data_3F1I # _entry.id 3F1I # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3F1I RCSB RCSB050028 WWPDB D_1000050028 # _pdbx_database_status.entry_id 3F1I _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2008-10-28 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ren, X.' 1 'Kloer, D.P.' 2 'Kim, Y.' 3 'Ghirlando, R.' 4 'Saidi, L.' 5 'Hummer, G.' 6 'Hurley, J.H.' 7 # _citation.id primary _citation.title 'Hybrid Structural Model of the Complete Human ESCRT-0 Complex.' _citation.journal_abbrev Structure _citation.journal_volume 17 _citation.page_first 406 _citation.page_last 416 _citation.year 2009 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19278655 _citation.pdbx_database_id_DOI 10.1016/j.str.2009.01.012 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Ren, X.' 1 primary 'Kloer, D.P.' 2 primary 'Kim, Y.C.' 3 primary 'Ghirlando, R.' 4 primary 'Saidi, L.F.' 5 primary 'Hummer, G.' 6 primary 'Hurley, J.H.' 7 # _cell.entry_id 3F1I _cell.length_a 78.059 _cell.length_b 78.059 _cell.length_c 152.849 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3F1I _symmetry.space_group_name_H-M 'I 41' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 80 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Hepatocyte growth factor-regulated tyrosine kinase substrate' 11393.910 1 ? ? 'Helical domain' ? 2 polymer man 'Signal transducing adapter molecule 1' 8965.172 2 ? ? 'Helical domain' ? 3 water nat water 18.015 28 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'Protein pp110, Hrs' 2 STAM-1 # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;SHEQFLKALQNAVTTFVNRMKSNHMRGRSITNDSAVLSLFQSINGMHPQLLELLNQLDERRLYYEGLQDKLAQIRDARGA LSALREEHREKLRRAAEE ; ;SHEQFLKALQNAVTTFVNRMKSNHMRGRSITNDSAVLSLFQSINGMHPQLLELLNQLDERRLYYEGLQDKLAQIRDARGA LSALREEHREKLRRAAEE ; H ? 2 'polypeptide(L)' no no FIDEDKMDQLLQMLQSTDPSDDQPDLPELLHLEAMCHQMGPLIDEKLEDIDRKHSELSELNVKVMEALSLYTKLMNE FIDEDKMDQLLQMLQSTDPSDDQPDLPELLHLEAMCHQMGPLIDEKLEDIDRKHSELSELNVKVMEALSLYTKLMNE S,C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 HIS n 1 3 GLU n 1 4 GLN n 1 5 PHE n 1 6 LEU n 1 7 LYS n 1 8 ALA n 1 9 LEU n 1 10 GLN n 1 11 ASN n 1 12 ALA n 1 13 VAL n 1 14 THR n 1 15 THR n 1 16 PHE n 1 17 VAL n 1 18 ASN n 1 19 ARG n 1 20 MET n 1 21 LYS n 1 22 SER n 1 23 ASN n 1 24 HIS n 1 25 MET n 1 26 ARG n 1 27 GLY n 1 28 ARG n 1 29 SER n 1 30 ILE n 1 31 THR n 1 32 ASN n 1 33 ASP n 1 34 SER n 1 35 ALA n 1 36 VAL n 1 37 LEU n 1 38 SER n 1 39 LEU n 1 40 PHE n 1 41 GLN n 1 42 SER n 1 43 ILE n 1 44 ASN n 1 45 GLY n 1 46 MET n 1 47 HIS n 1 48 PRO n 1 49 GLN n 1 50 LEU n 1 51 LEU n 1 52 GLU n 1 53 LEU n 1 54 LEU n 1 55 ASN n 1 56 GLN n 1 57 LEU n 1 58 ASP n 1 59 GLU n 1 60 ARG n 1 61 ARG n 1 62 LEU n 1 63 TYR n 1 64 TYR n 1 65 GLU n 1 66 GLY n 1 67 LEU n 1 68 GLN n 1 69 ASP n 1 70 LYS n 1 71 LEU n 1 72 ALA n 1 73 GLN n 1 74 ILE n 1 75 ARG n 1 76 ASP n 1 77 ALA n 1 78 ARG n 1 79 GLY n 1 80 ALA n 1 81 LEU n 1 82 SER n 1 83 ALA n 1 84 LEU n 1 85 ARG n 1 86 GLU n 1 87 GLU n 1 88 HIS n 1 89 ARG n 1 90 GLU n 1 91 LYS n 1 92 LEU n 1 93 ARG n 1 94 ARG n 1 95 ALA n 1 96 ALA n 1 97 GLU n 1 98 GLU n 2 1 PHE n 2 2 ILE n 2 3 ASP n 2 4 GLU n 2 5 ASP n 2 6 LYS n 2 7 MET n 2 8 ASP n 2 9 GLN n 2 10 LEU n 2 11 LEU n 2 12 GLN n 2 13 MET n 2 14 LEU n 2 15 GLN n 2 16 SER n 2 17 THR n 2 18 ASP n 2 19 PRO n 2 20 SER n 2 21 ASP n 2 22 ASP n 2 23 GLN n 2 24 PRO n 2 25 ASP n 2 26 LEU n 2 27 PRO n 2 28 GLU n 2 29 LEU n 2 30 LEU n 2 31 HIS n 2 32 LEU n 2 33 GLU n 2 34 ALA n 2 35 MET n 2 36 CYS n 2 37 HIS n 2 38 GLN n 2 39 MET n 2 40 GLY n 2 41 PRO n 2 42 LEU n 2 43 ILE n 2 44 ASP n 2 45 GLU n 2 46 LYS n 2 47 LEU n 2 48 GLU n 2 49 ASP n 2 50 ILE n 2 51 ASP n 2 52 ARG n 2 53 LYS n 2 54 HIS n 2 55 SER n 2 56 GLU n 2 57 LEU n 2 58 SER n 2 59 GLU n 2 60 LEU n 2 61 ASN n 2 62 VAL n 2 63 LYS n 2 64 VAL n 2 65 MET n 2 66 GLU n 2 67 ALA n 2 68 LEU n 2 69 SER n 2 70 LEU n 2 71 TYR n 2 72 THR n 2 73 LYS n 2 74 LEU n 2 75 MET n 2 76 ASN n 2 77 GLU n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? ? ? human ? 'Hepatocyte growth factor regulated tyrosine kinase substrate (HGS), HGS, HRS' ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? 'Rosetta 2 (DE3) pLys' ? ? ? ? ? ? ? PLASIMD ? ? ? pST39 ? ? 2 1 sample ? ? ? human ? 'Signal transducing adaptor molecule (STAM), STAM, STAM1' ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? 'Rosetta 2 (DE3) pLys' ? ? ? ? ? ? ? PLASMID ? ? ? pST39 ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP HGS_HUMAN O14964 1 ;SHEQFLKALQNAVTTFVNRMKSNHMRGRSITNDSAVLSLFQSINGMHPQLLELLNQLDERRLYYEGLQDKLAQIRDARGA LSALREEHREKLRRAAEE ; 404 ? 2 UNP STAM1_HUMAN Q92783 2 FIDEDKMDQLLQMLQSTDPSDDQPDLPELLHLEAMCHQMGPLIDEKLEDIDRKHSELSELNVKVMEALSLYTKLMNE 301 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3F1I H 1 ? 98 ? O14964 404 ? 501 ? 404 501 2 2 3F1I S 1 ? 77 ? Q92783 301 ? 377 ? 301 377 3 2 3F1I C 1 ? 77 ? Q92783 301 ? 377 ? 301 377 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3F1I _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.97 _exptl_crystal.density_percent_sol 69.02 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 294 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.0 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '14% MPD, 100 mM CaCl2, 0.1 M sodium acetate, pH 5.0, VAPOR DIFFUSION, HANGING DROP, temperature 294K' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type ? _diffrn_detector.pdbx_collection_date 2008-06-11 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 22-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 22-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0000 # _reflns.entry_id 3F1I _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 69.50 _reflns.d_resolution_high 2.3 _reflns.number_obs 20041 _reflns.number_all ? _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.077 _reflns.pdbx_netI_over_sigmaI 23.4 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 7.5 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.30 _reflns_shell.d_res_low 2.38 _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.325 _reflns_shell.meanI_over_sigI_obs 4.2 _reflns_shell.pdbx_redundancy 6.0 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3F1I _refine.ls_number_reflns_obs 19005 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 44.77 _refine.ls_d_res_high 2.30 _refine.ls_percent_reflns_obs 99.24 _refine.ls_R_factor_obs 0.23941 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.23871 _refine.ls_R_factor_R_free 0.25305 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 1019 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min 1.00 _refine.occupancy_max 1.00 _refine.correlation_coeff_Fo_to_Fc 0.926 _refine.correlation_coeff_Fo_to_Fc_free 0.926 _refine.B_iso_mean 52.794 _refine.aniso_B[1][1] 1.29 _refine.aniso_B[2][2] 1.29 _refine.aniso_B[3][3] -2.58 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SIRAS _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.204 _refine.pdbx_overall_ESU_R_Free 0.175 _refine.overall_SU_ML 0.134 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 10.815 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1614 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 28 _refine_hist.number_atoms_total 1642 _refine_hist.d_res_high 2.30 _refine_hist.d_res_low 44.77 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.015 0.021 ? 1632 'X-RAY DIFFRACTION' ? r_bond_other_d 0.001 0.020 ? 1135 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.388 1.989 ? 2188 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.938 3.000 ? 2782 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 4.974 5.000 ? 196 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 35.919 25.393 ? 89 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 16.136 15.000 ? 331 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 13.944 15.000 ? 13 'X-RAY DIFFRACTION' ? r_chiral_restr 0.077 0.200 ? 244 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.005 0.020 ? 1787 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 290 'X-RAY DIFFRACTION' ? r_nbd_refined 0.212 0.200 ? 371 'X-RAY DIFFRACTION' ? r_nbd_other 0.163 0.200 ? 1047 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.167 0.200 ? 770 'X-RAY DIFFRACTION' ? r_nbtor_other 0.086 0.200 ? 863 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.182 0.200 ? 30 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.357 0.200 ? 17 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.286 0.200 ? 21 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.139 0.200 ? 6 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.852 1.500 ? 1316 'X-RAY DIFFRACTION' ? r_mcbond_other 0.173 1.500 ? 395 'X-RAY DIFFRACTION' ? r_mcangle_it 1.000 2.000 ? 1590 'X-RAY DIFFRACTION' ? r_scbond_it 2.132 3.000 ? 699 'X-RAY DIFFRACTION' ? r_scangle_it 3.098 4.500 ? 598 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.30 _refine_ls_shell.d_res_low 2.363 _refine_ls_shell.number_reflns_R_work 1301 _refine_ls_shell.R_factor_R_work 0.233 _refine_ls_shell.percent_reflns_obs 93.04 _refine_ls_shell.R_factor_R_free 0.286 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 75 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? # _struct.entry_id 3F1I _struct.title 'Human ESCRT-0 Core Complex' _struct.pdbx_descriptor 'Hepatocyte growth factor-regulated tyrosine kinase substrate, Signal transducing adapter molecule 1' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3F1I _struct_keywords.text ;HGS, STAM, ESCRT, ubiquitin, MVB, Endosome, Membrane, Metal-binding, Phosphoprotein, Protein transport, Transport, Zinc-finger, SH3 domain, PROTEIN BINDING ; _struct_keywords.pdbx_keywords 'PROTEIN BINDING' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 3 ? F N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 1 ? ARG A 26 ? SER H 404 ARG H 429 1 ? 26 HELX_P HELX_P2 2 SER A 29 ? ASN A 32 ? SER H 432 ASN H 435 5 ? 4 HELX_P HELX_P3 3 ASP A 33 ? GLU A 97 ? ASP H 436 GLU H 500 1 ? 65 HELX_P HELX_P4 4 ASP B 3 ? SER B 16 ? ASP S 303 SER S 316 1 ? 14 HELX_P HELX_P5 5 LEU B 26 ? ASN B 76 ? LEU S 326 ASN S 376 1 ? 51 HELX_P HELX_P6 6 GLN C 38 ? ASN C 61 ? GLN C 338 ASN C 361 1 ? 24 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _atom_sites.entry_id 3F1I _atom_sites.fract_transf_matrix[1][1] 0.012811 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012811 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006542 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 404 404 SER SER H . n A 1 2 HIS 2 405 405 HIS HIS H . n A 1 3 GLU 3 406 406 GLU GLU H . n A 1 4 GLN 4 407 407 GLN GLN H . n A 1 5 PHE 5 408 408 PHE PHE H . n A 1 6 LEU 6 409 409 LEU LEU H . n A 1 7 LYS 7 410 410 LYS LYS H . n A 1 8 ALA 8 411 411 ALA ALA H . n A 1 9 LEU 9 412 412 LEU LEU H . n A 1 10 GLN 10 413 413 GLN GLN H . n A 1 11 ASN 11 414 414 ASN ASN H . n A 1 12 ALA 12 415 415 ALA ALA H . n A 1 13 VAL 13 416 416 VAL VAL H . n A 1 14 THR 14 417 417 THR THR H . n A 1 15 THR 15 418 418 THR THR H . n A 1 16 PHE 16 419 419 PHE PHE H . n A 1 17 VAL 17 420 420 VAL VAL H . n A 1 18 ASN 18 421 421 ASN ASN H . n A 1 19 ARG 19 422 422 ARG ARG H . n A 1 20 MET 20 423 423 MET MET H . n A 1 21 LYS 21 424 424 LYS LYS H . n A 1 22 SER 22 425 425 SER SER H . n A 1 23 ASN 23 426 426 ASN ASN H . n A 1 24 HIS 24 427 427 HIS HIS H . n A 1 25 MET 25 428 428 MET MET H . n A 1 26 ARG 26 429 429 ARG ARG H . n A 1 27 GLY 27 430 430 GLY GLY H . n A 1 28 ARG 28 431 431 ARG ARG H . n A 1 29 SER 29 432 432 SER SER H . n A 1 30 ILE 30 433 433 ILE ILE H . n A 1 31 THR 31 434 434 THR THR H . n A 1 32 ASN 32 435 435 ASN ASN H . n A 1 33 ASP 33 436 436 ASP ASP H . n A 1 34 SER 34 437 437 SER SER H . n A 1 35 ALA 35 438 438 ALA ALA H . n A 1 36 VAL 36 439 439 VAL VAL H . n A 1 37 LEU 37 440 440 LEU LEU H . n A 1 38 SER 38 441 441 SER SER H . n A 1 39 LEU 39 442 442 LEU LEU H . n A 1 40 PHE 40 443 443 PHE PHE H . n A 1 41 GLN 41 444 444 GLN GLN H . n A 1 42 SER 42 445 445 SER SER H . n A 1 43 ILE 43 446 446 ILE ILE H . n A 1 44 ASN 44 447 447 ASN ASN H . n A 1 45 GLY 45 448 448 GLY GLY H . n A 1 46 MET 46 449 449 MET MET H . n A 1 47 HIS 47 450 450 HIS HIS H . n A 1 48 PRO 48 451 451 PRO PRO H . n A 1 49 GLN 49 452 452 GLN GLN H . n A 1 50 LEU 50 453 453 LEU LEU H . n A 1 51 LEU 51 454 454 LEU LEU H . n A 1 52 GLU 52 455 455 GLU GLU H . n A 1 53 LEU 53 456 456 LEU LEU H . n A 1 54 LEU 54 457 457 LEU LEU H . n A 1 55 ASN 55 458 458 ASN ASN H . n A 1 56 GLN 56 459 459 GLN GLN H . n A 1 57 LEU 57 460 460 LEU LEU H . n A 1 58 ASP 58 461 461 ASP ASP H . n A 1 59 GLU 59 462 462 GLU GLU H . n A 1 60 ARG 60 463 463 ARG ARG H . n A 1 61 ARG 61 464 464 ARG ARG H . n A 1 62 LEU 62 465 465 LEU LEU H . n A 1 63 TYR 63 466 466 TYR TYR H . n A 1 64 TYR 64 467 467 TYR TYR H . n A 1 65 GLU 65 468 468 GLU GLU H . n A 1 66 GLY 66 469 469 GLY GLY H . n A 1 67 LEU 67 470 470 LEU LEU H . n A 1 68 GLN 68 471 471 GLN GLN H . n A 1 69 ASP 69 472 472 ASP ASP H . n A 1 70 LYS 70 473 473 LYS LYS H . n A 1 71 LEU 71 474 474 LEU LEU H . n A 1 72 ALA 72 475 475 ALA ALA H . n A 1 73 GLN 73 476 476 GLN GLN H . n A 1 74 ILE 74 477 477 ILE ILE H . n A 1 75 ARG 75 478 478 ARG ARG H . n A 1 76 ASP 76 479 479 ASP ASP H . n A 1 77 ALA 77 480 480 ALA ALA H . n A 1 78 ARG 78 481 481 ARG ARG H . n A 1 79 GLY 79 482 482 GLY GLY H . n A 1 80 ALA 80 483 483 ALA ALA H . n A 1 81 LEU 81 484 484 LEU LEU H . n A 1 82 SER 82 485 485 SER SER H . n A 1 83 ALA 83 486 486 ALA ALA H . n A 1 84 LEU 84 487 487 LEU LEU H . n A 1 85 ARG 85 488 488 ARG ARG H . n A 1 86 GLU 86 489 489 GLU GLU H . n A 1 87 GLU 87 490 490 GLU GLU H . n A 1 88 HIS 88 491 491 HIS HIS H . n A 1 89 ARG 89 492 492 ARG ARG H . n A 1 90 GLU 90 493 493 GLU GLU H . n A 1 91 LYS 91 494 494 LYS LYS H . n A 1 92 LEU 92 495 495 LEU LEU H . n A 1 93 ARG 93 496 496 ARG ARG H . n A 1 94 ARG 94 497 497 ARG ARG H . n A 1 95 ALA 95 498 498 ALA ALA H . n A 1 96 ALA 96 499 499 ALA ALA H . n A 1 97 GLU 97 500 500 GLU GLU H . n A 1 98 GLU 98 501 501 GLU GLU H . n B 2 1 PHE 1 301 301 PHE PHE S . n B 2 2 ILE 2 302 302 ILE ILE S . n B 2 3 ASP 3 303 303 ASP ASP S . n B 2 4 GLU 4 304 304 GLU GLU S . n B 2 5 ASP 5 305 305 ASP ASP S . n B 2 6 LYS 6 306 306 LYS LYS S . n B 2 7 MET 7 307 307 MET MET S . n B 2 8 ASP 8 308 308 ASP ASP S . n B 2 9 GLN 9 309 309 GLN GLN S . n B 2 10 LEU 10 310 310 LEU LEU S . n B 2 11 LEU 11 311 311 LEU LEU S . n B 2 12 GLN 12 312 312 GLN GLN S . n B 2 13 MET 13 313 313 MET MET S . n B 2 14 LEU 14 314 314 LEU LEU S . n B 2 15 GLN 15 315 315 GLN GLN S . n B 2 16 SER 16 316 316 SER SER S . n B 2 17 THR 17 317 317 THR THR S . n B 2 18 ASP 18 318 318 ASP ASP S . n B 2 19 PRO 19 319 319 PRO PRO S . n B 2 20 SER 20 320 320 SER SER S . n B 2 21 ASP 21 321 321 ASP ASP S . n B 2 22 ASP 22 322 322 ASP ASP S . n B 2 23 GLN 23 323 323 GLN GLN S . n B 2 24 PRO 24 324 324 PRO PRO S . n B 2 25 ASP 25 325 325 ASP ASP S . n B 2 26 LEU 26 326 326 LEU LEU S . n B 2 27 PRO 27 327 327 PRO PRO S . n B 2 28 GLU 28 328 328 GLU GLU S . n B 2 29 LEU 29 329 329 LEU LEU S . n B 2 30 LEU 30 330 330 LEU LEU S . n B 2 31 HIS 31 331 331 HIS HIS S . n B 2 32 LEU 32 332 332 LEU LEU S . n B 2 33 GLU 33 333 333 GLU GLU S . n B 2 34 ALA 34 334 334 ALA ALA S . n B 2 35 MET 35 335 335 MET MET S . n B 2 36 CYS 36 336 336 CYS CYS S . n B 2 37 HIS 37 337 337 HIS HIS S . n B 2 38 GLN 38 338 338 GLN GLN S . n B 2 39 MET 39 339 339 MET MET S . n B 2 40 GLY 40 340 340 GLY GLY S . n B 2 41 PRO 41 341 341 PRO PRO S . n B 2 42 LEU 42 342 342 LEU LEU S . n B 2 43 ILE 43 343 343 ILE ILE S . n B 2 44 ASP 44 344 344 ASP ASP S . n B 2 45 GLU 45 345 345 GLU GLU S . n B 2 46 LYS 46 346 346 LYS LYS S . n B 2 47 LEU 47 347 347 LEU LEU S . n B 2 48 GLU 48 348 348 GLU GLU S . n B 2 49 ASP 49 349 349 ASP ASP S . n B 2 50 ILE 50 350 350 ILE ILE S . n B 2 51 ASP 51 351 351 ASP ASP S . n B 2 52 ARG 52 352 352 ARG ARG S . n B 2 53 LYS 53 353 353 LYS LYS S . n B 2 54 HIS 54 354 354 HIS HIS S . n B 2 55 SER 55 355 355 SER SER S . n B 2 56 GLU 56 356 356 GLU GLU S . n B 2 57 LEU 57 357 357 LEU LEU S . n B 2 58 SER 58 358 358 SER SER S . n B 2 59 GLU 59 359 359 GLU GLU S . n B 2 60 LEU 60 360 360 LEU LEU S . n B 2 61 ASN 61 361 361 ASN ASN S . n B 2 62 VAL 62 362 362 VAL VAL S . n B 2 63 LYS 63 363 363 LYS LYS S . n B 2 64 VAL 64 364 364 VAL VAL S . n B 2 65 MET 65 365 365 MET MET S . n B 2 66 GLU 66 366 366 GLU GLU S . n B 2 67 ALA 67 367 367 ALA ALA S . n B 2 68 LEU 68 368 368 LEU LEU S . n B 2 69 SER 69 369 369 SER SER S . n B 2 70 LEU 70 370 370 LEU LEU S . n B 2 71 TYR 71 371 371 TYR TYR S . n B 2 72 THR 72 372 372 THR THR S . n B 2 73 LYS 73 373 373 LYS LYS S . n B 2 74 LEU 74 374 374 LEU LEU S . n B 2 75 MET 75 375 375 MET MET S . n B 2 76 ASN 76 376 376 ASN ASN S . n B 2 77 GLU 77 377 377 GLU GLU S . n C 2 1 PHE 1 301 ? ? ? C . n C 2 2 ILE 2 302 ? ? ? C . n C 2 3 ASP 3 303 ? ? ? C . n C 2 4 GLU 4 304 ? ? ? C . n C 2 5 ASP 5 305 ? ? ? C . n C 2 6 LYS 6 306 ? ? ? C . n C 2 7 MET 7 307 ? ? ? C . n C 2 8 ASP 8 308 ? ? ? C . n C 2 9 GLN 9 309 ? ? ? C . n C 2 10 LEU 10 310 ? ? ? C . n C 2 11 LEU 11 311 ? ? ? C . n C 2 12 GLN 12 312 ? ? ? C . n C 2 13 MET 13 313 ? ? ? C . n C 2 14 LEU 14 314 ? ? ? C . n C 2 15 GLN 15 315 ? ? ? C . n C 2 16 SER 16 316 ? ? ? C . n C 2 17 THR 17 317 ? ? ? C . n C 2 18 ASP 18 318 ? ? ? C . n C 2 19 PRO 19 319 ? ? ? C . n C 2 20 SER 20 320 ? ? ? C . n C 2 21 ASP 21 321 ? ? ? C . n C 2 22 ASP 22 322 ? ? ? C . n C 2 23 GLN 23 323 ? ? ? C . n C 2 24 PRO 24 324 ? ? ? C . n C 2 25 ASP 25 325 ? ? ? C . n C 2 26 LEU 26 326 ? ? ? C . n C 2 27 PRO 27 327 ? ? ? C . n C 2 28 GLU 28 328 ? ? ? C . n C 2 29 LEU 29 329 ? ? ? C . n C 2 30 LEU 30 330 ? ? ? C . n C 2 31 HIS 31 331 ? ? ? C . n C 2 32 LEU 32 332 ? ? ? C . n C 2 33 GLU 33 333 ? ? ? C . n C 2 34 ALA 34 334 ? ? ? C . n C 2 35 MET 35 335 ? ? ? C . n C 2 36 CYS 36 336 ? ? ? C . n C 2 37 HIS 37 337 ? ? ? C . n C 2 38 GLN 38 338 338 GLN GLN C . n C 2 39 MET 39 339 339 MET MET C . n C 2 40 GLY 40 340 340 GLY GLY C . n C 2 41 PRO 41 341 341 PRO PRO C . n C 2 42 LEU 42 342 342 LEU LEU C . n C 2 43 ILE 43 343 343 ILE ILE C . n C 2 44 ASP 44 344 344 ASP ASP C . n C 2 45 GLU 45 345 345 GLU GLU C . n C 2 46 LYS 46 346 346 LYS LYS C . n C 2 47 LEU 47 347 347 LEU LEU C . n C 2 48 GLU 48 348 348 GLU GLU C . n C 2 49 ASP 49 349 349 ASP ASP C . n C 2 50 ILE 50 350 350 ILE ILE C . n C 2 51 ASP 51 351 351 ASP ASP C . n C 2 52 ARG 52 352 352 ARG ARG C . n C 2 53 LYS 53 353 353 LYS LYS C . n C 2 54 HIS 54 354 354 HIS HIS C . n C 2 55 SER 55 355 355 SER SER C . n C 2 56 GLU 56 356 356 GLU GLU C . n C 2 57 LEU 57 357 357 LEU LEU C . n C 2 58 SER 58 358 358 SER SER C . n C 2 59 GLU 59 359 359 GLU GLU C . n C 2 60 LEU 60 360 360 LEU LEU C . n C 2 61 ASN 61 361 361 ASN ASN C . n C 2 62 VAL 62 362 ? ? ? C . n C 2 63 LYS 63 363 ? ? ? C . n C 2 64 VAL 64 364 ? ? ? C . n C 2 65 MET 65 365 ? ? ? C . n C 2 66 GLU 66 366 ? ? ? C . n C 2 67 ALA 67 367 ? ? ? C . n C 2 68 LEU 68 368 ? ? ? C . n C 2 69 SER 69 369 ? ? ? C . n C 2 70 LEU 70 370 ? ? ? C . n C 2 71 TYR 71 371 ? ? ? C . n C 2 72 THR 72 372 ? ? ? C . n C 2 73 LYS 73 373 ? ? ? C . n C 2 74 LEU 74 374 ? ? ? C . n C 2 75 MET 75 375 ? ? ? C . n C 2 76 ASN 76 376 ? ? ? C . n C 2 77 GLU 77 377 ? ? ? C . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4910 ? 1 MORE -42 ? 1 'SSA (A^2)' 13120 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-03-24 2 'Structure model' 1 1 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.pdbx_refine_id 1 ? refined 11.7210 -1.2307 0.2960 0.4824 0.4935 0.4809 -0.0079 -0.0007 0.0024 1.2553 1.6675 1.3544 -0.2475 -0.0839 0.2373 -0.0006 -0.0405 0.1297 0.0351 0.0006 0.0865 -0.1442 -0.1265 -0.0001 'X-RAY DIFFRACTION' 2 ? refined 38.2404 -10.8850 -5.0933 -0.2657 -0.0271 -0.1719 0.0412 0.0305 -0.0316 7.1770 9.4113 16.5089 -1.9763 -3.3252 9.4631 0.3659 -0.9366 0.3484 -0.2178 0.3760 -0.8126 0.4640 1.1166 -0.7418 'X-RAY DIFFRACTION' 3 ? refined 24.0695 -5.8812 10.5153 -0.2188 0.0679 -0.2150 0.0637 0.0263 0.0611 30.7832 10.2200 10.2831 -17.4329 -17.6381 9.9390 -0.3867 -1.0008 -0.2055 0.2712 0.4773 0.1060 0.2631 1.1018 -0.0906 'X-RAY DIFFRACTION' 4 ? refined -18.1886 10.3785 19.5209 -0.1691 0.0688 -0.2158 0.0696 -0.0637 -0.0947 54.5088 8.0465 4.5522 -12.1305 -7.8509 1.5506 0.3096 0.2639 0.3136 -0.3388 -0.3735 0.5712 -0.4477 -1.1198 0.0639 'X-RAY DIFFRACTION' 5 ? refined -3.8524 11.8891 25.7938 -0.1120 -0.2547 -0.0999 0.0008 0.0029 -0.0905 25.9874 4.0723 6.9106 -4.7085 -7.4395 1.6593 0.3557 -0.2058 1.5227 0.1512 -0.0253 -0.4217 -0.4603 -0.0974 -0.3304 'X-RAY DIFFRACTION' 6 ? refined 8.6856 9.8232 12.5348 -0.0691 -0.1562 -0.0377 -0.0009 0.0981 0.1557 31.5938 25.9457 18.2734 -26.9837 -22.6409 21.6736 1.0894 0.8032 1.3192 -0.9176 -0.5902 -0.6129 -1.1870 -0.3699 -0.4992 'X-RAY DIFFRACTION' 7 ? refined 31.2233 -18.4660 -3.2425 0.1068 -0.0902 -0.1641 -0.0003 0.0501 0.0844 14.1657 17.9201 13.9081 -10.6381 -6.1074 9.1428 -0.3599 -0.3643 -1.2397 0.1580 0.3361 0.5641 2.0241 -0.1776 0.0238 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.pdbx_refine_id 1 1 C 64 ? ? C 90 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 H 404 ? ? H 439 ? ? ? ? 'X-RAY DIFFRACTION' 3 3 H 440 ? ? H 472 ? ? ? ? 'X-RAY DIFFRACTION' 4 4 H 473 ? ? H 501 ? ? ? ? 'X-RAY DIFFRACTION' 5 5 S 301 ? ? S 324 ? ? ? ? 'X-RAY DIFFRACTION' 6 6 S 325 ? ? S 359 ? ? ? ? 'X-RAY DIFFRACTION' 7 7 S 360 ? ? S 377 ? ? ? ? 'X-RAY DIFFRACTION' # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.2.0019 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 1 PDB_EXTRACT 3.006 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 2 HKL-2000 . ? ? ? ? 'data collection' ? ? ? 3 XDS . ? ? ? ? 'data reduction' ? ? ? 4 XSCALE . ? ? ? ? 'data scaling' ? ? ? 5 SHARP . ? ? ? ? phasing ? ? ? 6 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 OD2 _pdbx_validate_symm_contact.auth_asym_id_1 H _pdbx_validate_symm_contact.auth_comp_id_1 ASP _pdbx_validate_symm_contact.auth_seq_id_1 472 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 OD2 _pdbx_validate_symm_contact.auth_asym_id_2 H _pdbx_validate_symm_contact.auth_comp_id_2 ASP _pdbx_validate_symm_contact.auth_seq_id_2 479 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 6_555 _pdbx_validate_symm_contact.dist 1.80 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 CD _pdbx_validate_rmsd_bond.auth_asym_id_1 H _pdbx_validate_rmsd_bond.auth_comp_id_1 GLU _pdbx_validate_rmsd_bond.auth_seq_id_1 493 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 OE1 _pdbx_validate_rmsd_bond.auth_asym_id_2 H _pdbx_validate_rmsd_bond.auth_comp_id_2 GLU _pdbx_validate_rmsd_bond.auth_seq_id_2 493 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.349 _pdbx_validate_rmsd_bond.bond_target_value 1.252 _pdbx_validate_rmsd_bond.bond_deviation 0.097 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.011 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 C PHE 301 ? C PHE 1 2 1 Y 1 C ILE 302 ? C ILE 2 3 1 Y 1 C ASP 303 ? C ASP 3 4 1 Y 1 C GLU 304 ? C GLU 4 5 1 Y 1 C ASP 305 ? C ASP 5 6 1 Y 1 C LYS 306 ? C LYS 6 7 1 Y 1 C MET 307 ? C MET 7 8 1 Y 1 C ASP 308 ? C ASP 8 9 1 Y 1 C GLN 309 ? C GLN 9 10 1 Y 1 C LEU 310 ? C LEU 10 11 1 Y 1 C LEU 311 ? C LEU 11 12 1 Y 1 C GLN 312 ? C GLN 12 13 1 Y 1 C MET 313 ? C MET 13 14 1 Y 1 C LEU 314 ? C LEU 14 15 1 Y 1 C GLN 315 ? C GLN 15 16 1 Y 1 C SER 316 ? C SER 16 17 1 Y 1 C THR 317 ? C THR 17 18 1 Y 1 C ASP 318 ? C ASP 18 19 1 Y 1 C PRO 319 ? C PRO 19 20 1 Y 1 C SER 320 ? C SER 20 21 1 Y 1 C ASP 321 ? C ASP 21 22 1 Y 1 C ASP 322 ? C ASP 22 23 1 Y 1 C GLN 323 ? C GLN 23 24 1 Y 1 C PRO 324 ? C PRO 24 25 1 Y 1 C ASP 325 ? C ASP 25 26 1 Y 1 C LEU 326 ? C LEU 26 27 1 Y 1 C PRO 327 ? C PRO 27 28 1 Y 1 C GLU 328 ? C GLU 28 29 1 Y 1 C LEU 329 ? C LEU 29 30 1 Y 1 C LEU 330 ? C LEU 30 31 1 Y 1 C HIS 331 ? C HIS 31 32 1 Y 1 C LEU 332 ? C LEU 32 33 1 Y 1 C GLU 333 ? C GLU 33 34 1 Y 1 C ALA 334 ? C ALA 34 35 1 Y 1 C MET 335 ? C MET 35 36 1 Y 1 C CYS 336 ? C CYS 36 37 1 Y 1 C HIS 337 ? C HIS 37 38 1 Y 1 C VAL 362 ? C VAL 62 39 1 Y 1 C LYS 363 ? C LYS 63 40 1 Y 1 C VAL 364 ? C VAL 64 41 1 Y 1 C MET 365 ? C MET 65 42 1 Y 1 C GLU 366 ? C GLU 66 43 1 Y 1 C ALA 367 ? C ALA 67 44 1 Y 1 C LEU 368 ? C LEU 68 45 1 Y 1 C SER 369 ? C SER 69 46 1 Y 1 C LEU 370 ? C LEU 70 47 1 Y 1 C TYR 371 ? C TYR 71 48 1 Y 1 C THR 372 ? C THR 72 49 1 Y 1 C LYS 373 ? C LYS 73 50 1 Y 1 C LEU 374 ? C LEU 74 51 1 Y 1 C MET 375 ? C MET 75 52 1 Y 1 C ASN 376 ? C ASN 76 53 1 Y 1 C GLU 377 ? C GLU 77 # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 HOH 1 3 3 HOH HOH H . D 3 HOH 2 4 4 HOH HOH H . D 3 HOH 3 7 7 HOH HOH H . D 3 HOH 4 8 8 HOH HOH H . D 3 HOH 5 10 10 HOH HOH H . D 3 HOH 6 11 11 HOH HOH H . D 3 HOH 7 12 12 HOH HOH H . D 3 HOH 8 14 14 HOH HOH H . D 3 HOH 9 16 16 HOH HOH H . D 3 HOH 10 17 17 HOH HOH H . D 3 HOH 11 18 18 HOH HOH H . D 3 HOH 12 19 19 HOH HOH H . D 3 HOH 13 20 20 HOH HOH H . D 3 HOH 14 21 21 HOH HOH H . D 3 HOH 15 22 22 HOH HOH H . D 3 HOH 16 23 23 HOH HOH H . D 3 HOH 17 24 24 HOH HOH H . D 3 HOH 18 26 26 HOH HOH H . D 3 HOH 19 27 27 HOH HOH H . D 3 HOH 20 28 28 HOH HOH H . E 3 HOH 1 1 1 HOH HOH S . E 3 HOH 2 2 2 HOH HOH S . E 3 HOH 3 5 5 HOH HOH S . E 3 HOH 4 9 9 HOH HOH S . E 3 HOH 5 13 13 HOH HOH S . E 3 HOH 6 15 15 HOH HOH S . E 3 HOH 7 25 25 HOH HOH S . F 3 HOH 1 6 6 HOH HOH C . #