HEADER VIRAL PROTEIN 28-OCT-08 3F1J TITLE CRYSTAL STRUCTURE OF THE BORNA DISEASE VIRUS MATRIX PROTEIN (BDV-M) TITLE 2 REVEALS RNA BINDING PROPERTIES COMPND MOL_ID: 1; COMPND 2 MOLECULE: MATRIX PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GP18, P16; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BORNA DISEASE VIRUS; SOURCE 3 ORGANISM_COMMON: BDV; SOURCE 4 ORGANISM_TAXID: 12455; SOURCE 5 GENE: M; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMAL-C2 KEYWDS VIRAL MATRIX PROTEIN, RNA BINDING, MEMBRANE BINDING, VIRUSES, SSRNA KEYWDS 2 NEGATIVE-STRAND VIRUSES, MONONEGAVIRALES; BORNAVIRIDAE, BORNAVIRUS, KEYWDS 3 ALTERNATIVE SPLICING, CYTOPLASM, VIRION, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.NEUMANN,D.LIEBER,S.MEYER,P.DAUTEL,A.KERTH,I.KRAUS,W.GARTEN, AUTHOR 2 M.T.STUBBS REVDAT 4 13-NOV-24 3F1J 1 REMARK REVDAT 3 27-DEC-23 3F1J 1 REMARK LINK REVDAT 2 25-AUG-09 3F1J 1 JRNL REVDAT 1 03-FEB-09 3F1J 0 JRNL AUTH P.NEUMANN,D.LIEBER,S.MEYER,P.DAUTEL,A.KERTH,I.KRAUS, JRNL AUTH 2 W.GARTEN,M.T.STUBBS JRNL TITL CRYSTAL STRUCTURE OF THE BORNA DISEASE VIRUS MATRIX PROTEIN JRNL TITL 2 (BDV-M) REVEALS SSRNA BINDING PROPERTIES JRNL REF PROC.NATL.ACAD.SCI.USA V. 106 3710 2009 JRNL REFN ISSN 0027-8424 JRNL PMID 19237566 JRNL DOI 10.1073/PNAS.0808101106 REMARK 2 REMARK 2 RESOLUTION. 2.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.54 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 11301727.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 7491 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.600 REMARK 3 FREE R VALUE TEST SET COUNT : 570 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.011 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.40 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 831 REMARK 3 BIN R VALUE (WORKING SET) : 0.2750 REMARK 3 BIN FREE R VALUE : 0.2780 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 7.50 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 67 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.034 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1133 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 39 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 67.81 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 61.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.33 REMARK 3 ESD FROM SIGMAA (A) : 0.30 REMARK 3 LOW RESOLUTION CUTOFF (A) : 8.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.42 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.31 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.30 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.880 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.670 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.970 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.180 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.460 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.30 REMARK 3 BSOL : 43.41 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA_REP.TOP REMARK 3 TOPOLOGY FILE 3 : WATER_REP.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3F1J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 31-OCT-08. REMARK 100 THE DEPOSITION ID IS D_1000050029. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-FEB-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : BW7B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9500, 0.97920, 0.97950 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 130 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XSCALE REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7570 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.650 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 7.460 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : 0.09900 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.9700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 7.68 REMARK 200 R MERGE FOR SHELL (I) : 0.67100 REMARK 200 R SYM FOR SHELL (I) : 0.67100 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, DM, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 8000, 0.5M LI2SO4, 0.1M REMARK 280 TRIS/HCL, PH 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 Y,X,-Z REMARK 290 14555 -Y,-X,-Z REMARK 290 15555 Y,-X,Z REMARK 290 16555 -Y,X,Z REMARK 290 17555 X,Z,-Y REMARK 290 18555 -X,Z,Y REMARK 290 19555 -X,-Z,-Y REMARK 290 20555 X,-Z,Y REMARK 290 21555 Z,Y,-X REMARK 290 22555 Z,-Y,X REMARK 290 23555 -Z,Y,X REMARK 290 24555 -Z,-Y,-X REMARK 290 25555 X+1/2,Y+1/2,Z+1/2 REMARK 290 26555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 27555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 28555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 29555 Z+1/2,X+1/2,Y+1/2 REMARK 290 30555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 31555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 32555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 33555 Y+1/2,Z+1/2,X+1/2 REMARK 290 34555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 35555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 36555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 37555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 38555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 39555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 40555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 41555 X+1/2,Z+1/2,-Y+1/2 REMARK 290 42555 -X+1/2,Z+1/2,Y+1/2 REMARK 290 43555 -X+1/2,-Z+1/2,-Y+1/2 REMARK 290 44555 X+1/2,-Z+1/2,Y+1/2 REMARK 290 45555 Z+1/2,Y+1/2,-X+1/2 REMARK 290 46555 Z+1/2,-Y+1/2,X+1/2 REMARK 290 47555 -Z+1/2,Y+1/2,X+1/2 REMARK 290 48555 -Z+1/2,-Y+1/2,-X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 25 1.000000 0.000000 0.000000 71.78500 REMARK 290 SMTRY2 25 0.000000 1.000000 0.000000 71.78500 REMARK 290 SMTRY3 25 0.000000 0.000000 1.000000 71.78500 REMARK 290 SMTRY1 26 -1.000000 0.000000 0.000000 71.78500 REMARK 290 SMTRY2 26 0.000000 -1.000000 0.000000 71.78500 REMARK 290 SMTRY3 26 0.000000 0.000000 1.000000 71.78500 REMARK 290 SMTRY1 27 -1.000000 0.000000 0.000000 71.78500 REMARK 290 SMTRY2 27 0.000000 1.000000 0.000000 71.78500 REMARK 290 SMTRY3 27 0.000000 0.000000 -1.000000 71.78500 REMARK 290 SMTRY1 28 1.000000 0.000000 0.000000 71.78500 REMARK 290 SMTRY2 28 0.000000 -1.000000 0.000000 71.78500 REMARK 290 SMTRY3 28 0.000000 0.000000 -1.000000 71.78500 REMARK 290 SMTRY1 29 0.000000 0.000000 1.000000 71.78500 REMARK 290 SMTRY2 29 1.000000 0.000000 0.000000 71.78500 REMARK 290 SMTRY3 29 0.000000 1.000000 0.000000 71.78500 REMARK 290 SMTRY1 30 0.000000 0.000000 1.000000 71.78500 REMARK 290 SMTRY2 30 -1.000000 0.000000 0.000000 71.78500 REMARK 290 SMTRY3 30 0.000000 -1.000000 0.000000 71.78500 REMARK 290 SMTRY1 31 0.000000 0.000000 -1.000000 71.78500 REMARK 290 SMTRY2 31 -1.000000 0.000000 0.000000 71.78500 REMARK 290 SMTRY3 31 0.000000 1.000000 0.000000 71.78500 REMARK 290 SMTRY1 32 0.000000 0.000000 -1.000000 71.78500 REMARK 290 SMTRY2 32 1.000000 0.000000 0.000000 71.78500 REMARK 290 SMTRY3 32 0.000000 -1.000000 0.000000 71.78500 REMARK 290 SMTRY1 33 0.000000 1.000000 0.000000 71.78500 REMARK 290 SMTRY2 33 0.000000 0.000000 1.000000 71.78500 REMARK 290 SMTRY3 33 1.000000 0.000000 0.000000 71.78500 REMARK 290 SMTRY1 34 0.000000 -1.000000 0.000000 71.78500 REMARK 290 SMTRY2 34 0.000000 0.000000 1.000000 71.78500 REMARK 290 SMTRY3 34 -1.000000 0.000000 0.000000 71.78500 REMARK 290 SMTRY1 35 0.000000 1.000000 0.000000 71.78500 REMARK 290 SMTRY2 35 0.000000 0.000000 -1.000000 71.78500 REMARK 290 SMTRY3 35 -1.000000 0.000000 0.000000 71.78500 REMARK 290 SMTRY1 36 0.000000 -1.000000 0.000000 71.78500 REMARK 290 SMTRY2 36 0.000000 0.000000 -1.000000 71.78500 REMARK 290 SMTRY3 36 1.000000 0.000000 0.000000 71.78500 REMARK 290 SMTRY1 37 0.000000 1.000000 0.000000 71.78500 REMARK 290 SMTRY2 37 1.000000 0.000000 0.000000 71.78500 REMARK 290 SMTRY3 37 0.000000 0.000000 -1.000000 71.78500 REMARK 290 SMTRY1 38 0.000000 -1.000000 0.000000 71.78500 REMARK 290 SMTRY2 38 -1.000000 0.000000 0.000000 71.78500 REMARK 290 SMTRY3 38 0.000000 0.000000 -1.000000 71.78500 REMARK 290 SMTRY1 39 0.000000 1.000000 0.000000 71.78500 REMARK 290 SMTRY2 39 -1.000000 0.000000 0.000000 71.78500 REMARK 290 SMTRY3 39 0.000000 0.000000 1.000000 71.78500 REMARK 290 SMTRY1 40 0.000000 -1.000000 0.000000 71.78500 REMARK 290 SMTRY2 40 1.000000 0.000000 0.000000 71.78500 REMARK 290 SMTRY3 40 0.000000 0.000000 1.000000 71.78500 REMARK 290 SMTRY1 41 1.000000 0.000000 0.000000 71.78500 REMARK 290 SMTRY2 41 0.000000 0.000000 1.000000 71.78500 REMARK 290 SMTRY3 41 0.000000 -1.000000 0.000000 71.78500 REMARK 290 SMTRY1 42 -1.000000 0.000000 0.000000 71.78500 REMARK 290 SMTRY2 42 0.000000 0.000000 1.000000 71.78500 REMARK 290 SMTRY3 42 0.000000 1.000000 0.000000 71.78500 REMARK 290 SMTRY1 43 -1.000000 0.000000 0.000000 71.78500 REMARK 290 SMTRY2 43 0.000000 0.000000 -1.000000 71.78500 REMARK 290 SMTRY3 43 0.000000 -1.000000 0.000000 71.78500 REMARK 290 SMTRY1 44 1.000000 0.000000 0.000000 71.78500 REMARK 290 SMTRY2 44 0.000000 0.000000 -1.000000 71.78500 REMARK 290 SMTRY3 44 0.000000 1.000000 0.000000 71.78500 REMARK 290 SMTRY1 45 0.000000 0.000000 1.000000 71.78500 REMARK 290 SMTRY2 45 0.000000 1.000000 0.000000 71.78500 REMARK 290 SMTRY3 45 -1.000000 0.000000 0.000000 71.78500 REMARK 290 SMTRY1 46 0.000000 0.000000 1.000000 71.78500 REMARK 290 SMTRY2 46 0.000000 -1.000000 0.000000 71.78500 REMARK 290 SMTRY3 46 1.000000 0.000000 0.000000 71.78500 REMARK 290 SMTRY1 47 0.000000 0.000000 -1.000000 71.78500 REMARK 290 SMTRY2 47 0.000000 1.000000 0.000000 71.78500 REMARK 290 SMTRY3 47 1.000000 0.000000 0.000000 71.78500 REMARK 290 SMTRY1 48 0.000000 0.000000 -1.000000 71.78500 REMARK 290 SMTRY2 48 0.000000 -1.000000 0.000000 71.78500 REMARK 290 SMTRY3 48 -1.000000 0.000000 0.000000 71.78500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -142.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 1.000000 0.000000 0.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 S SO4 A 302 LIES ON A SPECIAL POSITION. REMARK 375 S SO4 A 303 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 228 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O2P C5P A 300 O3' C5P A 300 21555 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 28 -88.44 -100.06 REMARK 500 THR A 32 89.70 -69.79 REMARK 500 ASN A 35 -141.53 -147.11 REMARK 500 GLN A 50 82.44 -153.00 REMARK 500 GLN A 50 82.86 -152.98 REMARK 500 ARG A 53 -75.59 -45.48 REMARK 500 ARG A 53 -72.56 -48.10 REMARK 500 GLU A 54 -74.85 -48.06 REMARK 500 GLU A 54 -74.85 -48.04 REMARK 500 LYS A 55 143.69 -32.05 REMARK 500 SER A 71 -22.00 -146.25 REMARK 500 ASP A 95 77.90 11.45 REMARK 500 PHE A 118 19.09 59.18 REMARK 500 SER A 140 40.06 -83.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C5P A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 303 DBREF 3F1J A 1 142 UNP P52637 MATRX_BDV 1 142 SEQRES 1 A 142 MET ASN SER LYS HIS SER TYR VAL GLU LEU LYS ASP LYS SEQRES 2 A 142 VAL ILE VAL PRO GLY TRP PRO THR LEU MSE LEU GLU ILE SEQRES 3 A 142 ASP PHE VAL GLY GLY THR SER ARG ASN GLN PHE LEU ASN SEQRES 4 A 142 ILE PRO PHE LEU SER VAL LYS GLU PRO LEU GLN LEU PRO SEQRES 5 A 142 ARG GLU LYS LYS LEU THR ASP TYR PHE THR ILE ASP VAL SEQRES 6 A 142 GLU PRO ALA GLY HIS SER LEU VAL ASN ILE TYR PHE GLN SEQRES 7 A 142 ILE ASP ASP PHE LEU LEU LEU THR LEU ASN SER LEU SER SEQRES 8 A 142 VAL TYR LYS ASP PRO ILE ARG LYS TYR MSE PHE LEU ARG SEQRES 9 A 142 LEU ASN LYS GLU GLN SER LYS HIS ALA ILE ASN ALA ALA SEQRES 10 A 142 PHE ASN VAL PHE SER TYR ARG LEU ARG ASN ILE GLY VAL SEQRES 11 A 142 GLY PRO LEU GLY PRO ASP ILE ARG SER SER GLY PRO MODRES 3F1J MSE A 23 MET SELENOMETHIONINE MODRES 3F1J MSE A 101 MET SELENOMETHIONINE HET MSE A 23 8 HET MSE A 101 8 HET C5P A 300 21 HET SO4 A 301 5 HET SO4 A 302 5 HET SO4 A 303 5 HETNAM MSE SELENOMETHIONINE HETNAM C5P CYTIDINE-5'-MONOPHOSPHATE HETNAM SO4 SULFATE ION FORMUL 1 MSE 2(C5 H11 N O2 SE) FORMUL 2 C5P C9 H14 N3 O8 P FORMUL 3 SO4 3(O4 S 2-) FORMUL 6 HOH *39(H2 O) HELIX 1 1 LYS A 11 ILE A 15 5 5 HELIX 2 2 LYS A 56 TYR A 60 1 5 HELIX 3 3 ASP A 80 SER A 91 1 12 HELIX 4 4 ASN A 106 ALA A 116 1 11 HELIX 5 5 LEU A 133 SER A 140 1 8 SHEET 1 A 4 VAL A 8 GLU A 9 0 SHEET 2 A 4 TYR A 100 ARG A 104 1 O TYR A 100 N VAL A 8 SHEET 3 A 4 VAL A 73 ILE A 79 -1 N PHE A 77 O MSE A 101 SHEET 4 A 4 PHE A 61 PRO A 67 -1 N GLU A 66 O ASN A 74 SHEET 1 B 3 PHE A 37 SER A 44 0 SHEET 2 B 3 THR A 21 ASP A 27 -1 N ILE A 26 O LEU A 38 SHEET 3 B 3 SER A 122 ILE A 128 -1 O ARG A 126 N MSE A 23 LINK C LEU A 22 N MSE A 23 1555 1555 1.32 LINK C MSE A 23 N LEU A 24 1555 1555 1.33 LINK C TYR A 100 N MSE A 101 1555 1555 1.33 LINK C MSE A 101 N PHE A 102 1555 1555 1.32 SITE 1 AC1 6 GLN A 36 PHE A 37 LYS A 111 HIS A 112 SITE 2 AC1 6 ASN A 115 HOH A 226 SITE 1 AC2 2 ARG A 126 ASN A 127 SITE 1 AC3 2 TYR A 93 HOH A 219 SITE 1 AC4 1 LYS A 55 CRYST1 143.570 143.570 143.570 90.00 90.00 90.00 I 4 3 2 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006965 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006965 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006965 0.00000