HEADER TRANSCRIPTION REGULATOR 24-OCT-08 3F0C TITLE CRYSTAL STRUCTURE OF TRANSCRIPTIONAL REGULATOR FROM CYTOPHAGA TITLE 2 HUTCHINSONII ATCC 33406 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATOR; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TETR-MOLECULE A; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CYTOPHAGA HUTCHINSONII; SOURCE 3 ORGANISM_TAXID: 269798; SOURCE 4 STRAIN: ATCC 33406; SOURCE 5 GENE: YCDC, CHU_0940; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS TETR, MCSG, PSI, SAD, STRUCTURAL GENOMICS, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, MIDWEST CENTER FOR STRUCTURAL GENOMICS, DNA-BINDING, KEYWDS 3 TRANSCRIPTION, TRANSCRIPTION REGULATION, TRANSCRIPTION REGULATOR EXPDTA X-RAY DIFFRACTION AUTHOR B.NOCEK,N.MALTSEVA,K.TAN,J.ABDULLAH,W.ESCHENFELDT,A.JOACHIMIAK, AUTHOR 2 MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 5 27-DEC-23 3F0C 1 REMARK LINK REVDAT 4 25-OCT-17 3F0C 1 REMARK REVDAT 3 13-JUL-11 3F0C 1 VERSN REVDAT 2 24-FEB-09 3F0C 1 VERSN REVDAT 1 11-NOV-08 3F0C 0 JRNL AUTH B.NOCEK,N.MALTSEVA,K.TAN,J.ABDULLAH,L.STOLS,W.ESCHENFELDT, JRNL AUTH 2 A.JOACHIMIAK JRNL TITL CRYSTAL STRUCTURE OF TRANSCRIPTIONAL REGULATOR FROM JRNL TITL 2 CYTOPHAGA HUTCHINSONII ATCC 33406 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.96 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0054 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.96 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 7335 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.600 REMARK 3 FREE R VALUE TEST SET COUNT : 350 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.96 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.03 REMARK 3 REFLECTION IN BIN (WORKING SET) : 527 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.82 REMARK 3 BIN R VALUE (WORKING SET) : 0.2740 REMARK 3 BIN FREE R VALUE SET COUNT : 26 REMARK 3 BIN FREE R VALUE : 0.2690 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1536 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 86.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.40000 REMARK 3 B22 (A**2) : -1.40000 REMARK 3 B33 (A**2) : 2.09000 REMARK 3 B12 (A**2) : -0.70000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.730 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.374 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.291 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 35.724 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.908 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1574 ; 0.020 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1085 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2108 ; 1.844 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2657 ; 1.002 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 191 ; 7.146 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 70 ;38.697 ;24.857 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 305 ;21.617 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 5 ;23.979 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 233 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1705 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 316 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 955 ; 0.698 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 393 ; 0.102 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1523 ; 1.415 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 619 ; 2.051 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 585 ; 3.402 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 15 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 10 A 23 REMARK 3 ORIGIN FOR THE GROUP (A): 41.1080 36.2700 -1.7630 REMARK 3 T TENSOR REMARK 3 T11: 0.6014 T22: 0.4160 REMARK 3 T33: 0.6633 T12: 0.1919 REMARK 3 T13: -0.0574 T23: 0.0965 REMARK 3 L TENSOR REMARK 3 L11: 15.2576 L22: 18.3122 REMARK 3 L33: 7.8195 L12: -8.3564 REMARK 3 L13: 3.8566 L23: -0.8146 REMARK 3 S TENSOR REMARK 3 S11: -0.4123 S12: 0.7139 S13: 0.3481 REMARK 3 S21: -0.2435 S22: 0.0596 S23: -1.3315 REMARK 3 S31: 0.0673 S32: 0.6674 S33: 0.3527 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 24 A 34 REMARK 3 ORIGIN FOR THE GROUP (A): 28.6950 38.5280 1.4110 REMARK 3 T TENSOR REMARK 3 T11: 0.5679 T22: 0.4591 REMARK 3 T33: 0.7947 T12: 0.3300 REMARK 3 T13: 0.0073 T23: 0.0583 REMARK 3 L TENSOR REMARK 3 L11: 16.2442 L22: 15.1964 REMARK 3 L33: 7.9242 L12: -5.0732 REMARK 3 L13: 4.1191 L23: 0.9433 REMARK 3 S TENSOR REMARK 3 S11: -1.0226 S12: -0.7297 S13: -0.2789 REMARK 3 S21: 0.8629 S22: 0.6464 S23: 1.8159 REMARK 3 S31: -0.2444 S32: -0.8502 S33: 0.3762 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 35 A 54 REMARK 3 ORIGIN FOR THE GROUP (A): 36.6500 27.8800 -1.1870 REMARK 3 T TENSOR REMARK 3 T11: 0.7976 T22: 0.5929 REMARK 3 T33: 1.0074 T12: 0.0750 REMARK 3 T13: 0.1080 T23: -0.1305 REMARK 3 L TENSOR REMARK 3 L11: 12.3350 L22: 14.7974 REMARK 3 L33: 3.4563 L12: -6.4617 REMARK 3 L13: 5.6928 L23: -0.7449 REMARK 3 S TENSOR REMARK 3 S11: 0.1688 S12: 0.4269 S13: -1.7127 REMARK 3 S21: -0.0077 S22: 0.1613 S23: 1.0465 REMARK 3 S31: 0.3688 S32: -0.0150 S33: -0.3301 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 55 A 64 REMARK 3 ORIGIN FOR THE GROUP (A): 37.3960 36.5870 8.0870 REMARK 3 T TENSOR REMARK 3 T11: 0.6984 T22: 0.4509 REMARK 3 T33: 0.9304 T12: 0.2100 REMARK 3 T13: -0.2954 T23: -0.0157 REMARK 3 L TENSOR REMARK 3 L11: 3.2860 L22: 6.2517 REMARK 3 L33: 11.2233 L12: -3.1148 REMARK 3 L13: 1.6563 L23: 4.2162 REMARK 3 S TENSOR REMARK 3 S11: 0.6853 S12: 0.1195 S13: -1.1021 REMARK 3 S21: 0.1729 S22: -0.3074 S23: 0.9380 REMARK 3 S31: 1.3992 S32: -0.4812 S33: -0.3779 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 65 A 70 REMARK 3 ORIGIN FOR THE GROUP (A): 44.9870 46.8260 7.6790 REMARK 3 T TENSOR REMARK 3 T11: 0.7384 T22: 0.7654 REMARK 3 T33: 0.7655 T12: 0.4660 REMARK 3 T13: -0.1630 T23: -0.0165 REMARK 3 L TENSOR REMARK 3 L11: 3.2162 L22: 14.7773 REMARK 3 L33: 3.1502 L12: 3.8995 REMARK 3 L13: 0.4496 L23: 5.9538 REMARK 3 S TENSOR REMARK 3 S11: 0.3892 S12: 0.4634 S13: -0.4137 REMARK 3 S21: 0.0485 S22: -0.1495 S23: -0.5531 REMARK 3 S31: 0.1294 S32: -0.0505 S33: -0.2397 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 71 A 76 REMARK 3 ORIGIN FOR THE GROUP (A): 51.1290 51.9150 7.1540 REMARK 3 T TENSOR REMARK 3 T11: 0.4677 T22: 0.8386 REMARK 3 T33: 0.8229 T12: 0.2955 REMARK 3 T13: 0.0948 T23: 0.0246 REMARK 3 L TENSOR REMARK 3 L11: 10.7321 L22: 16.6665 REMARK 3 L33: 13.1176 L12: 4.3839 REMARK 3 L13: -5.8995 L23: -6.2006 REMARK 3 S TENSOR REMARK 3 S11: 0.6648 S12: 0.9154 S13: -0.0208 REMARK 3 S21: -1.0678 S22: 0.0478 S23: -1.0942 REMARK 3 S31: -0.1463 S32: 0.8491 S33: -0.7126 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 77 A 94 REMARK 3 ORIGIN FOR THE GROUP (A): 50.8000 61.8740 10.0460 REMARK 3 T TENSOR REMARK 3 T11: 0.4221 T22: 0.5483 REMARK 3 T33: 0.7530 T12: 0.0906 REMARK 3 T13: 0.1874 T23: 0.1402 REMARK 3 L TENSOR REMARK 3 L11: 7.6719 L22: 7.5410 REMARK 3 L33: 5.8345 L12: -0.0194 REMARK 3 L13: 1.9251 L23: 2.7931 REMARK 3 S TENSOR REMARK 3 S11: 0.2813 S12: 0.6721 S13: 1.1543 REMARK 3 S21: -0.7063 S22: 0.1163 S23: -1.2640 REMARK 3 S31: -0.8517 S32: 1.1831 S33: -0.3976 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 95 A 106 REMARK 3 ORIGIN FOR THE GROUP (A): 35.9550 50.5810 8.4030 REMARK 3 T TENSOR REMARK 3 T11: 0.4275 T22: 0.6224 REMARK 3 T33: 0.6107 T12: 0.3008 REMARK 3 T13: -0.0767 T23: 0.0655 REMARK 3 L TENSOR REMARK 3 L11: 9.7241 L22: 8.6016 REMARK 3 L33: 6.2743 L12: 1.9722 REMARK 3 L13: 3.8194 L23: 4.6670 REMARK 3 S TENSOR REMARK 3 S11: 0.5170 S12: 0.6267 S13: -0.4500 REMARK 3 S21: -0.8189 S22: -0.4616 S23: 0.6090 REMARK 3 S31: 0.0713 S32: -0.5246 S33: -0.0553 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 107 A 126 REMARK 3 ORIGIN FOR THE GROUP (A): 36.6060 41.5560 17.7860 REMARK 3 T TENSOR REMARK 3 T11: 0.9811 T22: 0.7693 REMARK 3 T33: 0.8720 T12: -0.1744 REMARK 3 T13: -0.1380 T23: 0.1675 REMARK 3 L TENSOR REMARK 3 L11: 3.8816 L22: 2.3915 REMARK 3 L33: 4.3474 L12: -1.1549 REMARK 3 L13: 1.4369 L23: 0.7120 REMARK 3 S TENSOR REMARK 3 S11: 0.6439 S12: -0.8826 S13: -1.3230 REMARK 3 S21: 0.8008 S22: -0.3958 S23: 0.5231 REMARK 3 S31: 1.4226 S32: -0.7549 S33: -0.2481 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 127 A 133 REMARK 3 ORIGIN FOR THE GROUP (A): 47.3330 50.2460 19.0590 REMARK 3 T TENSOR REMARK 3 T11: 0.3574 T22: 0.4752 REMARK 3 T33: 0.5567 T12: 0.2043 REMARK 3 T13: -0.0966 T23: 0.1052 REMARK 3 L TENSOR REMARK 3 L11: 9.0985 L22: 13.2299 REMARK 3 L33: 14.3507 L12: -0.6370 REMARK 3 L13: -0.6622 L23: 4.3149 REMARK 3 S TENSOR REMARK 3 S11: 0.4559 S12: -0.5069 S13: -0.3667 REMARK 3 S21: 0.9188 S22: 0.0985 S23: -0.6734 REMARK 3 S31: 0.7670 S32: 0.3065 S33: -0.5544 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 134 A 147 REMARK 3 ORIGIN FOR THE GROUP (A): 56.5550 62.9210 18.5710 REMARK 3 T TENSOR REMARK 3 T11: 0.5214 T22: 0.9400 REMARK 3 T33: 1.3338 T12: -0.1486 REMARK 3 T13: -0.1038 T23: -0.0309 REMARK 3 L TENSOR REMARK 3 L11: 2.5994 L22: 0.8449 REMARK 3 L33: 6.0719 L12: -1.4569 REMARK 3 L13: -2.4931 L23: 1.6854 REMARK 3 S TENSOR REMARK 3 S11: 0.3222 S12: -0.0893 S13: 1.6003 REMARK 3 S21: -0.0896 S22: 0.4647 S23: -0.8843 REMARK 3 S31: -1.0993 S32: 1.5173 S33: -0.7869 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 148 A 166 REMARK 3 ORIGIN FOR THE GROUP (A): 46.3100 59.8880 24.1710 REMARK 3 T TENSOR REMARK 3 T11: 0.4358 T22: 0.6237 REMARK 3 T33: 0.6797 T12: 0.1227 REMARK 3 T13: -0.0323 T23: -0.0530 REMARK 3 L TENSOR REMARK 3 L11: 7.8646 L22: 7.5115 REMARK 3 L33: 7.0293 L12: 1.5227 REMARK 3 L13: 1.4413 L23: 2.8887 REMARK 3 S TENSOR REMARK 3 S11: 0.3374 S12: -1.1496 S13: 0.7180 REMARK 3 S21: 0.9655 S22: 0.0100 S23: -0.8461 REMARK 3 S31: -0.2067 S32: 0.4356 S33: -0.3475 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 167 A 172 REMARK 3 ORIGIN FOR THE GROUP (A): 31.0510 55.6700 18.0190 REMARK 3 T TENSOR REMARK 3 T11: 0.3701 T22: 0.7561 REMARK 3 T33: 0.7294 T12: 0.1828 REMARK 3 T13: 0.0663 T23: -0.0193 REMARK 3 L TENSOR REMARK 3 L11: 14.0211 L22: 11.1832 REMARK 3 L33: 10.3307 L12: -3.4890 REMARK 3 L13: 1.5658 L23: 4.3575 REMARK 3 S TENSOR REMARK 3 S11: 0.5346 S12: -0.4663 S13: -0.2335 REMARK 3 S21: 0.0220 S22: -0.7929 S23: 1.0669 REMARK 3 S31: 0.5199 S32: -1.2560 S33: 0.2583 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 173 A 184 REMARK 3 ORIGIN FOR THE GROUP (A): 23.7150 54.5280 9.8740 REMARK 3 T TENSOR REMARK 3 T11: 0.5964 T22: 1.4410 REMARK 3 T33: 1.4030 T12: 0.4875 REMARK 3 T13: -0.2355 T23: -0.3548 REMARK 3 L TENSOR REMARK 3 L11: 3.2868 L22: 7.1968 REMARK 3 L33: 7.1770 L12: 1.5799 REMARK 3 L13: 2.4316 L23: -2.9051 REMARK 3 S TENSOR REMARK 3 S11: 0.2213 S12: -0.2400 S13: 0.3123 REMARK 3 S21: -0.8840 S22: -0.6819 S23: 1.5614 REMARK 3 S31: 0.1447 S32: -1.4764 S33: 0.4606 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 185 A 204 REMARK 3 ORIGIN FOR THE GROUP (A): 38.8210 65.2020 15.5410 REMARK 3 T TENSOR REMARK 3 T11: 0.5500 T22: 0.5469 REMARK 3 T33: 0.8181 T12: 0.2659 REMARK 3 T13: 0.0479 T23: 0.0552 REMARK 3 L TENSOR REMARK 3 L11: 9.5263 L22: 6.2730 REMARK 3 L33: 5.4282 L12: 1.2144 REMARK 3 L13: 2.6328 L23: 2.7991 REMARK 3 S TENSOR REMARK 3 S11: 0.1234 S12: -0.0485 S13: 1.1785 REMARK 3 S21: -0.4976 S22: -0.2874 S23: 0.1333 REMARK 3 S31: -0.9136 S32: -0.4345 S33: 0.1639 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3F0C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-NOV-08. REMARK 100 THE DEPOSITION ID IS D_1000049986. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUN-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7695 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.950 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 8.400 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.60 REMARK 200 R MERGE FOR SHELL (I) : 0.59100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000, MLPHARE, SHELX, DM REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.0 AMMONIUM SULFATE, 0.1M HEPES, 0.5% REMARK 280 PAG 8000, PH 7.0 , VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 30.91133 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 15.45567 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 15.45567 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 30.91133 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: LIKELY-DIMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -55.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 46.36700 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 THR A 2 REMARK 465 ASP A 3 REMARK 465 ASN A 4 REMARK 465 LYS A 5 REMARK 465 ILE A 6 REMARK 465 LYS A 7 REMARK 465 ASN A 8 REMARK 465 GLU A 9 REMARK 465 PHE A 113 REMARK 465 HIS A 114 REMARK 465 ASN A 115 REMARK 465 GLU A 206 REMARK 465 VAL A 207 REMARK 465 ALA A 208 REMARK 465 SER A 209 REMARK 465 ARG A 210 REMARK 465 GLU A 211 REMARK 465 ASN A 212 REMARK 465 LEU A 213 REMARK 465 TYR A 214 REMARK 465 PHE A 215 REMARK 465 GLN A 216 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 108 CG CD1 CD2 REMARK 470 ARG A 109 CG CD NE CZ NH1 NH2 REMARK 470 PHE A 112 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 171 CG CD CE NZ REMARK 470 LYS A 175 CG CD CE NZ REMARK 470 GLU A 176 CG CD OE1 OE2 REMARK 470 ILE A 177 CG1 CG2 CD1 REMARK 470 ASN A 178 CG OD1 ND2 REMARK 470 ASP A 179 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MSE A 43 -153.81 -126.64 REMARK 500 LYS A 107 69.82 35.59 REMARK 500 LEU A 108 -149.91 -178.70 REMARK 500 PHE A 124 -70.01 -52.75 REMARK 500 LYS A 173 -60.57 67.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 217 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 218 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC88832 RELATED DB: TARGETDB DBREF 3F0C A 1 210 UNP Q11WJ7 Q11WJ7_CYTH3 1 210 SEQADV 3F0C GLU A 211 UNP Q11WJ7 EXPRESSION TAG SEQADV 3F0C ASN A 212 UNP Q11WJ7 EXPRESSION TAG SEQADV 3F0C LEU A 213 UNP Q11WJ7 EXPRESSION TAG SEQADV 3F0C TYR A 214 UNP Q11WJ7 EXPRESSION TAG SEQADV 3F0C PHE A 215 UNP Q11WJ7 EXPRESSION TAG SEQADV 3F0C GLN A 216 UNP Q11WJ7 EXPRESSION TAG SEQRES 1 A 216 MSE THR ASP ASN LYS ILE LYS ASN GLU ASP GLY LYS LEU SEQRES 2 A 216 GLU LEU ILE ILE ASN ALA ALA GLN LYS ARG PHE ALA HIS SEQRES 3 A 216 TYR GLY LEU CYS LYS THR THR MSE ASN GLU ILE ALA SER SEQRES 4 A 216 ASP VAL GLY MSE GLY LYS ALA SER LEU TYR TYR TYR PHE SEQRES 5 A 216 PRO ASP LYS GLU THR LEU PHE GLU ALA VAL ILE LYS LYS SEQRES 6 A 216 GLU GLN ASN VAL PHE PHE ASP GLU MSE ASP LYS ILE LEU SEQRES 7 A 216 ASN SER GLY ILE ASP ALA THR ALA LEU LEU LYS LYS TYR SEQRES 8 A 216 VAL LYS LEU ARG SER LEU HIS PHE ARG HIS LEU LEU ASN SEQRES 9 A 216 LEU SER LYS LEU ARG SER ASP PHE PHE HIS ASN THR LYS SEQRES 10 A 216 PRO VAL PHE ALA LYS ALA PHE GLU SER PHE LYS GLN LYS SEQRES 11 A 216 GLU VAL GLU ILE VAL ALA GLY ILE ILE GLN TYR GLY ILE SEQRES 12 A 216 THR THR LYS GLU PHE LYS ARG GLY ASN LYS HIS GLU ASN SEQRES 13 A 216 ALA GLU PHE LEU VAL HIS LEU LEU LEU GLY VAL ARG MSE SEQRES 14 A 216 VAL LYS LEU LYS TYR LYS GLU ILE ASN ASP PHE ASP GLU SEQRES 15 A 216 SER ASP TYR GLU ASP LEU ASP LYS ASN MSE CYS LYS VAL SEQRES 16 A 216 ALA GLY MSE PHE LEU LYS GLU ILE GLN THR GLU VAL ALA SEQRES 17 A 216 SER ARG GLU ASN LEU TYR PHE GLN MODRES 3F0C MSE A 34 MET SELENOMETHIONINE MODRES 3F0C MSE A 43 MET SELENOMETHIONINE MODRES 3F0C MSE A 74 MET SELENOMETHIONINE MODRES 3F0C MSE A 169 MET SELENOMETHIONINE MODRES 3F0C MSE A 192 MET SELENOMETHIONINE MODRES 3F0C MSE A 198 MET SELENOMETHIONINE HET MSE A 34 8 HET MSE A 43 8 HET MSE A 74 8 HET MSE A 169 8 HET MSE A 192 8 HET MSE A 198 8 HET SO4 A 217 5 HET SO4 A 218 5 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 2 SO4 2(O4 S 2-) HELIX 1 1 GLY A 11 GLY A 28 1 18 HELIX 2 2 THR A 33 GLY A 42 1 10 HELIX 3 3 GLY A 44 PHE A 52 1 9 HELIX 4 4 ASP A 54 ASN A 79 1 26 HELIX 5 5 ASP A 83 LYS A 107 1 25 HELIX 6 6 LYS A 117 THR A 145 1 29 HELIX 7 7 ASN A 152 LYS A 175 1 24 HELIX 8 8 GLU A 182 GLU A 202 1 21 LINK C THR A 33 N MSE A 34 1555 1555 1.31 LINK C MSE A 34 N ASN A 35 1555 1555 1.32 LINK C GLY A 42 N MSE A 43 1555 1555 1.32 LINK C MSE A 43 N GLY A 44 1555 1555 1.32 LINK C GLU A 73 N MSE A 74 1555 1555 1.34 LINK C MSE A 74 N ASP A 75 1555 1555 1.33 LINK C ARG A 168 N MSE A 169 1555 1555 1.32 LINK C MSE A 169 N VAL A 170 1555 1555 1.33 LINK C ASN A 191 N MSE A 192 1555 1555 1.33 LINK C MSE A 192 N CYS A 193 1555 1555 1.33 LINK C GLY A 197 N MSE A 198 1555 1555 1.32 LINK C MSE A 198 N PHE A 199 1555 1555 1.32 CISPEP 1 ARG A 150 GLY A 151 0 3.73 SITE 1 AC1 1 ARG A 23 SITE 1 AC2 6 THR A 33 MSE A 34 ASN A 35 LYS A 45 SITE 2 AC2 6 TYR A 49 LYS A 55 CRYST1 116.099 116.099 46.367 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008613 0.004973 0.000000 0.00000 SCALE2 0.000000 0.009946 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021567 0.00000