HEADER HYDROLASE INHIBITOR/HYDROLASE 28-OCT-08 3F1S TITLE CRYSTAL STRUCTURE OF PROTEIN Z COMPLEXED WITH PROTEIN Z-DEPENDENT TITLE 2 INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN Z-DEPENDENT PROTEASE INHIBITOR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: EGF2 AND PROTEASE DOMAIN; COMPND 5 SYNONYM: PZ-DEPENDENT PROTEASE INHIBITOR, PZI, SERPIN A10; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: VITAMIN K-DEPENDENT PROTEIN Z; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: UNP RESIDUES 125-400; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SERPINA10, UNQ707/PRO1358, ZPI; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PSUMO3; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: PROZ, PZ; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_CELL: HEK293 CELLS; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PCEP4 KEYWDS PZ, ZPI, COMPLEX, SERPIN, PROTEASE INHIBITOR, PROTEASE, GLYCOPROTEIN, KEYWDS 2 SECRETED, SERINE PROTEASE INHIBITOR, BLOOD COAGULATION, CLEAVAGE ON KEYWDS 3 PAIR OF BASIC RESIDUES, EGF-LIKE DOMAIN, GAMMA-CARBOXYGLUTAMIC ACID, KEYWDS 4 HYDROXYLATION, SERINE PROTEASE HOMOLOG, HYDROLASE INHIBITOR- KEYWDS 5 HYDROLASE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.ZHOU REVDAT 4 27-DEC-23 3F1S 1 HETSYN REVDAT 3 29-JUL-20 3F1S 1 COMPND REMARK SEQADV HETNAM REVDAT 3 2 1 LINK SITE REVDAT 2 13-JUL-11 3F1S 1 VERSN REVDAT 1 30-JUN-09 3F1S 0 JRNL AUTH Z.WEI,Y.YAN,R.W.CARRELL,A.ZHOU JRNL TITL CRYSTAL STRUCTURE OF PROTEIN Z-DEPENDENT INHIBITOR COMPLEX JRNL TITL 2 SHOWS HOW PROTEIN Z FUNCTIONS AS A COFACTOR IN THE MEMBRANE JRNL TITL 3 INHIBITION OF FACTOR X. JRNL REF BLOOD 2009 JRNL REFN ESSN 1528-0020 JRNL PMID 19528533 JRNL DOI 10.1182/BLOOD-2009-04-210021 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0042 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.63 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.4 REMARK 3 NUMBER OF REFLECTIONS : 30891 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1640 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1584 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 65.71 REMARK 3 BIN R VALUE (WORKING SET) : 0.3260 REMARK 3 BIN FREE R VALUE SET COUNT : 85 REMARK 3 BIN FREE R VALUE : 0.4130 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5127 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 82 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 29.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.87000 REMARK 3 B22 (A**2) : 0.38000 REMARK 3 B33 (A**2) : 1.49000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.392 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.268 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.192 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 17.653 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.914 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5279 ; 0.006 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3656 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7137 ; 0.946 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8868 ; 0.753 ; 3.003 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 639 ; 5.569 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 233 ;27.290 ;23.433 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 934 ;13.394 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 36 ;12.752 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 794 ; 0.054 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5756 ; 0.003 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1079 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3204 ; 0.305 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1302 ; 0.038 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5184 ; 0.584 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2075 ; 0.802 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1953 ; 1.355 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 39 A 423 REMARK 3 ORIGIN FOR THE GROUP (A): -12.8814 9.9955 -3.3830 REMARK 3 T TENSOR REMARK 3 T11: 0.0735 T22: 0.0149 REMARK 3 T33: 0.1035 T12: -0.0199 REMARK 3 T13: -0.0018 T23: 0.0047 REMARK 3 L TENSOR REMARK 3 L11: 1.5847 L22: 1.1442 REMARK 3 L33: 1.6611 L12: -0.3779 REMARK 3 L13: -0.2559 L23: 0.6593 REMARK 3 S TENSOR REMARK 3 S11: -0.0756 S12: -0.0486 S13: -0.2029 REMARK 3 S21: 0.1252 S22: 0.0476 S23: 0.0604 REMARK 3 S31: 0.2044 S32: -0.0405 S33: 0.0281 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 87 B 360 REMARK 3 ORIGIN FOR THE GROUP (A): -18.9778 29.8913 -32.8486 REMARK 3 T TENSOR REMARK 3 T11: 0.1366 T22: 0.1766 REMARK 3 T33: 0.0598 T12: 0.0477 REMARK 3 T13: 0.0071 T23: 0.0909 REMARK 3 L TENSOR REMARK 3 L11: 4.6636 L22: 2.2856 REMARK 3 L33: 2.8234 L12: -0.6591 REMARK 3 L13: 0.2691 L23: -0.4221 REMARK 3 S TENSOR REMARK 3 S11: 0.2023 S12: 0.7053 S13: 0.3782 REMARK 3 S21: -0.4188 S22: -0.2087 S23: -0.0252 REMARK 3 S31: -0.1268 S32: -0.1699 S33: 0.0063 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 3F1S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 31-OCT-08. REMARK 100 THE DEPOSITION ID IS D_1000050038. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9796 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32582 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 44.630 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.6 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 69.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.56100 REMARK 200 R SYM FOR SHELL (I) : 0.47000 REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20-30% PEG3000, 0.1M CITRATE, PH 7, REMARK 280 EVAPORATION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.28100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.53850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.25700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.53850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.28100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.25700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA B 85 REMARK 465 LYS B 86 REMARK 465 GLU B 139 REMARK 465 LYS B 140 REMARK 465 ARG B 141 REMARK 465 ALA B 142 REMARK 465 PRO B 143 REMARK 465 ASP B 144 REMARK 465 LEU B 145 REMARK 465 GLN B 146 REMARK 465 THR B 195 REMARK 465 GLY B 267 REMARK 465 THR B 268 REMARK 465 ASP B 269 REMARK 465 LEU B 270 REMARK 465 GLY B 271 REMARK 465 ASN B 272 REMARK 465 SER B 273 REMARK 465 HIS B 362 REMARK 465 HIS B 363 REMARK 465 HIS B 364 REMARK 465 HIS B 365 REMARK 465 HIS B 366 REMARK 465 HIS B 367 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 285 CG SD CE REMARK 470 ARG A 354 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 355 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 134 87.81 -68.64 REMARK 500 ARG A 354 75.27 61.41 REMARK 500 LEU A 356 108.16 -59.97 REMARK 500 HIS B 99 -106.10 -99.22 REMARK 500 GLN B 105 -128.55 50.12 REMARK 500 LYS B 123 -49.66 -130.04 REMARK 500 CYS B 131 42.62 -96.98 REMARK 500 GLU B 170 -42.17 -28.68 REMARK 500 ASP B 198 66.13 -152.18 REMARK 500 VAL B 336 42.40 39.51 REMARK 500 REMARK 500 REMARK: NULL DBREF 3F1S A 39 423 UNP Q9UK55 ZPI_HUMAN 60 444 DBREF 3F1S B 85 360 UNP P22891 PROZ_HUMAN 125 400 SEQADV 3F1S ALA B 361 UNP P22891 EXPRESSION TAG SEQADV 3F1S HIS B 362 UNP P22891 EXPRESSION TAG SEQADV 3F1S HIS B 363 UNP P22891 EXPRESSION TAG SEQADV 3F1S HIS B 364 UNP P22891 EXPRESSION TAG SEQADV 3F1S HIS B 365 UNP P22891 EXPRESSION TAG SEQADV 3F1S HIS B 366 UNP P22891 EXPRESSION TAG SEQADV 3F1S HIS B 367 UNP P22891 EXPRESSION TAG SEQRES 1 A 385 ALA SER GLU GLU GLU LYS ALA TRP LEU MET ALA SER ARG SEQRES 2 A 385 GLN GLN LEU ALA LYS GLU THR SER ASN PHE GLY PHE SER SEQRES 3 A 385 LEU LEU ARG LYS ILE SER MET ARG HIS ASP GLY ASN MET SEQRES 4 A 385 VAL PHE SER PRO PHE GLY MET SER LEU ALA MET THR GLY SEQRES 5 A 385 LEU MET LEU GLY ALA THR GLY PRO THR GLU THR GLN ILE SEQRES 6 A 385 LYS ARG GLY LEU HIS LEU GLN ALA LEU LYS PRO THR LYS SEQRES 7 A 385 PRO GLY LEU LEU PRO SER LEU PHE LYS GLY LEU ARG GLU SEQRES 8 A 385 THR LEU SER ARG ASN LEU GLU LEU GLY LEU THR GLN GLY SEQRES 9 A 385 SER PHE ALA PHE ILE HIS LYS ASP PHE ASP VAL LYS GLU SEQRES 10 A 385 THR PHE PHE ASN LEU SER LYS ARG TYR PHE ASP THR GLU SEQRES 11 A 385 CYS VAL PRO MET ASN PHE ARG ASN ALA SER GLN ALA LYS SEQRES 12 A 385 ARG LEU MET ASN HIS TYR ILE ASN LYS GLU THR ARG GLY SEQRES 13 A 385 LYS ILE PRO LYS LEU PHE ASP GLU ILE ASN PRO GLU THR SEQRES 14 A 385 LYS LEU ILE LEU VAL ASP TYR ILE LEU PHE LYS GLY LYS SEQRES 15 A 385 TRP LEU THR PRO PHE ASP PRO VAL PHE THR GLU VAL ASP SEQRES 16 A 385 THR PHE HIS LEU ASP LYS TYR LYS THR ILE LYS VAL PRO SEQRES 17 A 385 MET MET TYR GLY ALA GLY LYS PHE ALA SER THR PHE ASP SEQRES 18 A 385 LYS ASN PHE ARG CYS HIS VAL LEU LYS LEU PRO TYR GLN SEQRES 19 A 385 GLY ASN ALA THR MET LEU VAL VAL LEU MET GLU LYS MET SEQRES 20 A 385 GLY ASP HIS LEU ALA LEU GLU ASP TYR LEU THR THR ASP SEQRES 21 A 385 LEU VAL GLU THR TRP LEU ARG ASN MET LYS THR ARG ASN SEQRES 22 A 385 MET GLU VAL PHE PHE PRO LYS PHE LYS LEU ASP GLN LYS SEQRES 23 A 385 TYR GLU MET HIS GLU LEU LEU ARG GLN MET GLY ILE ARG SEQRES 24 A 385 ARG ILE PHE SER PRO PHE ALA ASP LEU SER GLU LEU SER SEQRES 25 A 385 ALA THR GLY ARG ASN LEU GLN VAL SER ARG VAL LEU GLN SEQRES 26 A 385 ARG THR VAL ILE GLU VAL ASP GLU ARG GLY THR GLU ALA SEQRES 27 A 385 VAL ALA GLY ILE LEU SER GLU ILE THR ALA TYR SER MET SEQRES 28 A 385 PRO PRO VAL ILE LYS VAL ASP ARG PRO PHE HIS PHE MET SEQRES 29 A 385 ILE TYR GLU GLU THR SER GLY MET LEU LEU PHE LEU GLY SEQRES 30 A 385 ARG VAL VAL ASN PRO THR LEU LEU SEQRES 1 B 283 ALA LYS ASN GLU CYS HIS PRO GLU ARG THR ASP GLY CYS SEQRES 2 B 283 GLN HIS PHE CYS LEU PRO GLY GLN GLU SER TYR THR CYS SEQRES 3 B 283 SER CYS ALA GLN GLY TYR ARG LEU GLY GLU ASP HIS LYS SEQRES 4 B 283 GLN CYS VAL PRO HIS ASP GLN CYS ALA CYS GLY VAL LEU SEQRES 5 B 283 THR SER GLU LYS ARG ALA PRO ASP LEU GLN ASP LEU PRO SEQRES 6 B 283 TRP GLN VAL LYS LEU THR ASN SER GLU GLY LYS ASP PHE SEQRES 7 B 283 CYS GLY GLY VAL ILE ILE ARG GLU ASN PHE VAL LEU THR SEQRES 8 B 283 THR ALA LYS CYS SER LEU LEU HIS ARG ASN ILE THR VAL SEQRES 9 B 283 LYS THR TYR PHE ASN ARG THR SER GLN ASP PRO LEU MET SEQRES 10 B 283 ILE LYS ILE THR HIS VAL HIS VAL HIS MET ARG TYR ASP SEQRES 11 B 283 ALA ASP ALA GLY GLU ASN ASP LEU SER LEU LEU GLU LEU SEQRES 12 B 283 GLU TRP PRO ILE GLN CYS PRO GLY ALA GLY LEU PRO VAL SEQRES 13 B 283 CYS THR PRO GLU LYS ASP PHE ALA GLU HIS LEU LEU ILE SEQRES 14 B 283 PRO ARG THR ARG GLY LEU LEU SER GLY TRP ALA ARG ASN SEQRES 15 B 283 GLY THR ASP LEU GLY ASN SER LEU THR THR ARG PRO VAL SEQRES 16 B 283 THR LEU VAL GLU GLY GLU GLU CYS GLY GLN VAL LEU ASN SEQRES 17 B 283 VAL THR VAL THR THR ARG THR TYR CYS GLU ARG SER SER SEQRES 18 B 283 VAL ALA ALA MET HIS TRP MET ASP GLY SER VAL VAL THR SEQRES 19 B 283 ARG GLU HIS ARG GLY SER TRP PHE LEU THR GLY VAL LEU SEQRES 20 B 283 GLY SER GLN PRO VAL GLY GLY GLN ALA HIS MET VAL LEU SEQRES 21 B 283 VAL THR LYS VAL SER ARG TYR SER LEU TRP PHE LYS GLN SEQRES 22 B 283 ILE MET ASN ALA HIS HIS HIS HIS HIS HIS MODRES 3F1S ASN B 193 ASN GLYCOSYLATION SITE HET CL A 1 1 HET EDO A 424 4 HET FLC A 425 13 HET NAG B 1 14 HETNAM CL CHLORIDE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM FLC CITRATE ANION HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN EDO ETHYLENE GLYCOL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 CL CL 1- FORMUL 4 EDO C2 H6 O2 FORMUL 5 FLC C6 H5 O7 3- FORMUL 6 NAG C8 H15 N O6 FORMUL 7 HOH *82(H2 O) HELIX 1 1 SER A 40 HIS A 73 1 34 HELIX 2 2 SER A 80 MET A 92 1 13 HELIX 3 3 GLY A 97 LEU A 107 1 11 HELIX 4 4 GLY A 118 ASN A 134 1 17 HELIX 5 5 LYS A 154 ASP A 166 1 13 HELIX 6 6 ASN A 176 THR A 192 1 17 HELIX 7 7 ASP A 226 THR A 230 5 5 HELIX 8 8 ASP A 287 GLU A 292 1 6 HELIX 9 9 ASP A 293 LEU A 295 5 3 HELIX 10 10 THR A 296 ASN A 306 1 11 HELIX 11 11 MET A 327 MET A 334 1 8 HELIX 12 12 ARG A 337 SER A 341 5 5 HELIX 13 13 THR B 176 LEU B 181 1 6 HELIX 14 14 GLU B 244 LEU B 251 1 8 HELIX 15 15 GLU B 283 ASN B 292 1 10 HELIX 16 16 ALA B 307 TRP B 311 5 5 HELIX 17 17 PRO B 335 GLN B 339 5 5 HELIX 18 18 TYR B 351 ASN B 360 1 10 SHEET 1 A 7 MET A 77 PHE A 79 0 SHEET 2 A 7 LEU A 411 VAL A 417 -1 O ARG A 416 N MET A 77 SHEET 3 A 7 PHE A 399 GLU A 405 -1 N PHE A 401 O GLY A 415 SHEET 4 A 7 ALA A 275 MET A 282 -1 N LEU A 278 O MET A 402 SHEET 5 A 7 CYS A 264 TYR A 271 -1 N TYR A 271 O ALA A 275 SHEET 6 A 7 LYS A 241 ASP A 259 -1 N THR A 257 O VAL A 266 SHEET 7 A 7 GLU A 231 ASP A 238 -1 N ASP A 233 O VAL A 245 SHEET 1 B 8 MET A 77 PHE A 79 0 SHEET 2 B 8 LEU A 411 VAL A 417 -1 O ARG A 416 N MET A 77 SHEET 3 B 8 PHE A 399 GLU A 405 -1 N PHE A 401 O GLY A 415 SHEET 4 B 8 ALA A 275 MET A 282 -1 N LEU A 278 O MET A 402 SHEET 5 B 8 CYS A 264 TYR A 271 -1 N TYR A 271 O ALA A 275 SHEET 6 B 8 LYS A 241 ASP A 259 -1 N THR A 257 O VAL A 266 SHEET 7 B 8 LYS A 308 PRO A 317 -1 O VAL A 314 N GLY A 250 SHEET 8 B 8 VAL A 392 LYS A 394 1 O ILE A 393 N PHE A 315 SHEET 1 C 5 THR A 167 MET A 172 0 SHEET 2 C 5 LEU A 139 HIS A 148 1 N ILE A 147 O MET A 172 SHEET 3 C 5 LEU A 209 LYS A 218 -1 O ILE A 210 N PHE A 146 SHEET 4 C 5 ARG A 360 VAL A 369 1 O LEU A 362 N LEU A 211 SHEET 5 C 5 PHE A 319 GLU A 326 -1 N GLN A 323 O THR A 365 SHEET 1 D 2 TYR B 116 LEU B 118 0 SHEET 2 D 2 CYS B 125 PRO B 127 -1 O VAL B 126 N ARG B 117 SHEET 1 E 7 GLN B 151 THR B 155 0 SHEET 2 E 7 ASP B 161 ARG B 169 -1 O CYS B 163 N LEU B 154 SHEET 3 E 7 PHE B 172 THR B 175 -1 O LEU B 174 N VAL B 166 SHEET 4 E 7 SER B 223 LEU B 227 -1 O LEU B 225 N VAL B 173 SHEET 5 E 7 LEU B 200 VAL B 209 -1 N HIS B 208 O LEU B 224 SHEET 6 E 7 THR B 187 THR B 190 -1 N VAL B 188 O ILE B 202 SHEET 7 E 7 GLN B 151 THR B 155 -1 N THR B 155 O THR B 187 SHEET 1 F 7 GLY B 258 GLY B 262 0 SHEET 2 F 7 THR B 275 VAL B 282 -1 O THR B 275 N GLY B 262 SHEET 3 F 7 THR B 299 ARG B 303 -1 O ARG B 303 N THR B 280 SHEET 4 F 7 MET B 342 LYS B 347 -1 O VAL B 343 N GLU B 302 SHEET 5 F 7 TRP B 325 LEU B 331 -1 N VAL B 330 O THR B 346 SHEET 6 F 7 VAL B 316 GLU B 320 -1 N ARG B 319 O PHE B 326 SHEET 7 F 7 GLY B 258 GLY B 262 -1 N LEU B 259 O THR B 318 SSBOND 1 CYS B 89 CYS B 101 1555 1555 2.04 SSBOND 2 CYS B 97 CYS B 110 1555 1555 2.03 SSBOND 3 CYS B 112 CYS B 125 1555 1555 2.04 SSBOND 4 CYS B 131 CYS B 233 1555 1555 2.04 SSBOND 5 CYS B 133 CYS B 241 1555 1555 2.04 SSBOND 6 CYS B 163 CYS B 179 1555 1555 2.04 SSBOND 7 CYS B 287 CYS B 301 1555 1555 2.01 LINK C1 NAG B 1 ND2 ASN B 193 1555 1555 1.45 CISPEP 1 ARG A 354 ASN A 355 0 -2.25 CISPEP 2 CYS B 233 PRO B 234 0 -2.38 CRYST1 68.562 96.514 117.077 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014585 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010361 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008541 0.00000