HEADER TRANSFERASE 24-OCT-08 3F0H TITLE CRYSTAL STRUCTURE OF AMINOTRANSFERASE (RER070207000802) FROM TITLE 2 EUBACTERIUM RECTALE AT 1.70 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMINOTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: EUBACTERIUM RECTALE; SOURCE 3 GENE: RER070207000802; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS RER070207000802, AMINOTRANSFERASE, STRUCTURAL GENOMICS, JOINT CENTER KEYWDS 2 FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, KEYWDS 3 AMINOTRANSFERASE CLASS-V, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 6 27-DEC-23 3F0H 1 REMARK REVDAT 5 24-JUL-19 3F0H 1 REMARK DBREF LINK REVDAT 4 25-OCT-17 3F0H 1 REMARK REVDAT 3 13-JUL-11 3F0H 1 VERSN REVDAT 2 24-FEB-09 3F0H 1 VERSN REVDAT 1 18-NOV-08 3F0H 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF AMINOTRANSFERASE (RER070207000802) FROM JRNL TITL 2 EUBACTERIUM RECTALE AT 1.70 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0053 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.62 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 49180 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.148 REMARK 3 R VALUE (WORKING SET) : 0.147 REMARK 3 FREE R VALUE : 0.167 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2495 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3317 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.35 REMARK 3 BIN R VALUE (WORKING SET) : 0.2600 REMARK 3 BIN FREE R VALUE SET COUNT : 199 REMARK 3 BIN FREE R VALUE : 0.2970 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2823 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 25 REMARK 3 SOLVENT ATOMS : 377 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 23.32 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.03000 REMARK 3 B22 (A**2) : 1.03000 REMARK 3 B33 (A**2) : -1.55000 REMARK 3 B12 (A**2) : 0.52000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.081 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.078 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.049 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.394 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.973 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.969 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3035 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2062 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4134 ; 1.430 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5090 ; 0.894 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 407 ; 5.812 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 135 ;37.679 ;25.111 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 548 ;11.938 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;18.020 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 466 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3399 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 591 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1871 ; 1.453 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 757 ; 0.451 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3052 ; 2.402 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1164 ; 4.023 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1058 ; 6.202 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -4 A 357 REMARK 3 ORIGIN FOR THE GROUP (A): 2.3974 42.6825 15.6357 REMARK 3 T TENSOR REMARK 3 T11: 0.0329 T22: 0.0072 REMARK 3 T33: 0.0075 T12: 0.0140 REMARK 3 T13: -0.0087 T23: -0.0061 REMARK 3 L TENSOR REMARK 3 L11: 0.2361 L22: 0.3718 REMARK 3 L33: 0.8271 L12: -0.1082 REMARK 3 L13: -0.0536 L23: 0.1946 REMARK 3 S TENSOR REMARK 3 S11: 0.0141 S12: 0.0025 S13: 0.0046 REMARK 3 S21: -0.0853 S22: -0.0362 S23: 0.0292 REMARK 3 S31: -0.1409 S32: -0.0578 S33: 0.0221 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY REMARK 3 OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 REMARK 3 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. REMARK 3 3. ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. REMARK 3 4. PLP IS COVALENTLY ATTACHED TO LYS187 (LLP). REMARK 3 RESIDUAL DENSITY SUGGESTS ADDITIONAL MOIETY REMARK 3 MAY BE ATTACHED TO THE C4A ATOM OF REMARK 3 PLP. THESE DENSITIES ARE MODELED AS AN UNKNOWN LIGAND (UNL). REMARK 3 5. GLYCEROL MODELED ARE PRESENT IN CRYO CONDITION. REMARK 4 REMARK 4 3F0H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-NOV-08. REMARK 100 THE DEPOSITION ID IS D_1000049991. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-OCT-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.94645,0.97966 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL REMARK 200 MONOCHROMETER REMARK 200 OPTICS : ADJUSTABLE FOCUSING MIRRORS IN K REMARK 200 -B GEOMETRY REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49360 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 29.617 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 20.28 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.5600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.29200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.790 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20.0000% PEG-6000, 0.1M BICINE PH 9.0, REMARK 280 NANODROP, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 124.53000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 249.06000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 186.79500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 311.32500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 62.26500 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 124.53000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 249.06000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 311.32500 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 186.79500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 62.26500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 -31.22500 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 54.08329 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 62.26500 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -18 REMARK 465 GLY A -17 REMARK 465 SER A -16 REMARK 465 ASP A -15 REMARK 465 LYS A -14 REMARK 465 ILE A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 GLU A -6 REMARK 465 ASN A -5 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 13 CD OE1 OE2 REMARK 470 LYS A 40 CD CE NZ REMARK 470 LYS A 76 CD CE NZ REMARK 470 LYS A 210 CD CE NZ REMARK 470 LYS A 225 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 61 O HOH A 640 2.13 REMARK 500 O HOH A 458 O HOH A 595 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 167 -2.37 73.37 REMARK 500 LLP A 187 -121.64 -96.50 REMARK 500 LYS A 212 60.55 -118.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL A 358 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 359 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 360 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 361 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 391588 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. DBREF 3F0H A -18 357 PDB 3F0H 3F0H -18 357 SEQRES 1 A 376 MSE GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS GLU SEQRES 2 A 376 ASN LEU TYR PHE GLN GLY MSE LEU ASN PHE THR VAL GLY SEQRES 3 A 376 PRO VAL MSE SER SER GLU GLU VAL ARG ALA ILE GLY ALA SEQRES 4 A 376 GLU GLN VAL PRO TYR PHE ARG THR THR GLU PHE SER SER SEQRES 5 A 376 THR MSE LEU GLU ASN GLU LYS PHE MSE LEU GLU TYR ALA SEQRES 6 A 376 LYS ALA PRO GLU GLY SER LYS ALA VAL PHE MSE THR CYS SEQRES 7 A 376 SER SER THR GLY SER MSE GLU ALA VAL VAL MSE ASN CYS SEQRES 8 A 376 PHE THR LYS LYS ASP LYS VAL LEU VAL ILE ASP GLY GLY SEQRES 9 A 376 SER PHE GLY HIS ARG PHE VAL GLN LEU CYS GLU ILE HIS SEQRES 10 A 376 GLU ILE PRO TYR VAL ALA LEU LYS LEU GLU HIS GLY LYS SEQRES 11 A 376 LYS LEU THR LYS GLU LYS LEU TYR GLU TYR ASP ASN GLN SEQRES 12 A 376 ASN PHE THR GLY LEU LEU VAL ASN VAL ASP GLU THR SER SEQRES 13 A 376 THR ALA VAL LEU TYR ASP THR MSE MSE ILE GLY GLU PHE SEQRES 14 A 376 CYS LYS LYS ASN ASN MSE PHE PHE VAL CYS ASP CYS VAL SEQRES 15 A 376 SER ALA PHE LEU ALA ASP PRO PHE ASN MSE ASN GLU CYS SEQRES 16 A 376 GLY ALA ASP VAL MSE ILE THR GLY SER GLN LLP VAL LEU SEQRES 17 A 376 ALA CYS PRO PRO GLY ILE SER VAL ILE VAL LEU ALA PRO SEQRES 18 A 376 ARG GLY VAL GLU ARG VAL GLU LYS SER LYS VAL ARG THR SEQRES 19 A 376 MSE TYR PHE ASP LEU LYS ASP ALA LEU LYS ASN GLN GLU SEQRES 20 A 376 ARG GLY GLN THR PRO PHE THR PRO ALA VAL GLY ILE LEU SEQRES 21 A 376 LEU GLN ILE ASN GLU ARG LEU LYS GLU ILE LYS LYS HIS SEQRES 22 A 376 GLY GLY ALA ASP ALA GLU VAL ALA ARG ILE ALA SER GLN SEQRES 23 A 376 ALA ALA ASP PHE ARG ALA LYS ILE LYS ASP LEU PRO PHE SEQRES 24 A 376 GLU LEU VAL SER GLU SER PRO ALA ASN GLY VAL THR SER SEQRES 25 A 376 VAL HIS PRO THR THR ALA ASN ALA TYR ASP ILE PHE LEU SEQRES 26 A 376 LYS LEU LYS ASP GLU TYR GLY ILE TRP ILE CYS PRO ASN SEQRES 27 A 376 GLY GLY GLU MSE LYS ASP THR ILE PHE ARG VAL GLY HIS SEQRES 28 A 376 ILE GLY ALA LEU THR HIS GLU ASP ASN THR THR LEU VAL SEQRES 29 A 376 ASN ALA PHE LYS ASP LEU GLN LYS ARG ASN LEU LEU MODRES 3F0H MSE A 1 MET SELENOMETHIONINE MODRES 3F0H MSE A 10 MET SELENOMETHIONINE MODRES 3F0H MSE A 35 MET SELENOMETHIONINE MODRES 3F0H MSE A 42 MET SELENOMETHIONINE MODRES 3F0H MSE A 57 MET SELENOMETHIONINE MODRES 3F0H MSE A 65 MET SELENOMETHIONINE MODRES 3F0H MSE A 70 MET SELENOMETHIONINE MODRES 3F0H MSE A 145 MET SELENOMETHIONINE MODRES 3F0H MSE A 146 MET SELENOMETHIONINE MODRES 3F0H MSE A 156 MET SELENOMETHIONINE MODRES 3F0H MSE A 173 MET SELENOMETHIONINE MODRES 3F0H MSE A 181 MET SELENOMETHIONINE MODRES 3F0H LLP A 187 LYS MODRES 3F0H MSE A 216 MET SELENOMETHIONINE MODRES 3F0H MSE A 323 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 10 8 HET MSE A 35 8 HET MSE A 42 8 HET MSE A 57 8 HET MSE A 65 8 HET MSE A 70 8 HET MSE A 145 8 HET MSE A 146 13 HET MSE A 156 8 HET MSE A 173 8 HET MSE A 181 8 HET LLP A 187 24 HET MSE A 216 8 HET MSE A 323 8 HET UNL A 358 7 HET GOL A 359 6 HET GOL A 360 8 HET GOL A 361 6 HETNAM MSE SELENOMETHIONINE HETNAM LLP (2S)-2-AMINO-6-[[3-HYDROXY-2-METHYL-5- HETNAM 2 LLP (PHOSPHONOOXYMETHYL)PYRIDIN-4- HETNAM 3 LLP YL]METHYLIDENEAMINO]HEXANOIC ACID HETNAM UNL UNKNOWN LIGAND HETNAM GOL GLYCEROL HETSYN LLP N'-PYRIDOXYL-LYSINE-5'-MONOPHOSPHATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 14(C5 H11 N O2 SE) FORMUL 1 LLP C14 H22 N3 O7 P FORMUL 3 GOL 3(C3 H8 O3) FORMUL 6 HOH *377(H2 O) HELIX 1 1 SER A 12 ALA A 20 1 9 HELIX 2 2 THR A 28 LYS A 47 1 20 HELIX 3 3 SER A 60 PHE A 73 1 14 HELIX 4 4 GLY A 85 HIS A 98 1 14 HELIX 5 5 THR A 114 GLU A 120 1 7 HELIX 6 6 ASP A 143 ASN A 154 1 12 HELIX 7 7 ASN A 172 GLY A 177 1 6 HELIX 8 8 ALA A 201 LYS A 210 1 10 HELIX 9 9 ASP A 219 GLU A 228 1 10 HELIX 10 10 ALA A 237 HIS A 254 1 18 HELIX 11 11 GLY A 255 ILE A 275 1 21 HELIX 12 12 ASN A 300 TYR A 312 1 13 HELIX 13 13 GLY A 320 LYS A 324 5 5 HELIX 14 14 THR A 337 ARG A 354 1 18 SHEET 1 A 2 LEU A 2 ASN A 3 0 SHEET 2 A 2 ILE A 314 TRP A 315 1 O TRP A 315 N LEU A 2 SHEET 1 B 7 LYS A 53 MSE A 57 0 SHEET 2 B 7 SER A 196 LEU A 200 -1 O LEU A 200 N LYS A 53 SHEET 3 B 7 VAL A 180 GLY A 184 -1 N MSE A 181 O VAL A 199 SHEET 4 B 7 PHE A 157 ASP A 161 1 N CYS A 160 O VAL A 180 SHEET 5 B 7 GLY A 128 ASN A 132 1 N VAL A 131 O ASP A 161 SHEET 6 B 7 VAL A 79 ASP A 83 1 N LEU A 80 O GLY A 128 SHEET 7 B 7 TYR A 102 LYS A 106 1 O LEU A 105 N VAL A 81 SHEET 1 C 4 PHE A 280 LEU A 282 0 SHEET 2 C 4 VAL A 291 PRO A 296 -1 O HIS A 295 N GLU A 281 SHEET 3 C 4 PHE A 328 GLY A 331 -1 O PHE A 328 N VAL A 294 SHEET 4 C 4 CYS A 317 PRO A 318 -1 N CYS A 317 O ARG A 329 LINK C GLY A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N LEU A 2 1555 1555 1.34 LINK C VAL A 9 N MSE A 10 1555 1555 1.33 LINK C MSE A 10 N SER A 11 1555 1555 1.34 LINK C THR A 34 N MSE A 35 1555 1555 1.33 LINK C MSE A 35 N LEU A 36 1555 1555 1.34 LINK C PHE A 41 N MSE A 42 1555 1555 1.34 LINK C MSE A 42 N LEU A 43 1555 1555 1.34 LINK C PHE A 56 N MSE A 57 1555 1555 1.33 LINK C MSE A 57 N THR A 58 1555 1555 1.32 LINK C SER A 64 N MSE A 65 1555 1555 1.32 LINK C MSE A 65 N GLU A 66 1555 1555 1.33 LINK C VAL A 69 N MSE A 70 1555 1555 1.33 LINK C MSE A 70 N ASN A 71 1555 1555 1.33 LINK C THR A 144 N MSE A 145 1555 1555 1.33 LINK C MSE A 145 N MSE A 146 1555 1555 1.33 LINK C MSE A 146 N ILE A 147 1555 1555 1.34 LINK C ASN A 155 N MSE A 156 1555 1555 1.34 LINK C MSE A 156 N PHE A 157 1555 1555 1.33 LINK C ASN A 172 N MSE A 173 1555 1555 1.33 LINK C MSE A 173 N ASN A 174 1555 1555 1.33 LINK C VAL A 180 N MSE A 181 1555 1555 1.35 LINK C MSE A 181 N ILE A 182 1555 1555 1.33 LINK C GLN A 186 N LLP A 187 1555 1555 1.33 LINK C LLP A 187 N VAL A 188 1555 1555 1.34 LINK C THR A 215 N MSE A 216 1555 1555 1.33 LINK C MSE A 216 N TYR A 217 1555 1555 1.33 LINK C GLU A 322 N MSE A 323 1555 1555 1.33 LINK C MSE A 323 N LYS A 324 1555 1555 1.33 CISPEP 1 GLY A 7 PRO A 8 0 -11.55 SITE 1 AC1 12 ARG A 27 SER A 86 PHE A 87 LLP A 187 SITE 2 AC1 12 ASN A 319 GLY A 320 MSE A 323 ARG A 329 SITE 3 AC1 12 HOH A 404 HOH A 484 HOH A 505 HOH A 691 SITE 1 AC2 5 ARG A 27 THR A 28 ARG A 229 HOH A 441 SITE 2 AC2 5 HOH A 599 SITE 1 AC3 9 VAL A 133 TYR A 142 ASP A 143 THR A 144 SITE 2 AC3 9 ASP A 169 PRO A 170 PHE A 171 HOH A 500 SITE 3 AC3 9 HOH A 730 SITE 1 AC4 9 GLU A 120 TYR A 121 GLN A 124 HIS A 295 SITE 2 AC4 9 ASP A 325 HOH A 457 HOH A 590 HOH A 621 SITE 3 AC4 9 HOH A 690 CRYST1 62.450 62.450 373.590 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016013 0.009245 0.000000 0.00000 SCALE2 0.000000 0.018490 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002677 0.00000