LEU GLU SEQRES 24 A 403 GLN LEU GLU GLU GLU GLY VAL GLU PRO ARG LEU SER ALA SEQRES 25 A 403 SER ILE GLY PHE MET SER LYS MET THR GLY LYS ARG ASP SEQRES 26 A 403 HIS GLU THR SER HIS SER LEU ALA ARG GLU VAL TYR ALA SEQRES 27 A 403 SER ASN ILE LEU ASP SER SER LEU PRO ARG LEU ASP GLY SEQRES 28 A 403 PHE GLU ARG CYS GLY GLU SER PHE ASP THR VAL ILE SER SEQRES 29 A 403 ALA ASN PRO GLN SER TYR PRO GLY SER ALA GLU ALA LEU SEQRES 30 A 403 LYS LYS ALA ARG THR GLU ALA GLU ARG PHE THR LYS ALA SEQRES 31 A 403 VAL PHE ASP ARG ILE GLU PHE VAL ARG GLY GLU ALA ALA HET SO4 A 599 5 HET SO4 A 598 5 HET SO4 A 597 5 HET SO4 A 596 5 HET SO4 A 696 5 HET SO4 A 796 5 HET SO4 A 896 5 HETNAM SO4 SULFATE ION FORMUL 2 SO4 7(O4 S 2-) FORMUL 9 HOH *42(H2 O) HELIX 1 1 GLY A 7 ALA A 21 1 15 HELIX 2 2 THR A 43 LYS A 49 1 7 HELIX 3 3 SER A 54 ASP A 68 1 15 HELIX 4 4 ILE A 87 ARG A 97 1 11 HELIX 5 5 LYS A 101 ILE A 105 5 5 HELIX 6 6 SER A 126 HIS A 137 1 12 HELIX 7 7 GLN A 138 ASP A 144 5 7 HELIX 8 8 THR A 174 ASN A 181 1 8 HELIX 9 9 ASP A 184 GLU A 191 1 8 HELIX 10 10 ASP A 209 SER A 215 1 7 HELIX 11 11 GLN A 216 LEU A 225 1 10 HELIX 12 12 GLU A 232 ILE A 238 1 7 HELIX 13 13 VAL A 242 TYR A 246 5 5 HELIX 14 14 ASP A 258 ALA A 266 1 9 HELIX 15 15 ALA A 278 THR A 290 1 13 HELIX 16 16 ARG A 291 GLU A 302 1 12 HELIX 17 17 LYS A 321 ALA A 336 1 16 HELIX 18 18 SER A 337 ILE A 339 5 3 HELIX 19 19 LEU A 375 GLU A 399 1 25 SHEET 1 A 2 THR A 41 PHE A 42 0 SHEET 2 A 2 LEU A 85 THR A 86 -1 O LEU A 85 N PHE A 42 SHEET 1 B 6 VAL A 201 ILE A 204 0 SHEET 2 B 6 ILE A 147 ASP A 151 1 N ILE A 147 O ASP A 202 SHEET 3 B 6 PHE A 248 ASP A 252 1 O PHE A 250 N LEU A 148 SHEET 4 B 6 TYR A 110 VAL A 114 1 N ILE A 112 O ILE A 249 SHEET 5 B 6 LEU A 270 THR A 275 1 O LEU A 272 N PHE A 113 SHEET 6 B 6 ALA A 310 MET A 315 1 O PHE A 314 N THR A 275 SITE 1 AC1 4 ILE A 105 HIS A 106 LYS A 107 SO4 A 598 SITE 1 AC2 2 ARG A 397 SO4 A 599 SITE 1 AC3 2 LYS A 52 SO4 A 596 SITE 1 AC4 3 LYS A 387 ASP A 391 SO4 A 597 SITE 1 AC5 2 THR A 43 ASN A 45 SITE 1 AC6 4 ARG A 135 PRO A 199 GLY A 200 HOH A 525 SITE 1 AC7 2 ARG A 56 ARG A 97 CRYST1 109.460 109.460 128.390 90.00 90.00 120.00 P 62 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009136 0.005275 0.000000 0.00000 SCALE2 0.000000 0.010549 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007789 0.00000