data_3F14 # _entry.id 3F14 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3F14 pdb_00003f14 10.2210/pdb3f14/pdb RCSB RCSB050014 ? ? WWPDB D_1000050014 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 390726 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 3F14 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2008-10-27 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title ;Crystal structure of NTF2-like protein of unknown function (YP_680363.1) from CYTOPHAGA HUTCHINSONII ATCC 33406 at 1.45 A resolution ; _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 3F14 _cell.length_a 57.640 _cell.length_b 57.640 _cell.length_c 59.390 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 6 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3F14 _symmetry.Int_Tables_number 154 _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'uncharacterized NTF2-like protein' 12875.026 1 ? ? ? ? 2 non-polymer syn 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL 122.143 1 ? ? ? ? 3 non-polymer syn 'TRIETHYLENE GLYCOL' 150.173 1 ? ? ? ? 4 water nat water 18.015 106 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;G(MSE)ETTHYSIAQHFSSGDFPAVYACFNDIIEWNIIGNQVVKGKADVIDFCNK(MSE)LPE(MSE)KGAVLTNDNVIQ NENQIVIEGKCRYFDAEGKEAFVSYCDIYRFENDTIKTITSYCI ; _entity_poly.pdbx_seq_one_letter_code_can ;GMETTHYSIAQHFSSGDFPAVYACFNDIIEWNIIGNQVVKGKADVIDFCNKMLPEMKGAVLTNDNVIQNENQIVIEGKCR YFDAEGKEAFVSYCDIYRFENDTIKTITSYCI ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier 390726 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 MSE n 1 3 GLU n 1 4 THR n 1 5 THR n 1 6 HIS n 1 7 TYR n 1 8 SER n 1 9 ILE n 1 10 ALA n 1 11 GLN n 1 12 HIS n 1 13 PHE n 1 14 SER n 1 15 SER n 1 16 GLY n 1 17 ASP n 1 18 PHE n 1 19 PRO n 1 20 ALA n 1 21 VAL n 1 22 TYR n 1 23 ALA n 1 24 CYS n 1 25 PHE n 1 26 ASN n 1 27 ASP n 1 28 ILE n 1 29 ILE n 1 30 GLU n 1 31 TRP n 1 32 ASN n 1 33 ILE n 1 34 ILE n 1 35 GLY n 1 36 ASN n 1 37 GLN n 1 38 VAL n 1 39 VAL n 1 40 LYS n 1 41 GLY n 1 42 LYS n 1 43 ALA n 1 44 ASP n 1 45 VAL n 1 46 ILE n 1 47 ASP n 1 48 PHE n 1 49 CYS n 1 50 ASN n 1 51 LYS n 1 52 MSE n 1 53 LEU n 1 54 PRO n 1 55 GLU n 1 56 MSE n 1 57 LYS n 1 58 GLY n 1 59 ALA n 1 60 VAL n 1 61 LEU n 1 62 THR n 1 63 ASN n 1 64 ASP n 1 65 ASN n 1 66 VAL n 1 67 ILE n 1 68 GLN n 1 69 ASN n 1 70 GLU n 1 71 ASN n 1 72 GLN n 1 73 ILE n 1 74 VAL n 1 75 ILE n 1 76 GLU n 1 77 GLY n 1 78 LYS n 1 79 CYS n 1 80 ARG n 1 81 TYR n 1 82 PHE n 1 83 ASP n 1 84 ALA n 1 85 GLU n 1 86 GLY n 1 87 LYS n 1 88 GLU n 1 89 ALA n 1 90 PHE n 1 91 VAL n 1 92 SER n 1 93 TYR n 1 94 CYS n 1 95 ASP n 1 96 ILE n 1 97 TYR n 1 98 ARG n 1 99 PHE n 1 100 GLU n 1 101 ASN n 1 102 ASP n 1 103 THR n 1 104 ILE n 1 105 LYS n 1 106 THR n 1 107 ILE n 1 108 THR n 1 109 SER n 1 110 TYR n 1 111 CYS n 1 112 ILE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'CHU_3788, YP_680363.1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Cytophaga hutchinsonii ATCC 33406' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 269798 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc 33406 _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q11NJ3_CYTH3 _struct_ref.pdbx_db_accession Q11NJ3 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;METTHYSIAQHFSSGDFPAVYACFNDIIEWNIIGNQVVKGKADVIDFCNKMLPEMKGAVLTNDNVIQNENQIVIEGKCRY FDAEGKEAFVSYCDIYRFENDTIKTITSYCI ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3F14 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 112 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q11NJ3 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 111 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 111 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3F14 _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q11NJ3 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 0 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PGE non-polymer . 'TRIETHYLENE GLYCOL' ? 'C6 H14 O4' 150.173 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TRS non-polymer . 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL 'TRIS BUFFER' 'C4 H12 N O3 1' 122.143 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 3F14 # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.21 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 44.39 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details '0.2000M NaOAc, 30.0000% PEG-4000, 0.1M TRIS pH 8.5, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.details 'Flat collimating mirror, toroid focusing mirror' _diffrn_detector.pdbx_collection_date 2008-08-03 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Double crystal monochromator' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.91162 1.0 2 0.97939 1.0 3 0.97925 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL9-2 _diffrn_source.type 'SSRL BEAMLINE BL9-2' _diffrn_source.pdbx_wavelength_list 0.91162,0.97939,0.97925 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 3F14 _reflns.d_resolution_high 1.45 _reflns.d_resolution_low 25.933 _reflns.number_obs 20633 _reflns.pdbx_Rmerge_I_obs 0.043 _reflns.percent_possible_obs 99.700 _reflns.B_iso_Wilson_estimate 17.008 _reflns.observed_criterion_sigma_I -3.00 _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 16.580 _reflns.pdbx_redundancy 7.16 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.45 1.50 13549 ? 3671 0.538 2.5 ? ? ? ? ? 98.80 1 1 1.50 1.56 14859 ? 3965 0.377 3.6 ? ? ? ? ? 99.80 2 1 1.56 1.63 14450 ? 3839 0.266 5.0 ? ? ? ? ? 99.80 3 1 1.63 1.72 15535 ? 4101 0.187 6.9 ? ? ? ? ? 99.80 4 1 1.72 1.83 15078 ? 3971 0.132 9.6 ? ? ? ? ? 99.90 5 1 1.83 1.97 14858 ? 3907 0.082 14.5 ? ? ? ? ? 99.90 6 1 1.97 2.17 14853 ? 3892 0.054 21.7 ? ? ? ? ? 99.80 7 1 2.17 2.48 14744 ? 3850 0.041 26.6 ? ? ? ? ? 99.70 8 1 2.48 3.12 14887 ? 3872 0.032 33.5 ? ? ? ? ? 99.60 9 1 3.12 25.933 14983 ? 3931 0.025 41.8 ? ? ? ? ? 99.40 10 1 # _refine.entry_id 3F14 _refine.ls_d_res_high 1.450 _refine.ls_d_res_low 25.933 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 99.850 _refine.ls_number_reflns_obs 20606 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1.HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2.ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. 3.A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4.PEG MOLECULE AND TRIS ANION FROM CRYSTALLIZATION ARE MODELED INTO THIS STRUCTURE. ; _refine.ls_R_factor_obs 0.171 _refine.ls_R_factor_R_work 0.171 _refine.ls_R_factor_R_free 0.181 _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 1054 _refine.B_iso_mean 20.996 _refine.aniso_B[1][1] 0.080 _refine.aniso_B[2][2] 0.080 _refine.aniso_B[3][3] -0.130 _refine.aniso_B[1][2] 0.040 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.966 _refine.correlation_coeff_Fo_to_Fc_free 0.968 _refine.pdbx_overall_ESU_R 0.069 _refine.pdbx_overall_ESU_R_Free 0.064 _refine.overall_SU_ML 0.045 _refine.overall_SU_B 2.333 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.B_iso_max 68.03 _refine.B_iso_min 8.96 _refine.occupancy_max 1.00 _refine.occupancy_min 0.30 _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 873 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 18 _refine_hist.number_atoms_solvent 106 _refine_hist.number_atoms_total 997 _refine_hist.d_res_high 1.450 _refine_hist.d_res_low 25.933 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1039 0.018 0.022 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 672 0.002 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1417 1.753 1.935 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 1653 1.033 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 132 5.841 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 52 40.662 25.962 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 166 10.530 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 1 30.342 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 149 0.088 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1204 0.010 0.020 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 216 0.004 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 202 0.285 0.300 ? 'X-RAY DIFFRACTION' ? r_nbd_other 696 0.182 0.300 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 519 0.184 0.500 ? 'X-RAY DIFFRACTION' ? r_nbtor_other 518 0.088 0.500 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 168 0.188 0.500 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other 2 0.065 0.500 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 10 0.120 0.300 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 23 0.277 0.300 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 26 0.182 0.500 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 700 2.148 3.000 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 252 0.503 3.000 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1037 2.690 5.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 450 5.369 8.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 380 6.442 11.000 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.450 _refine_ls_shell.d_res_low 1.488 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 99.130 _refine_ls_shell.number_reflns_R_work 1398 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.208 _refine_ls_shell.R_factor_R_free 0.283 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 81 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1479 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3F14 _struct.title ;Crystal structure of NTF2-like protein of unknown function (YP_680363.1) from CYTOPHAGA HUTCHINSONII ATCC 33406 at 1.45 A resolution ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;YP_680363.1, NTF2-like protein of unknown function, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, unknown function ; _struct_keywords.pdbx_keywords 'structural genomics, unknown function' _struct_keywords.entry_id 3F14 # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 1 ? SER A 15 ? GLY A 0 SER A 14 1 ? 15 HELX_P HELX_P2 2 ASP A 17 ? ALA A 23 ? ASP A 16 ALA A 22 5 ? 7 HELX_P HELX_P3 3 GLY A 41 ? GLY A 58 ? GLY A 40 GLY A 57 1 ? 18 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GLY 1 C ? ? ? 1_555 A MSE 2 N ? ? A GLY 0 A MSE 1 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale2 covale both ? A MSE 2 C ? ? ? 1_555 A GLU 3 N ? ? A MSE 1 A GLU 2 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale3 covale both ? A LYS 51 C A ? ? 1_555 A MSE 52 N A ? A LYS 50 A MSE 51 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale4 covale both ? A LYS 51 C B ? ? 1_555 A MSE 52 N B ? A LYS 50 A MSE 51 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale5 covale both ? A MSE 52 C A ? ? 1_555 A LEU 53 N ? ? A MSE 51 A LEU 52 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale6 covale both ? A MSE 52 C B ? ? 1_555 A LEU 53 N ? ? A MSE 51 A LEU 52 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale7 covale both ? A GLU 55 C ? ? ? 1_555 A MSE 56 N ? ? A GLU 54 A MSE 55 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale8 covale both ? A MSE 56 C ? ? ? 1_555 A LYS 57 N ? ? A MSE 55 A LYS 56 1_555 ? ? ? ? ? ? ? 1.320 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 6 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLN A 37 ? LYS A 40 ? GLN A 36 LYS A 39 A 2 PHE A 25 ? ILE A 33 ? PHE A 24 ILE A 32 A 3 THR A 103 ? ILE A 112 ? THR A 102 ILE A 111 A 4 GLU A 88 ? GLU A 100 ? GLU A 87 GLU A 99 A 5 GLN A 72 ? PHE A 82 ? GLN A 71 PHE A 81 A 6 VAL A 60 ? GLN A 68 ? VAL A 59 GLN A 67 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O GLN A 37 ? O GLN A 36 N ILE A 33 ? N ILE A 32 A 2 3 N ASN A 32 ? N ASN A 31 O ILE A 107 ? O ILE A 106 A 3 4 O ILE A 112 ? O ILE A 111 N SER A 92 ? N SER A 91 A 4 5 O TYR A 97 ? O TYR A 96 N ILE A 73 ? N ILE A 72 A 5 6 O ARG A 80 ? O ARG A 79 N VAL A 60 ? N VAL A 59 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A TRS 112 ? 8 'BINDING SITE FOR RESIDUE TRS A 112' AC2 Software A PGE 113 ? 4 'BINDING SITE FOR RESIDUE PGE A 113' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 PHE A 13 ? PHE A 12 . ? 1_555 ? 2 AC1 8 SER A 14 ? SER A 13 . ? 1_555 ? 3 AC1 8 PHE A 18 ? PHE A 17 . ? 1_555 ? 4 AC1 8 MSE A 56 ? MSE A 55 . ? 1_555 ? 5 AC1 8 TYR A 93 ? TYR A 92 . ? 1_555 ? 6 AC1 8 ASP A 95 ? ASP A 94 . ? 1_555 ? 7 AC1 8 CYS A 111 ? CYS A 110 . ? 1_555 ? 8 AC1 8 PGE C . ? PGE A 113 . ? 1_555 ? 9 AC2 4 GLU A 55 ? GLU A 54 . ? 1_555 ? 10 AC2 4 TRS B . ? TRS A 112 . ? 1_555 ? 11 AC2 4 HOH D . ? HOH A 198 . ? 1_555 ? 12 AC2 4 HOH D . ? HOH A 202 . ? 1_555 ? # _atom_sites.entry_id 3F14 _atom_sites.fract_transf_matrix[1][1] 0.017349 _atom_sites.fract_transf_matrix[1][2] 0.010016 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020033 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.016838 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 0 GLY GLY A . n A 1 2 MSE 2 1 1 MSE MSE A . n A 1 3 GLU 3 2 2 GLU GLU A . n A 1 4 THR 4 3 3 THR THR A . n A 1 5 THR 5 4 4 THR THR A . n A 1 6 HIS 6 5 5 HIS HIS A . n A 1 7 TYR 7 6 6 TYR TYR A . n A 1 8 SER 8 7 7 SER SER A . n A 1 9 ILE 9 8 8 ILE ILE A . n A 1 10 ALA 10 9 9 ALA ALA A . n A 1 11 GLN 11 10 10 GLN GLN A . n A 1 12 HIS 12 11 11 HIS HIS A . n A 1 13 PHE 13 12 12 PHE PHE A . n A 1 14 SER 14 13 13 SER SER A . n A 1 15 SER 15 14 14 SER SER A . n A 1 16 GLY 16 15 15 GLY GLY A . n A 1 17 ASP 17 16 16 ASP ASP A . n A 1 18 PHE 18 17 17 PHE PHE A . n A 1 19 PRO 19 18 18 PRO PRO A . n A 1 20 ALA 20 19 19 ALA ALA A . n A 1 21 VAL 21 20 20 VAL VAL A . n A 1 22 TYR 22 21 21 TYR TYR A . n A 1 23 ALA 23 22 22 ALA ALA A . n A 1 24 CYS 24 23 23 CYS CYS A . n A 1 25 PHE 25 24 24 PHE PHE A . n A 1 26 ASN 26 25 25 ASN ASN A . n A 1 27 ASP 27 26 26 ASP ASP A . n A 1 28 ILE 28 27 27 ILE ILE A . n A 1 29 ILE 29 28 28 ILE ILE A . n A 1 30 GLU 30 29 29 GLU GLU A . n A 1 31 TRP 31 30 30 TRP TRP A . n A 1 32 ASN 32 31 31 ASN ASN A . n A 1 33 ILE 33 32 32 ILE ILE A . n A 1 34 ILE 34 33 33 ILE ILE A . n A 1 35 GLY 35 34 34 GLY GLY A . n A 1 36 ASN 36 35 35 ASN ASN A . n A 1 37 GLN 37 36 36 GLN GLN A . n A 1 38 VAL 38 37 37 VAL VAL A . n A 1 39 VAL 39 38 38 VAL VAL A . n A 1 40 LYS 40 39 39 LYS LYS A . n A 1 41 GLY 41 40 40 GLY GLY A . n A 1 42 LYS 42 41 41 LYS LYS A . n A 1 43 ALA 43 42 42 ALA ALA A . n A 1 44 ASP 44 43 43 ASP ASP A . n A 1 45 VAL 45 44 44 VAL VAL A . n A 1 46 ILE 46 45 45 ILE ILE A . n A 1 47 ASP 47 46 46 ASP ASP A . n A 1 48 PHE 48 47 47 PHE PHE A . n A 1 49 CYS 49 48 48 CYS CYS A . n A 1 50 ASN 50 49 49 ASN ASN A . n A 1 51 LYS 51 50 50 LYS LYS A . n A 1 52 MSE 52 51 51 MSE MSE A . n A 1 53 LEU 53 52 52 LEU LEU A . n A 1 54 PRO 54 53 53 PRO PRO A . n A 1 55 GLU 55 54 54 GLU GLU A . n A 1 56 MSE 56 55 55 MSE MSE A . n A 1 57 LYS 57 56 56 LYS LYS A . n A 1 58 GLY 58 57 57 GLY GLY A . n A 1 59 ALA 59 58 58 ALA ALA A . n A 1 60 VAL 60 59 59 VAL VAL A . n A 1 61 LEU 61 60 60 LEU LEU A . n A 1 62 THR 62 61 61 THR THR A . n A 1 63 ASN 63 62 62 ASN ASN A . n A 1 64 ASP 64 63 63 ASP ASP A . n A 1 65 ASN 65 64 64 ASN ASN A . n A 1 66 VAL 66 65 65 VAL VAL A . n A 1 67 ILE 67 66 66 ILE ILE A . n A 1 68 GLN 68 67 67 GLN GLN A . n A 1 69 ASN 69 68 68 ASN ASN A . n A 1 70 GLU 70 69 69 GLU GLU A . n A 1 71 ASN 71 70 70 ASN ASN A . n A 1 72 GLN 72 71 71 GLN GLN A . n A 1 73 ILE 73 72 72 ILE ILE A . n A 1 74 VAL 74 73 73 VAL VAL A . n A 1 75 ILE 75 74 74 ILE ILE A . n A 1 76 GLU 76 75 75 GLU GLU A . n A 1 77 GLY 77 76 76 GLY GLY A . n A 1 78 LYS 78 77 77 LYS LYS A . n A 1 79 CYS 79 78 78 CYS CYS A . n A 1 80 ARG 80 79 79 ARG ARG A . n A 1 81 TYR 81 80 80 TYR TYR A . n A 1 82 PHE 82 81 81 PHE PHE A . n A 1 83 ASP 83 82 82 ASP ASP A . n A 1 84 ALA 84 83 83 ALA ALA A . n A 1 85 GLU 85 84 84 GLU GLU A . n A 1 86 GLY 86 85 85 GLY GLY A . n A 1 87 LYS 87 86 86 LYS LYS A . n A 1 88 GLU 88 87 87 GLU GLU A . n A 1 89 ALA 89 88 88 ALA ALA A . n A 1 90 PHE 90 89 89 PHE PHE A . n A 1 91 VAL 91 90 90 VAL VAL A . n A 1 92 SER 92 91 91 SER SER A . n A 1 93 TYR 93 92 92 TYR TYR A . n A 1 94 CYS 94 93 93 CYS CYS A . n A 1 95 ASP 95 94 94 ASP ASP A . n A 1 96 ILE 96 95 95 ILE ILE A . n A 1 97 TYR 97 96 96 TYR TYR A . n A 1 98 ARG 98 97 97 ARG ARG A . n A 1 99 PHE 99 98 98 PHE PHE A . n A 1 100 GLU 100 99 99 GLU GLU A . n A 1 101 ASN 101 100 100 ASN ASN A . n A 1 102 ASP 102 101 101 ASP ASP A . n A 1 103 THR 103 102 102 THR THR A . n A 1 104 ILE 104 103 103 ILE ILE A . n A 1 105 LYS 105 104 104 LYS LYS A . n A 1 106 THR 106 105 105 THR THR A . n A 1 107 ILE 107 106 106 ILE ILE A . n A 1 108 THR 108 107 107 THR THR A . n A 1 109 SER 109 108 108 SER SER A . n A 1 110 TYR 110 109 109 TYR TYR A . n A 1 111 CYS 111 110 110 CYS CYS A . n A 1 112 ILE 112 111 111 ILE ILE A . n # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TRS 1 112 1 TRS TRS A . C 3 PGE 1 113 2 PGE PGE A . D 4 HOH 1 114 3 HOH HOH A . D 4 HOH 2 115 4 HOH HOH A . D 4 HOH 3 116 5 HOH HOH A . D 4 HOH 4 117 6 HOH HOH A . D 4 HOH 5 118 7 HOH HOH A . D 4 HOH 6 119 8 HOH HOH A . D 4 HOH 7 120 9 HOH HOH A . D 4 HOH 8 121 10 HOH HOH A . D 4 HOH 9 122 11 HOH HOH A . D 4 HOH 10 123 12 HOH HOH A . D 4 HOH 11 124 13 HOH HOH A . D 4 HOH 12 125 14 HOH HOH A . D 4 HOH 13 126 15 HOH HOH A . D 4 HOH 14 127 16 HOH HOH A . D 4 HOH 15 128 17 HOH HOH A . D 4 HOH 16 129 18 HOH HOH A . D 4 HOH 17 130 19 HOH HOH A . D 4 HOH 18 131 20 HOH HOH A . D 4 HOH 19 132 21 HOH HOH A . D 4 HOH 20 133 22 HOH HOH A . D 4 HOH 21 134 23 HOH HOH A . D 4 HOH 22 135 24 HOH HOH A . D 4 HOH 23 136 25 HOH HOH A . D 4 HOH 24 137 26 HOH HOH A . D 4 HOH 25 138 27 HOH HOH A . D 4 HOH 26 139 28 HOH HOH A . D 4 HOH 27 140 29 HOH HOH A . D 4 HOH 28 141 30 HOH HOH A . D 4 HOH 29 142 31 HOH HOH A . D 4 HOH 30 143 32 HOH HOH A . D 4 HOH 31 144 33 HOH HOH A . D 4 HOH 32 145 34 HOH HOH A . D 4 HOH 33 146 35 HOH HOH A . D 4 HOH 34 147 36 HOH HOH A . D 4 HOH 35 148 37 HOH HOH A . D 4 HOH 36 149 38 HOH HOH A . D 4 HOH 37 150 39 HOH HOH A . D 4 HOH 38 151 40 HOH HOH A . D 4 HOH 39 152 41 HOH HOH A . D 4 HOH 40 153 42 HOH HOH A . D 4 HOH 41 154 43 HOH HOH A . D 4 HOH 42 155 44 HOH HOH A . D 4 HOH 43 156 45 HOH HOH A . D 4 HOH 44 157 46 HOH HOH A . D 4 HOH 45 158 47 HOH HOH A . D 4 HOH 46 159 48 HOH HOH A . D 4 HOH 47 160 49 HOH HOH A . D 4 HOH 48 161 50 HOH HOH A . D 4 HOH 49 162 51 HOH HOH A . D 4 HOH 50 163 52 HOH HOH A . D 4 HOH 51 164 53 HOH HOH A . D 4 HOH 52 165 54 HOH HOH A . D 4 HOH 53 166 55 HOH HOH A . D 4 HOH 54 167 56 HOH HOH A . D 4 HOH 55 168 57 HOH HOH A . D 4 HOH 56 169 58 HOH HOH A . D 4 HOH 57 170 59 HOH HOH A . D 4 HOH 58 171 60 HOH HOH A . D 4 HOH 59 172 61 HOH HOH A . D 4 HOH 60 173 62 HOH HOH A . D 4 HOH 61 174 63 HOH HOH A . D 4 HOH 62 175 64 HOH HOH A . D 4 HOH 63 176 65 HOH HOH A . D 4 HOH 64 177 66 HOH HOH A . D 4 HOH 65 178 67 HOH HOH A . D 4 HOH 66 179 68 HOH HOH A . D 4 HOH 67 180 69 HOH HOH A . D 4 HOH 68 181 70 HOH HOH A . D 4 HOH 69 182 71 HOH HOH A . D 4 HOH 70 183 72 HOH HOH A . D 4 HOH 71 184 73 HOH HOH A . D 4 HOH 72 185 74 HOH HOH A . D 4 HOH 73 186 75 HOH HOH A . D 4 HOH 74 187 76 HOH HOH A . D 4 HOH 75 188 77 HOH HOH A . D 4 HOH 76 189 78 HOH HOH A . D 4 HOH 77 190 79 HOH HOH A . D 4 HOH 78 191 80 HOH HOH A . D 4 HOH 79 192 81 HOH HOH A . D 4 HOH 80 193 82 HOH HOH A . D 4 HOH 81 194 83 HOH HOH A . D 4 HOH 82 195 84 HOH HOH A . D 4 HOH 83 196 85 HOH HOH A . D 4 HOH 84 197 86 HOH HOH A . D 4 HOH 85 198 87 HOH HOH A . D 4 HOH 86 199 88 HOH HOH A . D 4 HOH 87 200 89 HOH HOH A . D 4 HOH 88 201 90 HOH HOH A . D 4 HOH 89 202 91 HOH HOH A . D 4 HOH 90 203 92 HOH HOH A . D 4 HOH 91 204 93 HOH HOH A . D 4 HOH 92 205 94 HOH HOH A . D 4 HOH 93 206 95 HOH HOH A . D 4 HOH 94 207 96 HOH HOH A . D 4 HOH 95 208 97 HOH HOH A . D 4 HOH 96 209 98 HOH HOH A . D 4 HOH 97 210 99 HOH HOH A . D 4 HOH 98 211 100 HOH HOH A . D 4 HOH 99 212 101 HOH HOH A . D 4 HOH 100 213 102 HOH HOH A . D 4 HOH 101 214 103 HOH HOH A . D 4 HOH 102 215 104 HOH HOH A . D 4 HOH 103 216 105 HOH HOH A . D 4 HOH 104 217 106 HOH HOH A . D 4 HOH 105 218 107 HOH HOH A . D 4 HOH 106 219 108 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 2 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 52 A MSE 51 ? MET SELENOMETHIONINE 3 A MSE 56 A MSE 55 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2990 ? 1 MORE 3 ? 1 'SSA (A^2)' 10670 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 6_765 -x+2,-x+y+1,-z+2/3 -0.5000000000 -0.8660254038 0.0000000000 86.4600000000 -0.8660254038 0.5000000000 0.0000000000 49.9177042741 0.0000000000 0.0000000000 -1.0000000000 39.5933333333 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-11-18 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-25 4 'Structure model' 1 3 2019-07-24 5 'Structure model' 1 4 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Refinement description' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' 7 5 'Structure model' 'Database references' 8 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' software 3 4 'Structure model' struct_conn 4 5 'Structure model' database_2 5 5 'Structure model' struct_ref_seq_dif 6 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.name' 3 4 'Structure model' '_software.classification' 4 4 'Structure model' '_software.contact_author' 5 4 'Structure model' '_software.contact_author_email' 6 4 'Structure model' '_software.language' 7 4 'Structure model' '_software.location' 8 4 'Structure model' '_software.name' 9 4 'Structure model' '_software.type' 10 4 'Structure model' '_software.version' 11 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 12 5 'Structure model' '_database_2.pdbx_DOI' 13 5 'Structure model' '_database_2.pdbx_database_accession' 14 5 'Structure model' '_struct_ref_seq_dif.details' 15 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 16 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 17 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 45.6928 _pdbx_refine_tls.origin_y 18.9197 _pdbx_refine_tls.origin_z 7.7350 _pdbx_refine_tls.T[1][1] -0.0150 _pdbx_refine_tls.T[2][2] -0.0476 _pdbx_refine_tls.T[3][3] -0.0227 _pdbx_refine_tls.T[1][2] -0.0080 _pdbx_refine_tls.T[1][3] 0.0204 _pdbx_refine_tls.T[2][3] -0.0179 _pdbx_refine_tls.L[1][1] 1.4244 _pdbx_refine_tls.L[2][2] 1.8289 _pdbx_refine_tls.L[3][3] 2.1145 _pdbx_refine_tls.L[1][2] 1.2321 _pdbx_refine_tls.L[1][3] 0.6811 _pdbx_refine_tls.L[2][3] 0.5826 _pdbx_refine_tls.S[1][1] -0.0721 _pdbx_refine_tls.S[2][2] 0.1425 _pdbx_refine_tls.S[3][3] -0.0703 _pdbx_refine_tls.S[1][2] 0.1481 _pdbx_refine_tls.S[1][3] -0.1538 _pdbx_refine_tls.S[2][3] -0.1270 _pdbx_refine_tls.S[2][1] -0.1999 _pdbx_refine_tls.S[3][1] 0.0979 _pdbx_refine_tls.S[3][2] 0.0914 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 111 _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.beg_auth_seq_id 0 _pdbx_refine_tls_group.beg_label_asym_id . _pdbx_refine_tls_group.beg_label_seq_id . _pdbx_refine_tls_group.end_label_asym_id . _pdbx_refine_tls_group.end_label_seq_id . _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.selection_details ? # _phasing.method MAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.2.0019 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 1 PHENIX . ? package 'P.D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 2 SHELX . ? package 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 3 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 4 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 5 PDB_EXTRACT 3.006 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 XDS . ? ? ? ? 'data reduction' ? ? ? 7 SHELXD . ? ? ? ? phasing ? ? ? 8 autoSHARP . ? ? ? ? phasing ? ? ? 9 # _pdbx_entry_details.entry_id 3F14 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. ; _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 CB _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 GLU _pdbx_validate_rmsd_bond.auth_seq_id_1 87 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 CG _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 GLU _pdbx_validate_rmsd_bond.auth_seq_id_2 87 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.387 _pdbx_validate_rmsd_bond.bond_target_value 1.517 _pdbx_validate_rmsd_bond.bond_deviation -0.130 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.019 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N A ASN 70 ? ? CA A ASN 70 ? ? CB A ASN 70 ? ? 98.76 110.60 -11.84 1.80 N 2 1 NE A ARG 79 ? ? CZ A ARG 79 ? ? NH2 A ARG 79 ? ? 116.61 120.30 -3.69 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 35 ? B -123.11 -80.15 2 1 ASP A 63 ? B -128.90 -106.16 3 1 ASN A 68 ? A -112.58 -165.15 4 1 ASN A 100 ? ? 52.23 -115.68 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 2 ? CG ? A GLU 3 CG 2 1 Y 1 A GLU 2 ? CD ? A GLU 3 CD 3 1 Y 1 A GLU 2 ? OE1 ? A GLU 3 OE1 4 1 Y 1 A GLU 2 ? OE2 ? A GLU 3 OE2 5 1 Y 1 A GLU 69 ? CG ? A GLU 70 CG 6 1 Y 1 A GLU 69 ? CD ? A GLU 70 CD 7 1 Y 1 A GLU 69 ? OE1 ? A GLU 70 OE1 8 1 Y 1 A GLU 69 ? OE2 ? A GLU 70 OE2 9 1 Y 1 A LYS 77 ? CD ? A LYS 78 CD 10 1 Y 1 A LYS 77 ? CE ? A LYS 78 CE 11 1 Y 1 A LYS 77 ? NZ ? A LYS 78 NZ 12 1 Y 1 A LYS 86 ? CG ? A LYS 87 CG 13 1 Y 1 A LYS 86 ? CD ? A LYS 87 CD 14 1 Y 1 A LYS 86 ? CE ? A LYS 87 CE 15 1 Y 1 A LYS 86 ? NZ ? A LYS 87 NZ 16 1 Y 1 A ARG 97 ? NE ? A ARG 98 NE 17 1 Y 1 A ARG 97 ? CZ ? A ARG 98 CZ 18 1 Y 1 A ARG 97 ? NH1 ? A ARG 98 NH1 19 1 Y 1 A ARG 97 ? NH2 ? A ARG 98 NH2 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL TRS 3 'TRIETHYLENE GLYCOL' PGE 4 water HOH #