data_3F0Q # _entry.id 3F0Q # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.389 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3F0Q pdb_00003f0q 10.2210/pdb3f0q/pdb RCSB RCSB050000 ? ? WWPDB D_1000050000 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-10-06 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2013-11-27 4 'Structure model' 1 3 2023-12-27 5 'Structure model' 1 4 2024-04-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Non-polymer description' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' struct_site 5 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 4 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 5 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.entry_id 3F0Q _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2008-10-25 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3F0B ;Staphylococcus aureus dihydrofolate reductase complexed with NADPH and 2,4-Diamino-5-[3-(3-methoxy-5-phenylphenyl)but-1-ynyl]-6-methylpyrimidine ; unspecified PDB 3F0S ;Staphylococcus aureus dihydrofolate reductase complexed with NADPH and 2,4-Diamino-5-[3-(3-methoxy-5-(3,5-dimethylphenyl)phenyl)but-1-ynyl]-6-methylpyrimidine ; unspecified PDB 3F0U ;Staphylococcus aureus F98Y mutant dihydrofolate reductase complexed with NADPH and 2,4-Diamino-5-[3-(3-methoxy-5-phenylphenyl)but-1-ynyl]-6-methylpyrimidine ; unspecified PDB 3F0V ;Staphylococcus aureus F98Y mutant dihydrofolate reductase complexed with NADPH and 2,4-Diamino-5-[3-(3-methoxy-5-(2,6-dimethylphenyl)phenyl)but-1-ynyl]-6-methylpyrimidine ; unspecified PDB 3F0X ;Staphylococcus aureus F98Y mutant dihydrofolate reductase complexed with NADPH and 2,4-Diamino-5-[3-(3-methoxy-5-(3,5-dimethylphenyl)phenyl)but-1-ynyl]-6-methylpyrimidine ; unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Anderson, A.C.' 1 'Frey, K.M.' 2 'Liu, J.' 3 'Lombardo, M.N.' 4 # _citation.id primary _citation.title 'Predicting resistance mutations using protein design algorithms.' _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 107 _citation.page_first 13707 _citation.page_last 13712 _citation.year 2010 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20643959 _citation.pdbx_database_id_DOI 10.1073/pnas.1002162107 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Frey, K.M.' 1 ? primary 'Georgiev, I.' 2 ? primary 'Donald, B.R.' 3 ? primary 'Anderson, A.C.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Trimethoprim-sensitive dihydrofolate reductase' 18015.557 1 1.5.1.3 ? ? ? 2 non-polymer syn 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 745.421 1 ? ? ? ? 3 non-polymer syn "5-[(3S)-3-(5-methoxy-2',6'-dimethylbiphenyl-3-yl)but-1-yn-1-yl]-6-methylpyrimidine-2,4-diamine" 386.489 1 ? ? ? ? 4 water nat water 18.015 121 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;TLSILVAHDLQRVIGFENQLPWHLPNDLKHVKKLSTGHTLVMGRKTFESIGKPLPNRRNVVLTSDTSFNVEGVDVIHSIE DIYQLPGHVFIFGGQTLFEEMIDKVDDMYITVIEGKFRGDTFFPPYTFEDWEVASSVEGKLDEKNTIPHTFLHLIRK ; _entity_poly.pdbx_seq_one_letter_code_can ;TLSILVAHDLQRVIGFENQLPWHLPNDLKHVKKLSTGHTLVMGRKTFESIGKPLPNRRNVVLTSDTSFNVEGVDVIHSIE DIYQLPGHVFIFGGQTLFEEMIDKVDDMYITVIEGKFRGDTFFPPYTFEDWEVASSVEGKLDEKNTIPHTFLHLIRK ; _entity_poly.pdbx_strand_id X _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' NDP 3 "5-[(3S)-3-(5-methoxy-2',6'-dimethylbiphenyl-3-yl)but-1-yn-1-yl]-6-methylpyrimidine-2,4-diamine" 52V 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 THR n 1 2 LEU n 1 3 SER n 1 4 ILE n 1 5 LEU n 1 6 VAL n 1 7 ALA n 1 8 HIS n 1 9 ASP n 1 10 LEU n 1 11 GLN n 1 12 ARG n 1 13 VAL n 1 14 ILE n 1 15 GLY n 1 16 PHE n 1 17 GLU n 1 18 ASN n 1 19 GLN n 1 20 LEU n 1 21 PRO n 1 22 TRP n 1 23 HIS n 1 24 LEU n 1 25 PRO n 1 26 ASN n 1 27 ASP n 1 28 LEU n 1 29 LYS n 1 30 HIS n 1 31 VAL n 1 32 LYS n 1 33 LYS n 1 34 LEU n 1 35 SER n 1 36 THR n 1 37 GLY n 1 38 HIS n 1 39 THR n 1 40 LEU n 1 41 VAL n 1 42 MET n 1 43 GLY n 1 44 ARG n 1 45 LYS n 1 46 THR n 1 47 PHE n 1 48 GLU n 1 49 SER n 1 50 ILE n 1 51 GLY n 1 52 LYS n 1 53 PRO n 1 54 LEU n 1 55 PRO n 1 56 ASN n 1 57 ARG n 1 58 ARG n 1 59 ASN n 1 60 VAL n 1 61 VAL n 1 62 LEU n 1 63 THR n 1 64 SER n 1 65 ASP n 1 66 THR n 1 67 SER n 1 68 PHE n 1 69 ASN n 1 70 VAL n 1 71 GLU n 1 72 GLY n 1 73 VAL n 1 74 ASP n 1 75 VAL n 1 76 ILE n 1 77 HIS n 1 78 SER n 1 79 ILE n 1 80 GLU n 1 81 ASP n 1 82 ILE n 1 83 TYR n 1 84 GLN n 1 85 LEU n 1 86 PRO n 1 87 GLY n 1 88 HIS n 1 89 VAL n 1 90 PHE n 1 91 ILE n 1 92 PHE n 1 93 GLY n 1 94 GLY n 1 95 GLN n 1 96 THR n 1 97 LEU n 1 98 PHE n 1 99 GLU n 1 100 GLU n 1 101 MET n 1 102 ILE n 1 103 ASP n 1 104 LYS n 1 105 VAL n 1 106 ASP n 1 107 ASP n 1 108 MET n 1 109 TYR n 1 110 ILE n 1 111 THR n 1 112 VAL n 1 113 ILE n 1 114 GLU n 1 115 GLY n 1 116 LYS n 1 117 PHE n 1 118 ARG n 1 119 GLY n 1 120 ASP n 1 121 THR n 1 122 PHE n 1 123 PHE n 1 124 PRO n 1 125 PRO n 1 126 TYR n 1 127 THR n 1 128 PHE n 1 129 GLU n 1 130 ASP n 1 131 TRP n 1 132 GLU n 1 133 VAL n 1 134 ALA n 1 135 SER n 1 136 SER n 1 137 VAL n 1 138 GLU n 1 139 GLY n 1 140 LYS n 1 141 LEU n 1 142 ASP n 1 143 GLU n 1 144 LYS n 1 145 ASN n 1 146 THR n 1 147 ILE n 1 148 PRO n 1 149 HIS n 1 150 THR n 1 151 PHE n 1 152 LEU n 1 153 HIS n 1 154 LEU n 1 155 ILE n 1 156 ARG n 1 157 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene dfrB _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Staphylococcus aureus RF122' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 273036 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET41 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 52V non-polymer . "5-[(3S)-3-(5-methoxy-2',6'-dimethylbiphenyl-3-yl)but-1-yn-1-yl]-6-methylpyrimidine-2,4-diamine" ? 'C24 H26 N4 O' 386.489 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NDP non-polymer . 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' ? 'C21 H30 N7 O17 P3' 745.421 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 THR 1 1 1 THR THR X . n A 1 2 LEU 2 2 2 LEU LEU X . n A 1 3 SER 3 3 3 SER SER X . n A 1 4 ILE 4 4 4 ILE ILE X . n A 1 5 LEU 5 5 5 LEU LEU X . n A 1 6 VAL 6 6 6 VAL VAL X . n A 1 7 ALA 7 7 7 ALA ALA X . n A 1 8 HIS 8 8 8 HIS HIS X . n A 1 9 ASP 9 9 9 ASP ASP X . n A 1 10 LEU 10 10 10 LEU LEU X . n A 1 11 GLN 11 11 11 GLN GLN X . n A 1 12 ARG 12 12 12 ARG ARG X . n A 1 13 VAL 13 13 13 VAL VAL X . n A 1 14 ILE 14 14 14 ILE ILE X . n A 1 15 GLY 15 15 15 GLY GLY X . n A 1 16 PHE 16 16 16 PHE PHE X . n A 1 17 GLU 17 17 17 GLU GLU X . n A 1 18 ASN 18 18 18 ASN ASN X . n A 1 19 GLN 19 19 19 GLN GLN X . n A 1 20 LEU 20 20 20 LEU LEU X . n A 1 21 PRO 21 21 21 PRO PRO X . n A 1 22 TRP 22 22 22 TRP TRP X . n A 1 23 HIS 23 23 23 HIS HIS X . n A 1 24 LEU 24 24 24 LEU LEU X . n A 1 25 PRO 25 25 25 PRO PRO X . n A 1 26 ASN 26 26 26 ASN ASN X . n A 1 27 ASP 27 27 27 ASP ASP X . n A 1 28 LEU 28 28 28 LEU LEU X . n A 1 29 LYS 29 29 29 LYS LYS X . n A 1 30 HIS 30 30 30 HIS HIS X . n A 1 31 VAL 31 31 31 VAL VAL X . n A 1 32 LYS 32 32 32 LYS LYS X . n A 1 33 LYS 33 33 33 LYS LYS X . n A 1 34 LEU 34 34 34 LEU LEU X . n A 1 35 SER 35 35 35 SER SER X . n A 1 36 THR 36 36 36 THR THR X . n A 1 37 GLY 37 37 37 GLY GLY X . n A 1 38 HIS 38 38 38 HIS HIS X . n A 1 39 THR 39 39 39 THR THR X . n A 1 40 LEU 40 40 40 LEU LEU X . n A 1 41 VAL 41 41 41 VAL VAL X . n A 1 42 MET 42 42 42 MET MET X . n A 1 43 GLY 43 43 43 GLY GLY X . n A 1 44 ARG 44 44 44 ARG ARG X . n A 1 45 LYS 45 45 45 LYS LYS X . n A 1 46 THR 46 46 46 THR THR X . n A 1 47 PHE 47 47 47 PHE PHE X . n A 1 48 GLU 48 48 48 GLU GLU X . n A 1 49 SER 49 49 49 SER SER X . n A 1 50 ILE 50 50 50 ILE ILE X . n A 1 51 GLY 51 51 51 GLY GLY X . n A 1 52 LYS 52 52 52 LYS LYS X . n A 1 53 PRO 53 53 53 PRO PRO X . n A 1 54 LEU 54 54 54 LEU LEU X . n A 1 55 PRO 55 55 55 PRO PRO X . n A 1 56 ASN 56 56 56 ASN ASN X . n A 1 57 ARG 57 57 57 ARG ARG X . n A 1 58 ARG 58 58 58 ARG ARG X . n A 1 59 ASN 59 59 59 ASN ASN X . n A 1 60 VAL 60 60 60 VAL VAL X . n A 1 61 VAL 61 61 61 VAL VAL X . n A 1 62 LEU 62 62 62 LEU LEU X . n A 1 63 THR 63 63 63 THR THR X . n A 1 64 SER 64 64 64 SER SER X . n A 1 65 ASP 65 65 65 ASP ASP X . n A 1 66 THR 66 66 66 THR THR X . n A 1 67 SER 67 67 67 SER SER X . n A 1 68 PHE 68 68 68 PHE PHE X . n A 1 69 ASN 69 69 69 ASN ASN X . n A 1 70 VAL 70 70 70 VAL VAL X . n A 1 71 GLU 71 71 71 GLU GLU X . n A 1 72 GLY 72 72 72 GLY GLY X . n A 1 73 VAL 73 73 73 VAL VAL X . n A 1 74 ASP 74 74 74 ASP ASP X . n A 1 75 VAL 75 75 75 VAL VAL X . n A 1 76 ILE 76 76 76 ILE ILE X . n A 1 77 HIS 77 77 77 HIS HIS X . n A 1 78 SER 78 78 78 SER SER X . n A 1 79 ILE 79 79 79 ILE ILE X . n A 1 80 GLU 80 80 80 GLU GLU X . n A 1 81 ASP 81 81 81 ASP ASP X . n A 1 82 ILE 82 82 82 ILE ILE X . n A 1 83 TYR 83 83 83 TYR TYR X . n A 1 84 GLN 84 84 84 GLN GLN X . n A 1 85 LEU 85 85 85 LEU LEU X . n A 1 86 PRO 86 86 86 PRO PRO X . n A 1 87 GLY 87 87 87 GLY GLY X . n A 1 88 HIS 88 88 88 HIS HIS X . n A 1 89 VAL 89 89 89 VAL VAL X . n A 1 90 PHE 90 90 90 PHE PHE X . n A 1 91 ILE 91 91 91 ILE ILE X . n A 1 92 PHE 92 92 92 PHE PHE X . n A 1 93 GLY 93 93 93 GLY GLY X . n A 1 94 GLY 94 94 94 GLY GLY X . n A 1 95 GLN 95 95 95 GLN GLN X . n A 1 96 THR 96 96 96 THR THR X . n A 1 97 LEU 97 97 97 LEU LEU X . n A 1 98 PHE 98 98 98 PHE PHE X . n A 1 99 GLU 99 99 99 GLU GLU X . n A 1 100 GLU 100 100 100 GLU GLU X . n A 1 101 MET 101 101 101 MET MET X . n A 1 102 ILE 102 102 102 ILE ILE X . n A 1 103 ASP 103 103 103 ASP ASP X . n A 1 104 LYS 104 104 104 LYS LYS X . n A 1 105 VAL 105 105 105 VAL VAL X . n A 1 106 ASP 106 106 106 ASP ASP X . n A 1 107 ASP 107 107 107 ASP ASP X . n A 1 108 MET 108 108 108 MET MET X . n A 1 109 TYR 109 109 109 TYR TYR X . n A 1 110 ILE 110 110 110 ILE ILE X . n A 1 111 THR 111 111 111 THR THR X . n A 1 112 VAL 112 112 112 VAL VAL X . n A 1 113 ILE 113 113 113 ILE ILE X . n A 1 114 GLU 114 114 114 GLU GLU X . n A 1 115 GLY 115 115 115 GLY GLY X . n A 1 116 LYS 116 116 116 LYS LYS X . n A 1 117 PHE 117 117 117 PHE PHE X . n A 1 118 ARG 118 118 118 ARG ARG X . n A 1 119 GLY 119 119 119 GLY GLY X . n A 1 120 ASP 120 120 120 ASP ASP X . n A 1 121 THR 121 121 121 THR THR X . n A 1 122 PHE 122 122 122 PHE PHE X . n A 1 123 PHE 123 123 123 PHE PHE X . n A 1 124 PRO 124 124 124 PRO PRO X . n A 1 125 PRO 125 125 125 PRO PRO X . n A 1 126 TYR 126 126 126 TYR TYR X . n A 1 127 THR 127 127 127 THR THR X . n A 1 128 PHE 128 128 128 PHE PHE X . n A 1 129 GLU 129 129 129 GLU GLU X . n A 1 130 ASP 130 130 130 ASP ASP X . n A 1 131 TRP 131 131 131 TRP TRP X . n A 1 132 GLU 132 132 132 GLU GLU X . n A 1 133 VAL 133 133 133 VAL VAL X . n A 1 134 ALA 134 134 134 ALA ALA X . n A 1 135 SER 135 135 135 SER SER X . n A 1 136 SER 136 136 136 SER SER X . n A 1 137 VAL 137 137 137 VAL VAL X . n A 1 138 GLU 138 138 138 GLU GLU X . n A 1 139 GLY 139 139 139 GLY GLY X . n A 1 140 LYS 140 140 140 LYS LYS X . n A 1 141 LEU 141 141 141 LEU LEU X . n A 1 142 ASP 142 142 142 ASP ASP X . n A 1 143 GLU 143 143 143 GLU GLU X . n A 1 144 LYS 144 144 144 LYS LYS X . n A 1 145 ASN 145 145 145 ASN ASN X . n A 1 146 THR 146 146 146 THR THR X . n A 1 147 ILE 147 147 147 ILE ILE X . n A 1 148 PRO 148 148 148 PRO PRO X . n A 1 149 HIS 149 149 149 HIS HIS X . n A 1 150 THR 150 150 150 THR THR X . n A 1 151 PHE 151 151 151 PHE PHE X . n A 1 152 LEU 152 152 152 LEU LEU X . n A 1 153 HIS 153 153 153 HIS HIS X . n A 1 154 LEU 154 154 154 LEU LEU X . n A 1 155 ILE 155 155 155 ILE ILE X . n A 1 156 ARG 156 156 156 ARG ARG X . n A 1 157 LYS 157 157 157 LYS LYS X . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NDP 1 207 207 NDP NAP X . C 3 52V 1 158 1 52V 52V X . D 4 HOH 1 159 1 HOH HOH X . D 4 HOH 2 160 2 HOH HOH X . D 4 HOH 3 161 3 HOH HOH X . D 4 HOH 4 162 4 HOH HOH X . D 4 HOH 5 163 5 HOH HOH X . D 4 HOH 6 164 6 HOH HOH X . D 4 HOH 7 165 7 HOH HOH X . D 4 HOH 8 166 8 HOH HOH X . D 4 HOH 9 167 9 HOH HOH X . D 4 HOH 10 168 10 HOH HOH X . D 4 HOH 11 169 12 HOH HOH X . D 4 HOH 12 170 13 HOH HOH X . D 4 HOH 13 171 14 HOH HOH X . D 4 HOH 14 172 15 HOH HOH X . D 4 HOH 15 173 16 HOH HOH X . D 4 HOH 16 174 17 HOH HOH X . D 4 HOH 17 175 18 HOH HOH X . D 4 HOH 18 176 19 HOH HOH X . D 4 HOH 19 177 20 HOH HOH X . D 4 HOH 20 178 21 HOH HOH X . D 4 HOH 21 179 22 HOH HOH X . D 4 HOH 22 180 23 HOH HOH X . D 4 HOH 23 181 24 HOH HOH X . D 4 HOH 24 182 25 HOH HOH X . D 4 HOH 25 183 26 HOH HOH X . D 4 HOH 26 184 27 HOH HOH X . D 4 HOH 27 185 28 HOH HOH X . D 4 HOH 28 186 29 HOH HOH X . D 4 HOH 29 187 30 HOH HOH X . D 4 HOH 30 188 31 HOH HOH X . D 4 HOH 31 189 32 HOH HOH X . D 4 HOH 32 190 33 HOH HOH X . D 4 HOH 33 191 34 HOH HOH X . D 4 HOH 34 192 35 HOH HOH X . D 4 HOH 35 193 36 HOH HOH X . D 4 HOH 36 194 37 HOH HOH X . D 4 HOH 37 195 38 HOH HOH X . D 4 HOH 38 196 39 HOH HOH X . D 4 HOH 39 197 40 HOH HOH X . D 4 HOH 40 198 41 HOH HOH X . D 4 HOH 41 199 42 HOH HOH X . D 4 HOH 42 200 43 HOH HOH X . D 4 HOH 43 201 44 HOH HOH X . D 4 HOH 44 202 45 HOH HOH X . D 4 HOH 45 203 46 HOH HOH X . D 4 HOH 46 204 47 HOH HOH X . D 4 HOH 47 205 48 HOH HOH X . D 4 HOH 48 206 49 HOH HOH X . D 4 HOH 49 208 50 HOH HOH X . D 4 HOH 50 209 51 HOH HOH X . D 4 HOH 51 210 53 HOH HOH X . D 4 HOH 52 211 54 HOH HOH X . D 4 HOH 53 212 55 HOH HOH X . D 4 HOH 54 213 56 HOH HOH X . D 4 HOH 55 214 58 HOH HOH X . D 4 HOH 56 215 59 HOH HOH X . D 4 HOH 57 216 60 HOH HOH X . D 4 HOH 58 217 62 HOH HOH X . D 4 HOH 59 218 63 HOH HOH X . D 4 HOH 60 219 64 HOH HOH X . D 4 HOH 61 220 66 HOH HOH X . D 4 HOH 62 221 67 HOH HOH X . D 4 HOH 63 222 68 HOH HOH X . D 4 HOH 64 223 69 HOH HOH X . D 4 HOH 65 224 70 HOH HOH X . D 4 HOH 66 225 71 HOH HOH X . D 4 HOH 67 226 72 HOH HOH X . D 4 HOH 68 227 73 HOH HOH X . D 4 HOH 69 228 74 HOH HOH X . D 4 HOH 70 229 75 HOH HOH X . D 4 HOH 71 230 76 HOH HOH X . D 4 HOH 72 231 77 HOH HOH X . D 4 HOH 73 232 78 HOH HOH X . D 4 HOH 74 233 80 HOH HOH X . D 4 HOH 75 234 81 HOH HOH X . D 4 HOH 76 235 82 HOH HOH X . D 4 HOH 77 236 83 HOH HOH X . D 4 HOH 78 237 84 HOH HOH X . D 4 HOH 79 238 85 HOH HOH X . D 4 HOH 80 239 86 HOH HOH X . D 4 HOH 81 240 88 HOH HOH X . D 4 HOH 82 241 89 HOH HOH X . D 4 HOH 83 242 92 HOH HOH X . D 4 HOH 84 243 94 HOH HOH X . D 4 HOH 85 244 95 HOH HOH X . D 4 HOH 86 245 96 HOH HOH X . D 4 HOH 87 246 97 HOH HOH X . D 4 HOH 88 247 99 HOH HOH X . D 4 HOH 89 248 100 HOH HOH X . D 4 HOH 90 249 101 HOH HOH X . D 4 HOH 91 250 103 HOH HOH X . D 4 HOH 92 251 104 HOH HOH X . D 4 HOH 93 252 105 HOH HOH X . D 4 HOH 94 253 106 HOH HOH X . D 4 HOH 95 254 107 HOH HOH X . D 4 HOH 96 255 108 HOH HOH X . D 4 HOH 97 256 109 HOH HOH X . D 4 HOH 98 257 113 HOH HOH X . D 4 HOH 99 258 115 HOH HOH X . D 4 HOH 100 259 117 HOH HOH X . D 4 HOH 101 260 120 HOH HOH X . D 4 HOH 102 261 123 HOH HOH X . D 4 HOH 103 262 124 HOH HOH X . D 4 HOH 104 263 126 HOH HOH X . D 4 HOH 105 264 127 HOH HOH X . D 4 HOH 106 265 129 HOH HOH X . D 4 HOH 107 266 130 HOH HOH X . D 4 HOH 108 267 132 HOH HOH X . D 4 HOH 109 268 137 HOH HOH X . D 4 HOH 110 269 140 HOH HOH X . D 4 HOH 111 270 141 HOH HOH X . D 4 HOH 112 271 144 HOH HOH X . D 4 HOH 113 272 145 HOH HOH X . D 4 HOH 114 273 146 HOH HOH X . D 4 HOH 115 274 150 HOH HOH X . D 4 HOH 116 275 151 HOH HOH X . D 4 HOH 117 276 152 HOH HOH X . D 4 HOH 118 277 153 HOH HOH X . D 4 HOH 119 278 154 HOH HOH X . D 4 HOH 120 279 155 HOH HOH X . D 4 HOH 121 280 156 HOH HOH X . # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.2.0019 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 1 PDB_EXTRACT 3.006 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 2 CBASS . ? ? ? ? 'data collection' ? ? ? 3 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 4 SCALEPACK . ? ? ? ? 'data scaling' ? ? ? 5 Coot . ? ? ? ? 'model building' ? ? ? 6 # _cell.entry_id 3F0Q _cell.length_a 79.161 _cell.length_b 79.161 _cell.length_c 108.801 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3F0Q _symmetry.space_group_name_H-M 'P 61 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? # _exptl.crystals_number 1 _exptl.entry_id 3F0Q _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.73 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 54.96 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '15 % PEG 10000, 150 mM Sodium acetate, 100 mM MES pH 6.5, 5 % Butyrlactone, VAPOR DIFFUSION, HANGING DROP, temperature 277K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 77.2 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2008-06-20 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.080900 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X29A' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.080900 _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X29A # _reflns.entry_id 3F0Q _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I -3.00 _reflns.d_resolution_high 2.08 _reflns.d_resolution_low 25.92 _reflns.number_all 10908 _reflns.number_obs 10908 _reflns.percent_possible_obs 87.9 _reflns.pdbx_Rmerge_I_obs 0.050 _reflns.pdbx_Rsym_value 0.050 _reflns.pdbx_netI_over_sigmaI 8.6 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 10.4 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.08 _reflns_shell.d_res_low 2.29 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 95.3 _reflns_shell.Rmerge_I_obs 0.143 _reflns_shell.meanI_over_sigI_obs 2.7 _reflns_shell.pdbx_Rsym_value 0.143 _reflns_shell.pdbx_redundancy 12.2 _reflns_shell.number_unique_all 782 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3F0Q _refine.ls_d_res_high 2.080 _refine.ls_d_res_low 25.920 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 93.000 _refine.ls_number_reflns_obs 10908 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.ls_R_factor_obs 0.196 _refine.ls_R_factor_R_work 0.195 _refine.ls_R_factor_R_free 0.231 _refine.ls_percent_reflns_R_free 4.800 _refine.ls_number_reflns_R_free 548 _refine.B_iso_mean 20.644 _refine.aniso_B[1][1] -0.050 _refine.aniso_B[2][2] -0.050 _refine.aniso_B[3][3] 0.080 _refine.aniso_B[1][2] -0.030 _refine.aniso_B[1][3] -0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.943 _refine.correlation_coeff_Fo_to_Fc_free 0.922 _refine.pdbx_overall_ESU_R 0.231 _refine.pdbx_overall_ESU_R_Free 0.185 _refine.overall_SU_ML 0.123 _refine.overall_SU_B 4.570 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct 'FOURIER SYNTHESIS' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.B_iso_max 191.93 _refine.B_iso_min 6.56 _refine.occupancy_max 1.00 _refine.occupancy_min 0.50 _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all 10908 _refine.ls_R_factor_all 0.196 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model 'Sa F98Y DHFR bound to Folate and NADPH (Dale et al., J.Mol.Biol. 1997, structure not deposited in the PDB)' _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1273 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 77 _refine_hist.number_atoms_solvent 121 _refine_hist.number_atoms_total 1471 _refine_hist.d_res_high 2.080 _refine_hist.d_res_low 25.920 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1389 0.010 0.022 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1896 1.380 2.018 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 156 6.251 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 62 35.876 24.194 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 226 14.358 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 6 19.583 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 208 0.084 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1039 0.004 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 604 0.212 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 929 0.308 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 136 0.162 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 31 0.246 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 17 0.214 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 807 0.750 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1282 1.283 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 685 1.682 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 614 2.496 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 2.080 _refine_ls_shell.d_res_low 2.290 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 95.520 _refine_ls_shell.number_reflns_R_work 782 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.208 _refine_ls_shell.R_factor_R_free 0.276 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 49 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 831 _refine_ls_shell.number_reflns_obs 10908 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3F0Q _struct.title ;Staphylococcus aureus dihydrofolate reductase complexed with NADPH and 2,4-Diamino-5-[3-(3-methoxy-5-(2,6-dimethylphenyl)phenyl)but-1-ynyl]-6-methylpyrimidine ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3F0Q _struct_keywords.pdbx_keywords OXIDOREDUCTASE _struct_keywords.text oxidoreductase # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q2YY41_STAAB _struct_ref.pdbx_db_accession Q2YY41 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;TLSILVAHDLQRVIGFENQLPWHLPNDLKHVKKLSTGHTLVMGRKTFESIGKPLPNRRNVVLTSDTSFNVEGVDVIHSIE DIYQLPGHVFIFGGQTLFEEMIDKVDDMYITVIEGKFRGDTFFPPYTFEDWEVASSVEGKLDEKNTIPHTFLHLIRK ; _struct_ref.pdbx_align_begin 2 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3F0Q _struct_ref_seq.pdbx_strand_id X _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 157 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q2YY41 _struct_ref_seq.db_align_beg 2 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 158 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 157 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LEU A 24 ? THR A 36 ? LEU X 24 THR X 36 1 ? 13 HELX_P HELX_P2 2 ARG A 44 ? GLY A 51 ? ARG X 44 GLY X 51 1 ? 8 HELX_P HELX_P3 3 SER A 78 ? LEU A 85 ? SER X 78 LEU X 85 5 ? 8 HELX_P HELX_P4 4 GLY A 94 ? ILE A 102 ? GLY X 94 ILE X 102 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id GLY _struct_mon_prot_cis.label_seq_id 93 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id GLY _struct_mon_prot_cis.auth_seq_id 93 _struct_mon_prot_cis.auth_asym_id X _struct_mon_prot_cis.pdbx_label_comp_id_2 GLY _struct_mon_prot_cis.pdbx_label_seq_id_2 94 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 GLY _struct_mon_prot_cis.pdbx_auth_seq_id_2 94 _struct_mon_prot_cis.pdbx_auth_asym_id_2 X _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 3.26 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 8 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel A 6 7 ? anti-parallel A 7 8 ? anti-parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ASP A 74 ? ILE A 76 ? ASP X 74 ILE X 76 A 2 ARG A 58 ? LEU A 62 ? ARG X 58 LEU X 62 A 3 THR A 39 ? GLY A 43 ? THR X 39 GLY X 43 A 4 VAL A 89 ? GLY A 93 ? VAL X 89 GLY X 93 A 5 LEU A 2 ? ASP A 9 ? LEU X 2 ASP X 9 A 6 ASP A 107 ? ILE A 113 ? ASP X 107 ILE X 113 A 7 HIS A 149 ? ARG A 156 ? HIS X 149 ARG X 156 A 8 TRP A 131 ? GLU A 138 ? TRP X 131 GLU X 138 B 1 VAL A 13 ? GLY A 15 ? VAL X 13 GLY X 15 B 2 THR A 121 ? PHE A 122 ? THR X 121 PHE X 122 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ASP A 74 ? O ASP X 74 N VAL A 61 ? N VAL X 61 A 2 3 O VAL A 60 ? O VAL X 60 N LEU A 40 ? N LEU X 40 A 3 4 N VAL A 41 ? N VAL X 41 O PHE A 92 ? O PHE X 92 A 4 5 O ILE A 91 ? O ILE X 91 N SER A 3 ? N SER X 3 A 5 6 N ILE A 4 ? N ILE X 4 O TYR A 109 ? O TYR X 109 A 6 7 N ILE A 110 ? N ILE X 110 O LEU A 152 ? O LEU X 152 A 7 8 O ILE A 155 ? O ILE X 155 N GLU A 132 ? N GLU X 132 B 1 2 N ILE A 14 ? N ILE X 14 O THR A 121 ? O THR X 121 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software X NDP 207 ? 34 'BINDING SITE FOR RESIDUE NDP X 207' AC2 Software X 52V 158 ? 16 'BINDING SITE FOR RESIDUE 52V X 158' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 34 VAL A 6 ? VAL X 6 . ? 1_555 ? 2 AC1 34 ALA A 7 ? ALA X 7 . ? 1_555 ? 3 AC1 34 ILE A 14 ? ILE X 14 . ? 1_555 ? 4 AC1 34 GLY A 15 ? GLY X 15 . ? 1_555 ? 5 AC1 34 ASN A 18 ? ASN X 18 . ? 1_555 ? 6 AC1 34 GLN A 19 ? GLN X 19 . ? 1_555 ? 7 AC1 34 LEU A 20 ? LEU X 20 . ? 1_555 ? 8 AC1 34 GLY A 43 ? GLY X 43 . ? 1_555 ? 9 AC1 34 ARG A 44 ? ARG X 44 . ? 1_555 ? 10 AC1 34 LYS A 45 ? LYS X 45 . ? 1_555 ? 11 AC1 34 THR A 46 ? THR X 46 . ? 1_555 ? 12 AC1 34 LEU A 62 ? LEU X 62 . ? 1_555 ? 13 AC1 34 THR A 63 ? THR X 63 . ? 1_555 ? 14 AC1 34 SER A 64 ? SER X 64 . ? 1_555 ? 15 AC1 34 HIS A 77 ? HIS X 77 . ? 1_555 ? 16 AC1 34 ILE A 79 ? ILE X 79 . ? 1_555 ? 17 AC1 34 PHE A 92 ? PHE X 92 . ? 1_555 ? 18 AC1 34 GLY A 93 ? GLY X 93 . ? 1_555 ? 19 AC1 34 GLY A 94 ? GLY X 94 . ? 1_555 ? 20 AC1 34 GLN A 95 ? GLN X 95 . ? 1_555 ? 21 AC1 34 THR A 96 ? THR X 96 . ? 1_555 ? 22 AC1 34 LEU A 97 ? LEU X 97 . ? 1_555 ? 23 AC1 34 GLU A 100 ? GLU X 100 . ? 1_555 ? 24 AC1 34 THR A 121 ? THR X 121 . ? 1_555 ? 25 AC1 34 52V C . ? 52V X 158 . ? 1_555 ? 26 AC1 34 HOH D . ? HOH X 163 . ? 10_445 ? 27 AC1 34 HOH D . ? HOH X 177 . ? 1_555 ? 28 AC1 34 HOH D . ? HOH X 183 . ? 1_555 ? 29 AC1 34 HOH D . ? HOH X 193 . ? 1_555 ? 30 AC1 34 HOH D . ? HOH X 242 . ? 1_555 ? 31 AC1 34 HOH D . ? HOH X 251 . ? 1_555 ? 32 AC1 34 HOH D . ? HOH X 264 . ? 1_555 ? 33 AC1 34 HOH D . ? HOH X 267 . ? 1_555 ? 34 AC1 34 HOH D . ? HOH X 279 . ? 1_555 ? 35 AC2 16 LEU A 5 ? LEU X 5 . ? 1_555 ? 36 AC2 16 VAL A 6 ? VAL X 6 . ? 1_555 ? 37 AC2 16 ALA A 7 ? ALA X 7 . ? 1_555 ? 38 AC2 16 ASP A 27 ? ASP X 27 . ? 1_555 ? 39 AC2 16 VAL A 31 ? VAL X 31 . ? 1_555 ? 40 AC2 16 LYS A 32 ? LYS X 32 . ? 1_555 ? 41 AC2 16 MET A 42 ? MET X 42 . ? 1_555 ? 42 AC2 16 ILE A 50 ? ILE X 50 . ? 1_555 ? 43 AC2 16 LYS A 52 ? LYS X 52 . ? 1_555 ? 44 AC2 16 LEU A 54 ? LEU X 54 . ? 1_555 ? 45 AC2 16 PHE A 92 ? PHE X 92 . ? 1_555 ? 46 AC2 16 THR A 111 ? THR X 111 . ? 1_555 ? 47 AC2 16 HOH D . ? HOH X 159 . ? 1_555 ? 48 AC2 16 HOH D . ? HOH X 193 . ? 1_555 ? 49 AC2 16 NDP B . ? NDP X 207 . ? 1_555 ? 50 AC2 16 HOH D . ? HOH X 264 . ? 1_555 ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 HIS X 38 ? ? -120.82 -150.33 2 1 ASN X 56 ? ? 70.90 30.76 3 1 ASP X 142 ? ? -164.02 -160.38 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 52V C1 C Y N 1 52V C2 C N N 2 52V C3 C Y N 3 52V C6 C Y N 4 52V C12 C N R 5 52V C13 C N N 6 52V C14 C Y N 7 52V C15 C Y N 8 52V C16 C Y N 9 52V C17 C Y N 10 52V C18 C Y N 11 52V C26 C N N 12 52V C20 C Y N 13 52V C21 C Y N 14 52V C22 C Y N 15 52V C23 C Y N 16 52V C24 C Y N 17 52V C27 C N N 18 52V C25 C Y N 19 52V C19 C Y N 20 52V O17 O N N 21 52V C11 C N N 22 52V C10 C N N 23 52V C5 C Y N 24 52V C8 C N N 25 52V N4 N Y N 26 52V N7 N N N 27 52V N2 N Y N 28 52V N9 N N N 29 52V H2 H N N 30 52V H2A H N N 31 52V H2B H N N 32 52V H12 H N N 33 52V H13 H N N 34 52V H13A H N N 35 52V H13B H N N 36 52V H15 H N N 37 52V H17 H N N 38 52V H26 H N N 39 52V H26A H N N 40 52V H26B H N N 41 52V H21 H N N 42 52V H22 H N N 43 52V H23 H N N 44 52V H27 H N N 45 52V H27A H N N 46 52V H27B H N N 47 52V H19 H N N 48 52V H8 H N N 49 52V H8A H N N 50 52V H8B H N N 51 52V HN7 H N N 52 52V HN7A H N N 53 52V HN9 H N N 54 52V HN9A H N N 55 ALA N N N N 56 ALA CA C N S 57 ALA C C N N 58 ALA O O N N 59 ALA CB C N N 60 ALA OXT O N N 61 ALA H H N N 62 ALA H2 H N N 63 ALA HA H N N 64 ALA HB1 H N N 65 ALA HB2 H N N 66 ALA HB3 H N N 67 ALA HXT H N N 68 ARG N N N N 69 ARG CA C N S 70 ARG C C N N 71 ARG O O N N 72 ARG CB C N N 73 ARG CG C N N 74 ARG CD C N N 75 ARG NE N N N 76 ARG CZ C N N 77 ARG NH1 N N N 78 ARG NH2 N N N 79 ARG OXT O N N 80 ARG H H N N 81 ARG H2 H N N 82 ARG HA H N N 83 ARG HB2 H N N 84 ARG HB3 H N N 85 ARG HG2 H N N 86 ARG HG3 H N N 87 ARG HD2 H N N 88 ARG HD3 H N N 89 ARG HE H N N 90 ARG HH11 H N N 91 ARG HH12 H N N 92 ARG HH21 H N N 93 ARG HH22 H N N 94 ARG HXT H N N 95 ASN N N N N 96 ASN CA C N S 97 ASN C C N N 98 ASN O O N N 99 ASN CB C N N 100 ASN CG C N N 101 ASN OD1 O N N 102 ASN ND2 N N N 103 ASN OXT O N N 104 ASN H H N N 105 ASN H2 H N N 106 ASN HA H N N 107 ASN HB2 H N N 108 ASN HB3 H N N 109 ASN HD21 H N N 110 ASN HD22 H N N 111 ASN HXT H N N 112 ASP N N N N 113 ASP CA C N S 114 ASP C C N N 115 ASP O O N N 116 ASP CB C N N 117 ASP CG C N N 118 ASP OD1 O N N 119 ASP OD2 O N N 120 ASP OXT O N N 121 ASP H H N N 122 ASP H2 H N N 123 ASP HA H N N 124 ASP HB2 H N N 125 ASP HB3 H N N 126 ASP HD2 H N N 127 ASP HXT H N N 128 GLN N N N N 129 GLN CA C N S 130 GLN C C N N 131 GLN O O N N 132 GLN CB C N N 133 GLN CG C N N 134 GLN CD C N N 135 GLN OE1 O N N 136 GLN NE2 N N N 137 GLN OXT O N N 138 GLN H H N N 139 GLN H2 H N N 140 GLN HA H N N 141 GLN HB2 H N N 142 GLN HB3 H N N 143 GLN HG2 H N N 144 GLN HG3 H N N 145 GLN HE21 H N N 146 GLN HE22 H N N 147 GLN HXT H N N 148 GLU N N N N 149 GLU CA C N S 150 GLU C C N N 151 GLU O O N N 152 GLU CB C N N 153 GLU CG C N N 154 GLU CD C N N 155 GLU OE1 O N N 156 GLU OE2 O N N 157 GLU OXT O N N 158 GLU H H N N 159 GLU H2 H N N 160 GLU HA H N N 161 GLU HB2 H N N 162 GLU HB3 H N N 163 GLU HG2 H N N 164 GLU HG3 H N N 165 GLU HE2 H N N 166 GLU HXT H N N 167 GLY N N N N 168 GLY CA C N N 169 GLY C C N N 170 GLY O O N N 171 GLY OXT O N N 172 GLY H H N N 173 GLY H2 H N N 174 GLY HA2 H N N 175 GLY HA3 H N N 176 GLY HXT H N N 177 HIS N N N N 178 HIS CA C N S 179 HIS C C N N 180 HIS O O N N 181 HIS CB C N N 182 HIS CG C Y N 183 HIS ND1 N Y N 184 HIS CD2 C Y N 185 HIS CE1 C Y N 186 HIS NE2 N Y N 187 HIS OXT O N N 188 HIS H H N N 189 HIS H2 H N N 190 HIS HA H N N 191 HIS HB2 H N N 192 HIS HB3 H N N 193 HIS HD1 H N N 194 HIS HD2 H N N 195 HIS HE1 H N N 196 HIS HE2 H N N 197 HIS HXT H N N 198 HOH O O N N 199 HOH H1 H N N 200 HOH H2 H N N 201 ILE N N N N 202 ILE CA C N S 203 ILE C C N N 204 ILE O O N N 205 ILE CB C N S 206 ILE CG1 C N N 207 ILE CG2 C N N 208 ILE CD1 C N N 209 ILE OXT O N N 210 ILE H H N N 211 ILE H2 H N N 212 ILE HA H N N 213 ILE HB H N N 214 ILE HG12 H N N 215 ILE HG13 H N N 216 ILE HG21 H N N 217 ILE HG22 H N N 218 ILE HG23 H N N 219 ILE HD11 H N N 220 ILE HD12 H N N 221 ILE HD13 H N N 222 ILE HXT H N N 223 LEU N N N N 224 LEU CA C N S 225 LEU C C N N 226 LEU O O N N 227 LEU CB C N N 228 LEU CG C N N 229 LEU CD1 C N N 230 LEU CD2 C N N 231 LEU OXT O N N 232 LEU H H N N 233 LEU H2 H N N 234 LEU HA H N N 235 LEU HB2 H N N 236 LEU HB3 H N N 237 LEU HG H N N 238 LEU HD11 H N N 239 LEU HD12 H N N 240 LEU HD13 H N N 241 LEU HD21 H N N 242 LEU HD22 H N N 243 LEU HD23 H N N 244 LEU HXT H N N 245 LYS N N N N 246 LYS CA C N S 247 LYS C C N N 248 LYS O O N N 249 LYS CB C N N 250 LYS CG C N N 251 LYS CD C N N 252 LYS CE C N N 253 LYS NZ N N N 254 LYS OXT O N N 255 LYS H H N N 256 LYS H2 H N N 257 LYS HA H N N 258 LYS HB2 H N N 259 LYS HB3 H N N 260 LYS HG2 H N N 261 LYS HG3 H N N 262 LYS HD2 H N N 263 LYS HD3 H N N 264 LYS HE2 H N N 265 LYS HE3 H N N 266 LYS HZ1 H N N 267 LYS HZ2 H N N 268 LYS HZ3 H N N 269 LYS HXT H N N 270 MET N N N N 271 MET CA C N S 272 MET C C N N 273 MET O O N N 274 MET CB C N N 275 MET CG C N N 276 MET SD S N N 277 MET CE C N N 278 MET OXT O N N 279 MET H H N N 280 MET H2 H N N 281 MET HA H N N 282 MET HB2 H N N 283 MET HB3 H N N 284 MET HG2 H N N 285 MET HG3 H N N 286 MET HE1 H N N 287 MET HE2 H N N 288 MET HE3 H N N 289 MET HXT H N N 290 NDP PA P N S 291 NDP O1A O N N 292 NDP O2A O N N 293 NDP O5B O N N 294 NDP C5B C N N 295 NDP C4B C N R 296 NDP O4B O N N 297 NDP C3B C N R 298 NDP O3B O N N 299 NDP C2B C N R 300 NDP O2B O N N 301 NDP C1B C N R 302 NDP N9A N Y N 303 NDP C8A C Y N 304 NDP N7A N Y N 305 NDP C5A C Y N 306 NDP C6A C Y N 307 NDP N6A N N N 308 NDP N1A N Y N 309 NDP C2A C Y N 310 NDP N3A N Y N 311 NDP C4A C Y N 312 NDP O3 O N N 313 NDP PN P N S 314 NDP O1N O N N 315 NDP O2N O N N 316 NDP O5D O N N 317 NDP C5D C N N 318 NDP C4D C N R 319 NDP O4D O N N 320 NDP C3D C N S 321 NDP O3D O N N 322 NDP C2D C N R 323 NDP O2D O N N 324 NDP C1D C N R 325 NDP N1N N N N 326 NDP C2N C N N 327 NDP C3N C N N 328 NDP C7N C N N 329 NDP O7N O N N 330 NDP N7N N N N 331 NDP C4N C N N 332 NDP C5N C N N 333 NDP C6N C N N 334 NDP P2B P N N 335 NDP O1X O N N 336 NDP O2X O N N 337 NDP O3X O N N 338 NDP HOA2 H N N 339 NDP H51A H N N 340 NDP H52A H N N 341 NDP H4B H N N 342 NDP H3B H N N 343 NDP HO3A H N N 344 NDP H2B H N N 345 NDP H1B H N N 346 NDP H8A H N N 347 NDP H61A H N N 348 NDP H62A H N N 349 NDP H2A H N N 350 NDP H21N H N N 351 NDP H51N H N N 352 NDP H52N H N N 353 NDP H4D H N N 354 NDP H3D H N N 355 NDP HO3N H N N 356 NDP H2D H N N 357 NDP HO2N H N N 358 NDP H1D H N N 359 NDP H2N H N N 360 NDP H71N H N N 361 NDP H72N H N N 362 NDP H41N H N N 363 NDP H42N H N N 364 NDP H5N H N N 365 NDP H6N H N N 366 NDP HOP2 H N N 367 NDP HOP3 H N N 368 PHE N N N N 369 PHE CA C N S 370 PHE C C N N 371 PHE O O N N 372 PHE CB C N N 373 PHE CG C Y N 374 PHE CD1 C Y N 375 PHE CD2 C Y N 376 PHE CE1 C Y N 377 PHE CE2 C Y N 378 PHE CZ C Y N 379 PHE OXT O N N 380 PHE H H N N 381 PHE H2 H N N 382 PHE HA H N N 383 PHE HB2 H N N 384 PHE HB3 H N N 385 PHE HD1 H N N 386 PHE HD2 H N N 387 PHE HE1 H N N 388 PHE HE2 H N N 389 PHE HZ H N N 390 PHE HXT H N N 391 PRO N N N N 392 PRO CA C N S 393 PRO C C N N 394 PRO O O N N 395 PRO CB C N N 396 PRO CG C N N 397 PRO CD C N N 398 PRO OXT O N N 399 PRO H H N N 400 PRO HA H N N 401 PRO HB2 H N N 402 PRO HB3 H N N 403 PRO HG2 H N N 404 PRO HG3 H N N 405 PRO HD2 H N N 406 PRO HD3 H N N 407 PRO HXT H N N 408 SER N N N N 409 SER CA C N S 410 SER C C N N 411 SER O O N N 412 SER CB C N N 413 SER OG O N N 414 SER OXT O N N 415 SER H H N N 416 SER H2 H N N 417 SER HA H N N 418 SER HB2 H N N 419 SER HB3 H N N 420 SER HG H N N 421 SER HXT H N N 422 THR N N N N 423 THR CA C N S 424 THR C C N N 425 THR O O N N 426 THR CB C N R 427 THR OG1 O N N 428 THR CG2 C N N 429 THR OXT O N N 430 THR H H N N 431 THR H2 H N N 432 THR HA H N N 433 THR HB H N N 434 THR HG1 H N N 435 THR HG21 H N N 436 THR HG22 H N N 437 THR HG23 H N N 438 THR HXT H N N 439 TRP N N N N 440 TRP CA C N S 441 TRP C C N N 442 TRP O O N N 443 TRP CB C N N 444 TRP CG C Y N 445 TRP CD1 C Y N 446 TRP CD2 C Y N 447 TRP NE1 N Y N 448 TRP CE2 C Y N 449 TRP CE3 C Y N 450 TRP CZ2 C Y N 451 TRP CZ3 C Y N 452 TRP CH2 C Y N 453 TRP OXT O N N 454 TRP H H N N 455 TRP H2 H N N 456 TRP HA H N N 457 TRP HB2 H N N 458 TRP HB3 H N N 459 TRP HD1 H N N 460 TRP HE1 H N N 461 TRP HE3 H N N 462 TRP HZ2 H N N 463 TRP HZ3 H N N 464 TRP HH2 H N N 465 TRP HXT H N N 466 TYR N N N N 467 TYR CA C N S 468 TYR C C N N 469 TYR O O N N 470 TYR CB C N N 471 TYR CG C Y N 472 TYR CD1 C Y N 473 TYR CD2 C Y N 474 TYR CE1 C Y N 475 TYR CE2 C Y N 476 TYR CZ C Y N 477 TYR OH O N N 478 TYR OXT O N N 479 TYR H H N N 480 TYR H2 H N N 481 TYR HA H N N 482 TYR HB2 H N N 483 TYR HB3 H N N 484 TYR HD1 H N N 485 TYR HD2 H N N 486 TYR HE1 H N N 487 TYR HE2 H N N 488 TYR HH H N N 489 TYR HXT H N N 490 VAL N N N N 491 VAL CA C N S 492 VAL C C N N 493 VAL O O N N 494 VAL CB C N N 495 VAL CG1 C N N 496 VAL CG2 C N N 497 VAL OXT O N N 498 VAL H H N N 499 VAL H2 H N N 500 VAL HA H N N 501 VAL HB H N N 502 VAL HG11 H N N 503 VAL HG12 H N N 504 VAL HG13 H N N 505 VAL HG21 H N N 506 VAL HG22 H N N 507 VAL HG23 H N N 508 VAL HXT H N N 509 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 52V N9 C1 sing N N 1 52V N2 C1 doub Y N 2 52V C1 C6 sing Y N 3 52V C2 O17 sing N N 4 52V C2 H2 sing N N 5 52V C2 H2A sing N N 6 52V C2 H2B sing N N 7 52V N2 C3 sing Y N 8 52V N7 C3 sing N N 9 52V C3 N4 doub Y N 10 52V C6 C10 sing N N 11 52V C6 C5 doub Y N 12 52V C14 C12 sing N N 13 52V C11 C12 sing N N 14 52V C12 C13 sing N N 15 52V C12 H12 sing N N 16 52V C13 H13 sing N N 17 52V C13 H13A sing N N 18 52V C13 H13B sing N N 19 52V C15 C14 doub Y N 20 52V C14 C19 sing Y N 21 52V C16 C15 sing Y N 22 52V C15 H15 sing N N 23 52V O17 C16 sing N N 24 52V C16 C17 doub Y N 25 52V C17 C18 sing Y N 26 52V C17 H17 sing N N 27 52V C18 C25 sing Y N 28 52V C18 C19 doub Y N 29 52V C20 C26 sing N N 30 52V C26 H26 sing N N 31 52V C26 H26A sing N N 32 52V C26 H26B sing N N 33 52V C25 C20 doub Y N 34 52V C20 C21 sing Y N 35 52V C22 C21 doub Y N 36 52V C21 H21 sing N N 37 52V C23 C22 sing Y N 38 52V C22 H22 sing N N 39 52V C24 C23 doub Y N 40 52V C23 H23 sing N N 41 52V C27 C24 sing N N 42 52V C24 C25 sing Y N 43 52V C27 H27 sing N N 44 52V C27 H27A sing N N 45 52V C27 H27B sing N N 46 52V C19 H19 sing N N 47 52V C10 C11 trip N N 48 52V N4 C5 sing Y N 49 52V C5 C8 sing N N 50 52V C8 H8 sing N N 51 52V C8 H8A sing N N 52 52V C8 H8B sing N N 53 52V N7 HN7 sing N N 54 52V N7 HN7A sing N N 55 52V N9 HN9 sing N N 56 52V N9 HN9A sing N N 57 ALA N CA sing N N 58 ALA N H sing N N 59 ALA N H2 sing N N 60 ALA CA C sing N N 61 ALA CA CB sing N N 62 ALA CA HA sing N N 63 ALA C O doub N N 64 ALA C OXT sing N N 65 ALA CB HB1 sing N N 66 ALA CB HB2 sing N N 67 ALA CB HB3 sing N N 68 ALA OXT HXT sing N N 69 ARG N CA sing N N 70 ARG N H sing N N 71 ARG N H2 sing N N 72 ARG CA C sing N N 73 ARG CA CB sing N N 74 ARG CA HA sing N N 75 ARG C O doub N N 76 ARG C OXT sing N N 77 ARG CB CG sing N N 78 ARG CB HB2 sing N N 79 ARG CB HB3 sing N N 80 ARG CG CD sing N N 81 ARG CG HG2 sing N N 82 ARG CG HG3 sing N N 83 ARG CD NE sing N N 84 ARG CD HD2 sing N N 85 ARG CD HD3 sing N N 86 ARG NE CZ sing N N 87 ARG NE HE sing N N 88 ARG CZ NH1 sing N N 89 ARG CZ NH2 doub N N 90 ARG NH1 HH11 sing N N 91 ARG NH1 HH12 sing N N 92 ARG NH2 HH21 sing N N 93 ARG NH2 HH22 sing N N 94 ARG OXT HXT sing N N 95 ASN N CA sing N N 96 ASN N H sing N N 97 ASN N H2 sing N N 98 ASN CA C sing N N 99 ASN CA CB sing N N 100 ASN CA HA sing N N 101 ASN C O doub N N 102 ASN C OXT sing N N 103 ASN CB CG sing N N 104 ASN CB HB2 sing N N 105 ASN CB HB3 sing N N 106 ASN CG OD1 doub N N 107 ASN CG ND2 sing N N 108 ASN ND2 HD21 sing N N 109 ASN ND2 HD22 sing N N 110 ASN OXT HXT sing N N 111 ASP N CA sing N N 112 ASP N H sing N N 113 ASP N H2 sing N N 114 ASP CA C sing N N 115 ASP CA CB sing N N 116 ASP CA HA sing N N 117 ASP C O doub N N 118 ASP C OXT sing N N 119 ASP CB CG sing N N 120 ASP CB HB2 sing N N 121 ASP CB HB3 sing N N 122 ASP CG OD1 doub N N 123 ASP CG OD2 sing N N 124 ASP OD2 HD2 sing N N 125 ASP OXT HXT sing N N 126 GLN N CA sing N N 127 GLN N H sing N N 128 GLN N H2 sing N N 129 GLN CA C sing N N 130 GLN CA CB sing N N 131 GLN CA HA sing N N 132 GLN C O doub N N 133 GLN C OXT sing N N 134 GLN CB CG sing N N 135 GLN CB HB2 sing N N 136 GLN CB HB3 sing N N 137 GLN CG CD sing N N 138 GLN CG HG2 sing N N 139 GLN CG HG3 sing N N 140 GLN CD OE1 doub N N 141 GLN CD NE2 sing N N 142 GLN NE2 HE21 sing N N 143 GLN NE2 HE22 sing N N 144 GLN OXT HXT sing N N 145 GLU N CA sing N N 146 GLU N H sing N N 147 GLU N H2 sing N N 148 GLU CA C sing N N 149 GLU CA CB sing N N 150 GLU CA HA sing N N 151 GLU C O doub N N 152 GLU C OXT sing N N 153 GLU CB CG sing N N 154 GLU CB HB2 sing N N 155 GLU CB HB3 sing N N 156 GLU CG CD sing N N 157 GLU CG HG2 sing N N 158 GLU CG HG3 sing N N 159 GLU CD OE1 doub N N 160 GLU CD OE2 sing N N 161 GLU OE2 HE2 sing N N 162 GLU OXT HXT sing N N 163 GLY N CA sing N N 164 GLY N H sing N N 165 GLY N H2 sing N N 166 GLY CA C sing N N 167 GLY CA HA2 sing N N 168 GLY CA HA3 sing N N 169 GLY C O doub N N 170 GLY C OXT sing N N 171 GLY OXT HXT sing N N 172 HIS N CA sing N N 173 HIS N H sing N N 174 HIS N H2 sing N N 175 HIS CA C sing N N 176 HIS CA CB sing N N 177 HIS CA HA sing N N 178 HIS C O doub N N 179 HIS C OXT sing N N 180 HIS CB CG sing N N 181 HIS CB HB2 sing N N 182 HIS CB HB3 sing N N 183 HIS CG ND1 sing Y N 184 HIS CG CD2 doub Y N 185 HIS ND1 CE1 doub Y N 186 HIS ND1 HD1 sing N N 187 HIS CD2 NE2 sing Y N 188 HIS CD2 HD2 sing N N 189 HIS CE1 NE2 sing Y N 190 HIS CE1 HE1 sing N N 191 HIS NE2 HE2 sing N N 192 HIS OXT HXT sing N N 193 HOH O H1 sing N N 194 HOH O H2 sing N N 195 ILE N CA sing N N 196 ILE N H sing N N 197 ILE N H2 sing N N 198 ILE CA C sing N N 199 ILE CA CB sing N N 200 ILE CA HA sing N N 201 ILE C O doub N N 202 ILE C OXT sing N N 203 ILE CB CG1 sing N N 204 ILE CB CG2 sing N N 205 ILE CB HB sing N N 206 ILE CG1 CD1 sing N N 207 ILE CG1 HG12 sing N N 208 ILE CG1 HG13 sing N N 209 ILE CG2 HG21 sing N N 210 ILE CG2 HG22 sing N N 211 ILE CG2 HG23 sing N N 212 ILE CD1 HD11 sing N N 213 ILE CD1 HD12 sing N N 214 ILE CD1 HD13 sing N N 215 ILE OXT HXT sing N N 216 LEU N CA sing N N 217 LEU N H sing N N 218 LEU N H2 sing N N 219 LEU CA C sing N N 220 LEU CA CB sing N N 221 LEU CA HA sing N N 222 LEU C O doub N N 223 LEU C OXT sing N N 224 LEU CB CG sing N N 225 LEU CB HB2 sing N N 226 LEU CB HB3 sing N N 227 LEU CG CD1 sing N N 228 LEU CG CD2 sing N N 229 LEU CG HG sing N N 230 LEU CD1 HD11 sing N N 231 LEU CD1 HD12 sing N N 232 LEU CD1 HD13 sing N N 233 LEU CD2 HD21 sing N N 234 LEU CD2 HD22 sing N N 235 LEU CD2 HD23 sing N N 236 LEU OXT HXT sing N N 237 LYS N CA sing N N 238 LYS N H sing N N 239 LYS N H2 sing N N 240 LYS CA C sing N N 241 LYS CA CB sing N N 242 LYS CA HA sing N N 243 LYS C O doub N N 244 LYS C OXT sing N N 245 LYS CB CG sing N N 246 LYS CB HB2 sing N N 247 LYS CB HB3 sing N N 248 LYS CG CD sing N N 249 LYS CG HG2 sing N N 250 LYS CG HG3 sing N N 251 LYS CD CE sing N N 252 LYS CD HD2 sing N N 253 LYS CD HD3 sing N N 254 LYS CE NZ sing N N 255 LYS CE HE2 sing N N 256 LYS CE HE3 sing N N 257 LYS NZ HZ1 sing N N 258 LYS NZ HZ2 sing N N 259 LYS NZ HZ3 sing N N 260 LYS OXT HXT sing N N 261 MET N CA sing N N 262 MET N H sing N N 263 MET N H2 sing N N 264 MET CA C sing N N 265 MET CA CB sing N N 266 MET CA HA sing N N 267 MET C O doub N N 268 MET C OXT sing N N 269 MET CB CG sing N N 270 MET CB HB2 sing N N 271 MET CB HB3 sing N N 272 MET CG SD sing N N 273 MET CG HG2 sing N N 274 MET CG HG3 sing N N 275 MET SD CE sing N N 276 MET CE HE1 sing N N 277 MET CE HE2 sing N N 278 MET CE HE3 sing N N 279 MET OXT HXT sing N N 280 NDP PA O1A doub N N 281 NDP PA O2A sing N N 282 NDP PA O5B sing N N 283 NDP PA O3 sing N N 284 NDP O2A HOA2 sing N N 285 NDP O5B C5B sing N N 286 NDP C5B C4B sing N N 287 NDP C5B H51A sing N N 288 NDP C5B H52A sing N N 289 NDP C4B O4B sing N N 290 NDP C4B C3B sing N N 291 NDP C4B H4B sing N N 292 NDP O4B C1B sing N N 293 NDP C3B O3B sing N N 294 NDP C3B C2B sing N N 295 NDP C3B H3B sing N N 296 NDP O3B HO3A sing N N 297 NDP C2B O2B sing N N 298 NDP C2B C1B sing N N 299 NDP C2B H2B sing N N 300 NDP O2B P2B sing N N 301 NDP C1B N9A sing N N 302 NDP C1B H1B sing N N 303 NDP N9A C8A sing Y N 304 NDP N9A C4A sing Y N 305 NDP C8A N7A doub Y N 306 NDP C8A H8A sing N N 307 NDP N7A C5A sing Y N 308 NDP C5A C6A sing Y N 309 NDP C5A C4A doub Y N 310 NDP C6A N6A sing N N 311 NDP C6A N1A doub Y N 312 NDP N6A H61A sing N N 313 NDP N6A H62A sing N N 314 NDP N1A C2A sing Y N 315 NDP C2A N3A doub Y N 316 NDP C2A H2A sing N N 317 NDP N3A C4A sing Y N 318 NDP O3 PN sing N N 319 NDP PN O1N doub N N 320 NDP PN O2N sing N N 321 NDP PN O5D sing N N 322 NDP O2N H21N sing N N 323 NDP O5D C5D sing N N 324 NDP C5D C4D sing N N 325 NDP C5D H51N sing N N 326 NDP C5D H52N sing N N 327 NDP C4D O4D sing N N 328 NDP C4D C3D sing N N 329 NDP C4D H4D sing N N 330 NDP O4D C1D sing N N 331 NDP C3D O3D sing N N 332 NDP C3D C2D sing N N 333 NDP C3D H3D sing N N 334 NDP O3D HO3N sing N N 335 NDP C2D O2D sing N N 336 NDP C2D C1D sing N N 337 NDP C2D H2D sing N N 338 NDP O2D HO2N sing N N 339 NDP C1D N1N sing N N 340 NDP C1D H1D sing N N 341 NDP N1N C2N sing N N 342 NDP N1N C6N sing N N 343 NDP C2N C3N doub N N 344 NDP C2N H2N sing N N 345 NDP C3N C7N sing N N 346 NDP C3N C4N sing N N 347 NDP C7N O7N doub N N 348 NDP C7N N7N sing N N 349 NDP N7N H71N sing N N 350 NDP N7N H72N sing N N 351 NDP C4N C5N sing N N 352 NDP C4N H41N sing N N 353 NDP C4N H42N sing N N 354 NDP C5N C6N doub N N 355 NDP C5N H5N sing N N 356 NDP C6N H6N sing N N 357 NDP P2B O1X doub N N 358 NDP P2B O2X sing N N 359 NDP P2B O3X sing N N 360 NDP O2X HOP2 sing N N 361 NDP O3X HOP3 sing N N 362 PHE N CA sing N N 363 PHE N H sing N N 364 PHE N H2 sing N N 365 PHE CA C sing N N 366 PHE CA CB sing N N 367 PHE CA HA sing N N 368 PHE C O doub N N 369 PHE C OXT sing N N 370 PHE CB CG sing N N 371 PHE CB HB2 sing N N 372 PHE CB HB3 sing N N 373 PHE CG CD1 doub Y N 374 PHE CG CD2 sing Y N 375 PHE CD1 CE1 sing Y N 376 PHE CD1 HD1 sing N N 377 PHE CD2 CE2 doub Y N 378 PHE CD2 HD2 sing N N 379 PHE CE1 CZ doub Y N 380 PHE CE1 HE1 sing N N 381 PHE CE2 CZ sing Y N 382 PHE CE2 HE2 sing N N 383 PHE CZ HZ sing N N 384 PHE OXT HXT sing N N 385 PRO N CA sing N N 386 PRO N CD sing N N 387 PRO N H sing N N 388 PRO CA C sing N N 389 PRO CA CB sing N N 390 PRO CA HA sing N N 391 PRO C O doub N N 392 PRO C OXT sing N N 393 PRO CB CG sing N N 394 PRO CB HB2 sing N N 395 PRO CB HB3 sing N N 396 PRO CG CD sing N N 397 PRO CG HG2 sing N N 398 PRO CG HG3 sing N N 399 PRO CD HD2 sing N N 400 PRO CD HD3 sing N N 401 PRO OXT HXT sing N N 402 SER N CA sing N N 403 SER N H sing N N 404 SER N H2 sing N N 405 SER CA C sing N N 406 SER CA CB sing N N 407 SER CA HA sing N N 408 SER C O doub N N 409 SER C OXT sing N N 410 SER CB OG sing N N 411 SER CB HB2 sing N N 412 SER CB HB3 sing N N 413 SER OG HG sing N N 414 SER OXT HXT sing N N 415 THR N CA sing N N 416 THR N H sing N N 417 THR N H2 sing N N 418 THR CA C sing N N 419 THR CA CB sing N N 420 THR CA HA sing N N 421 THR C O doub N N 422 THR C OXT sing N N 423 THR CB OG1 sing N N 424 THR CB CG2 sing N N 425 THR CB HB sing N N 426 THR OG1 HG1 sing N N 427 THR CG2 HG21 sing N N 428 THR CG2 HG22 sing N N 429 THR CG2 HG23 sing N N 430 THR OXT HXT sing N N 431 TRP N CA sing N N 432 TRP N H sing N N 433 TRP N H2 sing N N 434 TRP CA C sing N N 435 TRP CA CB sing N N 436 TRP CA HA sing N N 437 TRP C O doub N N 438 TRP C OXT sing N N 439 TRP CB CG sing N N 440 TRP CB HB2 sing N N 441 TRP CB HB3 sing N N 442 TRP CG CD1 doub Y N 443 TRP CG CD2 sing Y N 444 TRP CD1 NE1 sing Y N 445 TRP CD1 HD1 sing N N 446 TRP CD2 CE2 doub Y N 447 TRP CD2 CE3 sing Y N 448 TRP NE1 CE2 sing Y N 449 TRP NE1 HE1 sing N N 450 TRP CE2 CZ2 sing Y N 451 TRP CE3 CZ3 doub Y N 452 TRP CE3 HE3 sing N N 453 TRP CZ2 CH2 doub Y N 454 TRP CZ2 HZ2 sing N N 455 TRP CZ3 CH2 sing Y N 456 TRP CZ3 HZ3 sing N N 457 TRP CH2 HH2 sing N N 458 TRP OXT HXT sing N N 459 TYR N CA sing N N 460 TYR N H sing N N 461 TYR N H2 sing N N 462 TYR CA C sing N N 463 TYR CA CB sing N N 464 TYR CA HA sing N N 465 TYR C O doub N N 466 TYR C OXT sing N N 467 TYR CB CG sing N N 468 TYR CB HB2 sing N N 469 TYR CB HB3 sing N N 470 TYR CG CD1 doub Y N 471 TYR CG CD2 sing Y N 472 TYR CD1 CE1 sing Y N 473 TYR CD1 HD1 sing N N 474 TYR CD2 CE2 doub Y N 475 TYR CD2 HD2 sing N N 476 TYR CE1 CZ doub Y N 477 TYR CE1 HE1 sing N N 478 TYR CE2 CZ sing Y N 479 TYR CE2 HE2 sing N N 480 TYR CZ OH sing N N 481 TYR OH HH sing N N 482 TYR OXT HXT sing N N 483 VAL N CA sing N N 484 VAL N H sing N N 485 VAL N H2 sing N N 486 VAL CA C sing N N 487 VAL CA CB sing N N 488 VAL CA HA sing N N 489 VAL C O doub N N 490 VAL C OXT sing N N 491 VAL CB CG1 sing N N 492 VAL CB CG2 sing N N 493 VAL CB HB sing N N 494 VAL CG1 HG11 sing N N 495 VAL CG1 HG12 sing N N 496 VAL CG1 HG13 sing N N 497 VAL CG2 HG21 sing N N 498 VAL CG2 HG22 sing N N 499 VAL CG2 HG23 sing N N 500 VAL OXT HXT sing N N 501 # _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type other _pdbx_initial_refinement_model.source_name ? _pdbx_initial_refinement_model.details 'Sa F98Y DHFR bound to Folate and NADPH (Dale et al., J.Mol.Biol. 1997, structure not deposited in the PDB)' # _atom_sites.entry_id 3F0Q _atom_sites.fract_transf_matrix[1][1] 0.012632 _atom_sites.fract_transf_matrix[1][2] 0.007293 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014587 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009191 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_