data_3F2W # _entry.id 3F2W # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.378 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3F2W pdb_00003f2w 10.2210/pdb3f2w/pdb NDB UR0173 ? ? RCSB RCSB050078 ? ? WWPDB D_1000050078 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3F2Q 'FMN bound, native data set' unspecified PDB 3F2T 'FMN bound, iridium soak' unspecified PDB 3F2X 'FMN bound, cesium soak' unspecified PDB 3F2Y 'FMN bound, manganese soak' unspecified PDB 3F30 'FMN bound, cobalt soak' unspecified PDB 3F4E 'FMN bound, native data set, split RNA' unspecified PDB 3F4G 'Riboflavin bound, native data set, split RNA' unspecified PDB 3F4H 'Roseoflavin bound' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3F2W _pdbx_database_status.recvd_initial_deposition_date 2008-10-30 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Serganov, A.A.' 1 'Huang, L.' 2 # _citation.id primary _citation.title 'Coenzyme recognition and gene regulation by a flavin mononucleotide riboswitch.' _citation.journal_abbrev Nature _citation.journal_volume 458 _citation.page_first 233 _citation.page_last 237 _citation.year 2009 _citation.journal_id_ASTM NATUAS _citation.country UK _citation.journal_id_ISSN 0028-0836 _citation.journal_id_CSD 0006 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19169240 _citation.pdbx_database_id_DOI 10.1038/nature07642 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Serganov, A.' 1 ? primary 'Huang, L.' 2 ? primary 'Patel, D.J.' 3 ? # _cell.entry_id 3F2W _cell.length_a 71.003 _cell.length_b 71.003 _cell.length_c 139.745 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3F2W _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'FMN riboswitch' 36451.418 1 ? ? ? ? 2 non-polymer syn 'FLAVIN MONONUCLEOTIDE' 456.344 1 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 7 ? ? ? ? 4 non-polymer syn 'BARIUM ION' 137.327 16 ? ? ? ? 5 water nat water 18.015 1 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(GTP)GAUCUUCGGGGCAGGGUGAAAUUCCCGACCGGUGGUAUAGUCCACGAAAGUAUUUGCUUUGAUUUGGUGAAAUUC CAAAACCGACAGUAGAGUCUGGAUGAGAGAAGAUU(CCC) ; _entity_poly.pdbx_seq_one_letter_code_can ;GGAUCUUCGGGGCAGGGUGAAAUUCCCGACCGGUGGUAUAGUCCACGAAAGUAUUUGCUUUGAUUUGGUGAAAUUCCAAA ACCGACAGUAGAGUCUGGAUGAGAGAAGAUUC ; _entity_poly.pdbx_strand_id X _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GTP n 1 2 G n 1 3 A n 1 4 U n 1 5 C n 1 6 U n 1 7 U n 1 8 C n 1 9 G n 1 10 G n 1 11 G n 1 12 G n 1 13 C n 1 14 A n 1 15 G n 1 16 G n 1 17 G n 1 18 U n 1 19 G n 1 20 A n 1 21 A n 1 22 A n 1 23 U n 1 24 U n 1 25 C n 1 26 C n 1 27 C n 1 28 G n 1 29 A n 1 30 C n 1 31 C n 1 32 G n 1 33 G n 1 34 U n 1 35 G n 1 36 G n 1 37 U n 1 38 A n 1 39 U n 1 40 A n 1 41 G n 1 42 U n 1 43 C n 1 44 C n 1 45 A n 1 46 C n 1 47 G n 1 48 A n 1 49 A n 1 50 A n 1 51 G n 1 52 U n 1 53 A n 1 54 U n 1 55 U n 1 56 U n 1 57 G n 1 58 C n 1 59 U n 1 60 U n 1 61 U n 1 62 G n 1 63 A n 1 64 U n 1 65 U n 1 66 U n 1 67 G n 1 68 G n 1 69 U n 1 70 G n 1 71 A n 1 72 A n 1 73 A n 1 74 U n 1 75 U n 1 76 C n 1 77 C n 1 78 A n 1 79 A n 1 80 A n 1 81 A n 1 82 C n 1 83 C n 1 84 G n 1 85 A n 1 86 C n 1 87 A n 1 88 G n 1 89 U n 1 90 A n 1 91 G n 1 92 A n 1 93 G n 1 94 U n 1 95 C n 1 96 U n 1 97 G n 1 98 G n 1 99 A n 1 100 U n 1 101 G n 1 102 A n 1 103 G n 1 104 A n 1 105 G n 1 106 A n 1 107 A n 1 108 G n 1 109 A n 1 110 U n 1 111 U n 1 112 CCC n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'In vitro transcribed RNA from the Fucobacterium nucleatum impX gene' # _struct_ref.id 1 _struct_ref.db_name GB _struct_ref.db_code AE009951 _struct_ref.pdbx_db_accession 20095250 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 2495 _struct_ref.pdbx_seq_one_letter_code ;AUCUUCGGGGCAGGGUGAAAUUCCCGACCGGUGGUAUAGUCCACGAAAGUAUUUGCUUUGAUUUGGUGAAAUUCCAAAAC CGACAGUAGAGUCUGGAUGAGAGAAGA ; _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3F2W _struct_ref_seq.pdbx_strand_id X _struct_ref_seq.seq_align_beg 3 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 109 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 20095250 _struct_ref_seq.db_align_beg 2495 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 2601 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 3 _struct_ref_seq.pdbx_auth_seq_align_end 109 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3F2W GTP X 1 ? GB 20095250 ? ? insertion 1 1 1 3F2W G X 2 ? GB 20095250 ? ? insertion 2 2 1 3F2W U X 110 ? GB 20095250 ? ? insertion 110 3 1 3F2W U X 111 ? GB 20095250 ? ? insertion 111 4 1 3F2W CCC X 112 ? GB 20095250 ? ? insertion 112 5 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 BA non-polymer . 'BARIUM ION' ? 'Ba 2' 137.327 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CCC 'RNA linking' n ;CYTIDINE-5'-PHOSPHATE-2',3'-CYCLIC PHOSPHATE ; ? 'C9 H13 N3 O10 P2' 385.161 FMN non-polymer . 'FLAVIN MONONUCLEOTIDE' 'RIBOFLAVIN MONOPHOSPHATE' 'C17 H21 N4 O9 P' 456.344 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GTP non-polymer n "GUANOSINE-5'-TRIPHOSPHATE" ? 'C10 H16 N5 O14 P3' 523.180 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.entry_id 3F2W _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.79 _exptl_crystal.density_percent_sol 55.91 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details ;0.1 M MES-Na pH 6.5 10% PEG 4000 0.1 M MgCl2, VAPOR DIFFUSION, HANGING DROP, temperature 293K ; _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 MES-Na ? ? ? 1 2 1 PEG4000 ? ? ? 1 3 1 MgCl2 ? ? ? 1 4 2 MES-Na ? ? ? 1 5 2 PEG4000 ? ? ? 1 6 2 MgCl2 ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2007-11-15 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.6 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X29A' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X29A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.6 # _reflns.entry_id 3F2W _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 20 _reflns.d_resolution_high 3.45 _reflns.number_obs 5691 _reflns.number_all 5754 _reflns.percent_possible_obs 98.9 _reflns.pdbx_Rmerge_I_obs 0.105 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 22.1 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 9.2 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 3.45 _reflns_shell.d_res_low 3.57 _reflns_shell.percent_possible_all 92.8 _reflns_shell.Rmerge_I_obs 0.578 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.2 _reflns_shell.pdbx_redundancy 4.6 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 556 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3F2W _refine.ls_number_reflns_obs 5385 _refine.ls_number_reflns_all 5449 _refine.pdbx_ls_sigma_I 0 _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.00 _refine.ls_d_res_high 3.45 _refine.ls_percent_reflns_obs 98.83 _refine.ls_R_factor_obs 0.18249 _refine.ls_R_factor_all 0.18249 _refine.ls_R_factor_R_work 0.18089 _refine.ls_R_factor_R_free 0.21738 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.6 _refine.ls_number_reflns_R_free 258 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.955 _refine.correlation_coeff_Fo_to_Fc_free 0.929 _refine.B_iso_mean 110.093 _refine.aniso_B[1][1] -2.61 _refine.aniso_B[2][2] -2.61 _refine.aniso_B[3][3] 3.92 _refine.aniso_B[1][2] -1.31 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 3F2Q _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free 0.511 _refine.overall_SU_ML 0.343 _refine.overall_SU_B 40.683 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 3F2W _refine_analyze.Luzzati_coordinate_error_obs 0.343 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 2353 _refine_hist.pdbx_number_atoms_ligand 54 _refine_hist.number_atoms_solvent 1 _refine_hist.number_atoms_total 2408 _refine_hist.d_res_high 3.45 _refine_hist.d_res_low 20.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.004 0.021 ? 2671 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.043 3.000 ? 4155 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_chiral_restr 0.047 0.200 ? 546 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.003 0.020 ? 1164 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.160 0.200 ? 1018 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.277 0.200 ? 1604 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.137 0.200 ? 63 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined 0.206 0.200 ? 13 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.092 0.200 ? 13 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 0.387 3.000 ? 2984 'X-RAY DIFFRACTION' ? r_scangle_it 0.654 4.500 ? 4155 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 3.45 _refine_ls_shell.d_res_low 3.537 _refine_ls_shell.number_reflns_R_work 359 _refine_ls_shell.R_factor_R_work 0.267 _refine_ls_shell.percent_reflns_obs 92.68 _refine_ls_shell.R_factor_R_free 0.311 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 21 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 380 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3F2W _struct.title 'Crystal structure of the FMn riboswitch bound to FMN, Ba2+ soak.' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3F2W _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'FMN, riboswitch, transcription, barium, RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 3 ? J N N 4 ? K N N 4 ? L N N 4 ? M N N 4 ? N N N 4 ? O N N 4 ? P N N 4 ? Q N N 4 ? R N N 4 ? S N N 4 ? T N N 4 ? U N N 4 ? V N N 4 ? W N N 4 ? X N N 4 ? Y N N 4 ? Z N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GTP 1 "O3'" ? ? ? 1_555 A G 2 P ? ? X GTP 1 X G 2 1_555 ? ? ? ? ? ? ? 1.597 ? ? covale2 covale both ? A U 111 "O3'" ? ? ? 1_555 A CCC 112 P ? ? X U 111 X CCC 112 1_555 ? ? ? ? ? ? ? 1.602 ? ? hydrog1 hydrog ? ? A GTP 1 N1 ? ? ? 1_555 A CCC 112 N3 ? ? X GTP 1 X CCC 112 1_555 ? ? ? ? ? ? 'GTP-CCC PAIR' ? ? ? hydrog2 hydrog ? ? A G 2 N1 ? ? ? 1_555 A U 111 O2 ? ? X G 2 X U 111 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog3 hydrog ? ? A G 2 O6 ? ? ? 1_555 A U 111 N3 ? ? X G 2 X U 111 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog4 hydrog ? ? A U 4 N3 ? ? ? 1_555 A A 109 N1 ? ? X U 4 X A 109 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A U 4 O4 ? ? ? 1_555 A A 109 N6 ? ? X U 4 X A 109 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 5 O2 ? ? ? 1_555 A G 108 N2 ? ? X C 5 X G 108 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog7 hydrog ? ? A U 6 N3 ? ? ? 1_555 A A 107 N1 ? ? X U 6 X A 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A U 6 O4 ? ? ? 1_555 A A 107 N6 ? ? X U 6 X A 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A U 7 N3 ? ? ? 1_555 A A 106 N1 ? ? X U 7 X A 106 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A U 7 O4 ? ? ? 1_555 A A 106 N6 ? ? X U 7 X A 106 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A U 7 N3 ? ? ? 1_555 A A 107 N1 ? ? X U 7 X A 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A U 7 O4 ? ? ? 1_555 A A 107 N6 ? ? X U 7 X A 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 8 N3 ? ? ? 1_555 A G 105 N1 ? ? X C 8 X G 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A C 8 N4 ? ? ? 1_555 A G 105 O6 ? ? X C 8 X G 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A C 8 O2 ? ? ? 1_555 A G 105 N2 ? ? X C 8 X G 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 9 N2 ? ? ? 1_555 A A 104 N7 ? ? X G 9 X A 104 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog17 hydrog ? ? A G 9 N3 ? ? ? 1_555 A A 104 N6 ? ? X G 9 X A 104 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog18 hydrog ? ? A G 10 O6 ? ? ? 1_555 A G 47 N2 ? ? X G 10 X G 47 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog19 hydrog ? ? A G 12 N2 ? ? ? 1_555 A G 93 N3 ? ? X G 12 X G 93 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog20 hydrog ? ? A G 12 N3 ? ? ? 1_555 A G 93 N2 ? ? X G 12 X G 93 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog21 hydrog ? ? A C 13 O2 ? ? ? 1_555 A G 28 N1 ? ? X C 13 X G 28 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog22 hydrog ? ? A A 14 N6 ? ? ? 1_555 A G 28 N3 ? ? X A 14 X G 28 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog23 hydrog ? ? A A 14 N7 ? ? ? 1_555 A G 28 N2 ? ? X A 14 X G 28 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog24 hydrog ? ? A G 15 N1 ? ? ? 1_555 A C 27 N3 ? ? X G 15 X C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 15 N2 ? ? ? 1_555 A C 27 O2 ? ? X G 15 X C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A G 15 O6 ? ? ? 1_555 A C 27 N4 ? ? X G 15 X C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A G 16 N1 ? ? ? 1_555 A C 26 N3 ? ? X G 16 X C 26 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog28 hydrog ? ? A G 17 N1 ? ? ? 1_555 A C 25 N3 ? ? X G 17 X C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A G 17 N2 ? ? ? 1_555 A C 25 O2 ? ? X G 17 X C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G 17 O6 ? ? ? 1_555 A C 25 N4 ? ? X G 17 X C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A U 18 N3 ? ? ? 1_555 A A 22 N7 ? ? X U 18 X A 22 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog32 hydrog ? ? A U 18 O2 ? ? ? 1_555 A A 22 N6 ? ? X U 18 X A 22 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog33 hydrog ? ? A G 19 N2 ? ? ? 1_555 A A 90 N7 ? ? X G 19 X A 90 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog34 hydrog ? ? A G 19 N3 ? ? ? 1_555 A A 90 N6 ? ? X G 19 X A 90 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog35 hydrog ? ? A A 29 N1 ? ? ? 1_555 A U 94 N3 ? ? X A 29 X U 94 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A A 29 N6 ? ? ? 1_555 A U 94 O4 ? ? X A 29 X U 94 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A C 30 O2 ? ? ? 1_555 A G 93 N2 ? ? X C 30 X G 93 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog38 hydrog ? ? A C 31 O2 ? ? ? 1_555 A G 84 N1 ? ? X C 31 X G 84 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog39 hydrog ? ? A G 32 N1 ? ? ? 1_555 A C 83 N3 ? ? X G 32 X C 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A G 32 N2 ? ? ? 1_555 A C 83 O2 ? ? X G 32 X C 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A G 32 O6 ? ? ? 1_555 A C 83 N4 ? ? X G 32 X C 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A G 33 N1 ? ? ? 1_555 A C 46 N3 ? ? X G 33 X C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A G 33 N2 ? ? ? 1_555 A C 46 O2 ? ? X G 33 X C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A G 33 O6 ? ? ? 1_555 A C 46 N4 ? ? X G 33 X C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A G 33 N2 ? ? ? 1_555 A A 104 N3 ? ? X G 33 X A 104 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog46 hydrog ? ? A U 34 N3 ? ? ? 1_555 A A 45 N1 ? ? X U 34 X A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A U 34 O4 ? ? ? 1_555 A A 45 N6 ? ? X U 34 X A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A G 35 N1 ? ? ? 1_555 A C 44 N3 ? ? X G 35 X C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A G 35 N2 ? ? ? 1_555 A C 44 O2 ? ? X G 35 X C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A G 35 O6 ? ? ? 1_555 A C 44 N4 ? ? X G 35 X C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A G 36 N1 ? ? ? 1_555 A C 43 N3 ? ? X G 36 X C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A G 36 N2 ? ? ? 1_555 A C 43 O2 ? ? X G 36 X C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A G 36 O6 ? ? ? 1_555 A C 43 N4 ? ? X G 36 X C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A U 37 N3 ? ? ? 1_555 A A 40 N7 ? ? X U 37 X A 40 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog55 hydrog ? ? A U 37 O2 ? ? ? 1_555 A A 40 N6 ? ? X U 37 X A 40 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog56 hydrog ? ? A A 38 N6 ? ? ? 1_555 A G 70 N3 ? ? X A 38 X G 70 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog57 hydrog ? ? A G 41 N2 ? ? ? 1_555 A A 63 N3 ? ? X G 41 X A 63 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog58 hydrog ? ? A G 41 N1 ? ? ? 1_555 A C 82 N3 ? ? X G 41 X C 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A G 41 N2 ? ? ? 1_555 A C 82 O2 ? ? X G 41 X C 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A G 41 O6 ? ? ? 1_555 A C 82 N4 ? ? X G 41 X C 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A U 42 N3 ? ? ? 1_555 A A 81 N1 ? ? X U 42 X A 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A U 42 O4 ? ? ? 1_555 A A 81 N6 ? ? X U 42 X A 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A A 49 N1 ? ? ? 1_555 A U 60 N3 ? ? X A 49 X U 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A A 49 N6 ? ? ? 1_555 A U 60 O4 ? ? X A 49 X U 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A A 50 N1 ? ? ? 1_555 A U 59 N3 ? ? X A 50 X U 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A A 50 N6 ? ? ? 1_555 A U 59 O4 ? ? X A 50 X U 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A G 51 N1 ? ? ? 1_555 A C 58 N3 ? ? X G 51 X C 58 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog68 hydrog ? ? A U 52 N3 ? ? ? 1_555 A G 57 O6 ? ? X U 52 X G 57 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog69 hydrog ? ? A U 52 O2 ? ? ? 1_555 A G 57 N1 ? ? X U 52 X G 57 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog70 hydrog ? ? A G 62 N2 ? ? ? 1_555 A C 83 O2 ? ? X G 62 X C 83 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog71 hydrog ? ? A G 62 N2 ? ? ? 1_555 A G 84 N3 ? ? X G 62 X G 84 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog72 hydrog ? ? A U 64 N3 ? ? ? 1_555 A A 80 N1 ? ? X U 64 X A 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? A U 64 O4 ? ? ? 1_555 A A 80 N6 ? ? X U 64 X A 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? A U 65 N3 ? ? ? 1_555 A A 79 N1 ? ? X U 65 X A 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? A U 65 O4 ? ? ? 1_555 A A 79 N6 ? ? X U 65 X A 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? A U 66 N3 ? ? ? 1_555 A A 78 N1 ? ? X U 66 X A 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? A U 66 O4 ? ? ? 1_555 A A 78 N6 ? ? X U 66 X A 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? A G 67 N1 ? ? ? 1_555 A C 77 N3 ? ? X G 67 X C 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? A G 67 N2 ? ? ? 1_555 A C 77 O2 ? ? X G 67 X C 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? A G 67 O6 ? ? ? 1_555 A C 77 N4 ? ? X G 67 X C 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? A G 68 N1 ? ? ? 1_555 A C 76 N3 ? ? X G 68 X C 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? A G 68 N2 ? ? ? 1_555 A C 76 O2 ? ? X G 68 X C 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? A G 68 O6 ? ? ? 1_555 A C 76 N4 ? ? X G 68 X C 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? A U 69 O2 ? ? ? 1_555 A A 73 N6 ? ? X U 69 X A 73 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog85 hydrog ? ? A A 85 N6 ? ? ? 1_555 A G 97 O6 ? ? X A 85 X G 97 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog86 hydrog ? ? A A 85 N1 ? ? ? 1_555 A G 98 N1 ? ? X A 85 X G 98 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog87 hydrog ? ? A A 85 N6 ? ? ? 1_555 A G 98 O6 ? ? X A 85 X G 98 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog88 hydrog ? ? A C 86 N3 ? ? ? 1_555 A G 97 N1 ? ? X C 86 X G 97 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? A C 86 N4 ? ? ? 1_555 A G 97 O6 ? ? X C 86 X G 97 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog90 hydrog ? ? A C 86 O2 ? ? ? 1_555 A G 97 N2 ? ? X C 86 X G 97 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog91 hydrog ? ? A A 87 N1 ? ? ? 1_555 A U 96 N3 ? ? X A 87 X U 96 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog92 hydrog ? ? A A 87 N6 ? ? ? 1_555 A U 96 O4 ? ? X A 87 X U 96 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog93 hydrog ? ? A G 88 N1 ? ? ? 1_555 A A 92 N7 ? ? X G 88 X A 92 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog94 hydrog ? ? A G 88 N1 ? ? ? 1_555 A C 95 N3 ? ? X G 88 X C 95 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog95 hydrog ? ? A G 88 N2 ? ? ? 1_555 A C 95 O2 ? ? X G 88 X C 95 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog96 hydrog ? ? A G 88 O6 ? ? ? 1_555 A C 95 N4 ? ? X G 88 X C 95 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog97 hydrog ? ? A U 89 N3 ? ? ? 1_555 A A 92 N7 ? ? X U 89 X A 92 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog98 hydrog ? ? A U 89 O2 ? ? ? 1_555 A A 92 N6 ? ? X U 89 X A 92 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software X FMN 200 ? 11 'BINDING SITE FOR RESIDUE FMN X 200' AC2 Software X MG 309 ? 1 'BINDING SITE FOR RESIDUE MG X 309' AC3 Software X MG 311 ? 1 'BINDING SITE FOR RESIDUE MG X 311' AC4 Software X MG 316 ? 1 'BINDING SITE FOR RESIDUE MG X 316' AC5 Software X BA 401 ? 3 'BINDING SITE FOR RESIDUE BA X 401' AC6 Software X BA 402 ? 4 'BINDING SITE FOR RESIDUE BA X 402' AC7 Software X BA 403 ? 2 'BINDING SITE FOR RESIDUE BA X 403' AC8 Software X BA 404 ? 3 'BINDING SITE FOR RESIDUE BA X 404' AC9 Software X BA 405 ? 1 'BINDING SITE FOR RESIDUE BA X 405' BC1 Software X BA 406 ? 1 'BINDING SITE FOR RESIDUE BA X 406' BC2 Software X BA 408 ? 2 'BINDING SITE FOR RESIDUE BA X 408' BC3 Software X BA 409 ? 1 'BINDING SITE FOR RESIDUE BA X 409' BC4 Software X BA 410 ? 1 'BINDING SITE FOR RESIDUE BA X 410' BC5 Software X BA 412 ? 1 'BINDING SITE FOR RESIDUE BA X 412' BC6 Software X BA 413 ? 3 'BINDING SITE FOR RESIDUE BA X 413' BC7 Software X BA 414 ? 1 'BINDING SITE FOR RESIDUE BA X 414' BC8 Software X BA 415 ? 2 'BINDING SITE FOR RESIDUE BA X 415' BC9 Software X BA 416 ? 3 'BINDING SITE FOR RESIDUE BA X 416' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 11 G A 10 ? G X 10 . ? 1_555 ? 2 AC1 11 G A 11 ? G X 11 . ? 1_555 ? 3 AC1 11 G A 32 ? G X 32 . ? 1_555 ? 4 AC1 11 A A 48 ? A X 48 . ? 1_555 ? 5 AC1 11 A A 49 ? A X 49 . ? 1_555 ? 6 AC1 11 G A 62 ? G X 62 . ? 1_555 ? 7 AC1 11 G A 84 ? G X 84 . ? 1_555 ? 8 AC1 11 A A 85 ? A X 85 . ? 1_555 ? 9 AC1 11 G A 98 ? G X 98 . ? 1_555 ? 10 AC1 11 A A 99 ? A X 99 . ? 1_555 ? 11 AC1 11 BA K . ? BA X 402 . ? 1_555 ? 12 AC2 1 G A 68 ? G X 68 . ? 1_555 ? 13 AC3 1 G A 41 ? G X 41 . ? 1_555 ? 14 AC4 1 G A 91 ? G X 91 . ? 1_555 ? 15 AC5 3 U A 96 ? U X 96 . ? 1_555 ? 16 AC5 3 G A 97 ? G X 97 . ? 1_555 ? 17 AC5 3 BA U . ? BA X 412 . ? 1_555 ? 18 AC6 4 G A 33 ? G X 33 . ? 1_555 ? 19 AC6 4 G A 41 ? G X 41 . ? 1_555 ? 20 AC6 4 G A 62 ? G X 62 . ? 1_555 ? 21 AC6 4 FMN B . ? FMN X 200 . ? 1_555 ? 22 AC7 2 U A 100 ? U X 100 . ? 1_555 ? 23 AC7 2 G A 101 ? G X 101 . ? 1_555 ? 24 AC8 3 G A 9 ? G X 9 . ? 1_555 ? 25 AC8 3 G A 101 ? G X 101 . ? 1_555 ? 26 AC8 3 A A 102 ? A X 102 . ? 1_555 ? 27 AC9 1 GTP A 1 ? GTP X 1 . ? 1_555 ? 28 BC1 1 G A 19 ? G X 19 . ? 1_555 ? 29 BC2 2 G A 16 ? G X 16 . ? 1_555 ? 30 BC2 2 G A 17 ? G X 17 . ? 1_555 ? 31 BC3 1 G A 28 ? G X 28 . ? 1_555 ? 32 BC4 1 G A 93 ? G X 93 . ? 1_555 ? 33 BC5 1 BA J . ? BA X 401 . ? 1_555 ? 34 BC6 3 G A 35 ? G X 35 . ? 1_555 ? 35 BC6 3 G A 36 ? G X 36 . ? 1_555 ? 36 BC6 3 A A 40 ? A X 40 . ? 1_555 ? 37 BC7 1 G A 70 ? G X 70 . ? 1_555 ? 38 BC8 2 G A 51 ? G X 51 . ? 1_555 ? 39 BC8 2 U A 52 ? U X 52 . ? 1_555 ? 40 BC9 3 G A 88 ? G X 88 . ? 1_555 ? 41 BC9 3 U A 89 ? U X 89 . ? 1_555 ? 42 BC9 3 A A 92 ? A X 92 . ? 1_555 ? # _database_PDB_matrix.entry_id 3F2W _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3F2W _atom_sites.fract_transf_matrix[1][1] 0.014084 _atom_sites.fract_transf_matrix[1][2] 0.008131 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016263 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007156 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol BA C MG N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GTP 1 1 1 GTP GTP X . n A 1 2 G 2 2 2 G G X . n A 1 3 A 3 3 3 A A X . n A 1 4 U 4 4 4 U U X . n A 1 5 C 5 5 5 C C X . n A 1 6 U 6 6 6 U U X . n A 1 7 U 7 7 7 U U X . n A 1 8 C 8 8 8 C C X . n A 1 9 G 9 9 9 G G X . n A 1 10 G 10 10 10 G G X . n A 1 11 G 11 11 11 G G X . n A 1 12 G 12 12 12 G G X . n A 1 13 C 13 13 13 C C X . n A 1 14 A 14 14 14 A A X . n A 1 15 G 15 15 15 G G X . n A 1 16 G 16 16 16 G G X . n A 1 17 G 17 17 17 G G X . n A 1 18 U 18 18 18 U U X . n A 1 19 G 19 19 19 G G X . n A 1 20 A 20 20 20 A A X . n A 1 21 A 21 21 21 A A X . n A 1 22 A 22 22 22 A A X . n A 1 23 U 23 23 23 U U X . n A 1 24 U 24 24 24 U U X . n A 1 25 C 25 25 25 C C X . n A 1 26 C 26 26 26 C C X . n A 1 27 C 27 27 27 C C X . n A 1 28 G 28 28 28 G G X . n A 1 29 A 29 29 29 A A X . n A 1 30 C 30 30 30 C C X . n A 1 31 C 31 31 31 C C X . n A 1 32 G 32 32 32 G G X . n A 1 33 G 33 33 33 G G X . n A 1 34 U 34 34 34 U U X . n A 1 35 G 35 35 35 G G X . n A 1 36 G 36 36 36 G G X . n A 1 37 U 37 37 37 U U X . n A 1 38 A 38 38 38 A A X . n A 1 39 U 39 39 39 U U X . n A 1 40 A 40 40 40 A A X . n A 1 41 G 41 41 41 G G X . n A 1 42 U 42 42 42 U U X . n A 1 43 C 43 43 43 C C X . n A 1 44 C 44 44 44 C C X . n A 1 45 A 45 45 45 A A X . n A 1 46 C 46 46 46 C C X . n A 1 47 G 47 47 47 G G X . n A 1 48 A 48 48 48 A A X . n A 1 49 A 49 49 49 A A X . n A 1 50 A 50 50 50 A A X . n A 1 51 G 51 51 51 G G X . n A 1 52 U 52 52 52 U U X . n A 1 53 A 53 53 53 A A X . n A 1 54 U 54 54 ? ? ? X . n A 1 55 U 55 55 ? ? ? X . n A 1 56 U 56 56 ? ? ? X . n A 1 57 G 57 57 57 G G X . n A 1 58 C 58 58 58 C C X . n A 1 59 U 59 59 59 U U X . n A 1 60 U 60 60 60 U U X . n A 1 61 U 61 61 61 U U X . n A 1 62 G 62 62 62 G G X . n A 1 63 A 63 63 63 A A X . n A 1 64 U 64 64 64 U U X . n A 1 65 U 65 65 65 U U X . n A 1 66 U 66 66 66 U U X . n A 1 67 G 67 67 67 G G X . n A 1 68 G 68 68 68 G G X . n A 1 69 U 69 69 69 U U X . n A 1 70 G 70 70 70 G G X . n A 1 71 A 71 71 71 A A X . n A 1 72 A 72 72 72 A A X . n A 1 73 A 73 73 73 A A X . n A 1 74 U 74 74 74 U U X . n A 1 75 U 75 75 75 U U X . n A 1 76 C 76 76 76 C C X . n A 1 77 C 77 77 77 C C X . n A 1 78 A 78 78 78 A A X . n A 1 79 A 79 79 79 A A X . n A 1 80 A 80 80 80 A A X . n A 1 81 A 81 81 81 A A X . n A 1 82 C 82 82 82 C C X . n A 1 83 C 83 83 83 C C X . n A 1 84 G 84 84 84 G G X . n A 1 85 A 85 85 85 A A X . n A 1 86 C 86 86 86 C C X . n A 1 87 A 87 87 87 A A X . n A 1 88 G 88 88 88 G G X . n A 1 89 U 89 89 89 U U X . n A 1 90 A 90 90 90 A A X . n A 1 91 G 91 91 91 G G X . n A 1 92 A 92 92 92 A A X . n A 1 93 G 93 93 93 G G X . n A 1 94 U 94 94 94 U U X . n A 1 95 C 95 95 95 C C X . n A 1 96 U 96 96 96 U U X . n A 1 97 G 97 97 97 G G X . n A 1 98 G 98 98 98 G G X . n A 1 99 A 99 99 99 A A X . n A 1 100 U 100 100 100 U U X . n A 1 101 G 101 101 101 G G X . n A 1 102 A 102 102 102 A A X . n A 1 103 G 103 103 103 G G X . n A 1 104 A 104 104 104 A A X . n A 1 105 G 105 105 105 G G X . n A 1 106 A 106 106 106 A A X . n A 1 107 A 107 107 107 A A X . n A 1 108 G 108 108 108 G G X . n A 1 109 A 109 109 109 A A X . n A 1 110 U 110 110 110 U U X . n A 1 111 U 111 111 111 U U X . n A 1 112 CCC 112 112 112 CCC CCC X . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN 1 200 200 FMN FMN X . C 3 MG 1 302 302 MG MG X . D 3 MG 1 309 309 MG MG X . E 3 MG 1 311 311 MG MG X . F 3 MG 1 313 313 MG MG X . G 3 MG 1 314 314 MG MG X . H 3 MG 1 315 315 MG MG X . I 3 MG 1 316 316 MG MG X . J 4 BA 1 401 401 BA BA X . K 4 BA 1 402 402 BA BA X . L 4 BA 1 403 403 BA BA X . M 4 BA 1 404 404 BA BA X . N 4 BA 1 405 405 BA BA X . O 4 BA 1 406 406 BA BA X . P 4 BA 1 407 407 BA BA X . Q 4 BA 1 408 408 BA BA X . R 4 BA 1 409 409 BA BA X . S 4 BA 1 410 410 BA BA X . T 4 BA 1 411 411 BA BA X . U 4 BA 1 412 412 BA BA X . V 4 BA 1 413 413 BA BA X . W 4 BA 1 414 414 BA BA X . X 4 BA 1 415 415 BA BA X . Y 4 BA 1 416 416 BA BA X . Z 5 HOH 1 500 500 HOH HOH X . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A GTP 1 X GTP 1 ? G "GUANOSINE-5'-TRIPHOSPHATE" 2 A CCC 112 X CCC 112 ? C ? # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-01-27 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2023-09-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Refinement description' 3 2 'Structure model' 'Version format compliance' 4 3 'Structure model' 'Data collection' 5 3 'Structure model' 'Database references' 6 3 'Structure model' 'Derived calculations' 7 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' struct_conn 6 3 'Structure model' struct_ref_seq_dif 7 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 3 'Structure model' '_struct_ref_seq_dif.details' 5 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 18.5045 30.3660 15.5021 -0.3727 -0.0927 0.2934 -0.0408 0.0741 0.0019 9.2031 1.8652 2.0355 0.7382 0.8018 0.0353 0.2089 -0.0837 -0.1252 0.0077 -2.0526 0.5486 -0.1872 0.1837 -0.5945 'X-RAY DIFFRACTION' 2 ? refined 44.9419 42.4521 9.1412 -0.4546 -0.1044 -0.2734 -0.0890 0.0964 -0.1393 10.2192 1.8408 5.1677 -1.0334 -0.8870 -0.9087 0.1843 -0.3457 0.1614 0.5813 -0.7361 -0.2194 -0.2488 -0.1646 0.7462 'X-RAY DIFFRACTION' 3 ? refined 17.3495 47.6858 17.4565 -0.3856 -0.1337 -0.3193 0.1027 0.1606 -0.0881 3.2039 3.3640 5.6342 2.1977 0.3607 -2.3347 0.1177 0.1035 -0.2212 -0.4614 -0.0573 0.4351 0.7761 -0.5093 -0.6140 'X-RAY DIFFRACTION' 4 ? refined 22.1357 33.4764 35.0469 0.5777 0.1885 0.2175 -0.0580 0.0441 0.3560 11.8563 5.9221 8.5756 4.8018 -8.7706 -1.9035 0.1826 -0.4489 0.2662 -1.9251 -1.1013 1.8328 1.7363 -1.1436 0.2758 'X-RAY DIFFRACTION' 5 ? refined 22.4772 60.3776 14.7573 -0.0646 -0.3079 -0.3505 0.1187 0.1840 -0.1462 8.5759 7.3064 3.2946 -2.0587 3.0166 -0.9942 -0.5811 0.3549 0.2262 -0.3266 1.1254 0.1306 0.8839 -1.1412 -0.4555 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 X 1 X 9 ? . . . . ? 'X-RAY DIFFRACTION' 2 1 X 85 X 112 ? . . . . ? 'X-RAY DIFFRACTION' 3 2 X 10 X 30 ? . . . . ? 'X-RAY DIFFRACTION' 4 3 X 31 X 48 ? . . . . ? 'X-RAY DIFFRACTION' 5 4 X 49 X 60 ? . . . . ? 'X-RAY DIFFRACTION' 6 5 X 61 X 84 ? . . . . ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CBASS 'data collection' . ? 1 MOLREP phasing . ? 2 REFMAC refinement 5.2.0019 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 X U 54 ? A U 54 2 1 Y 1 X U 55 ? A U 55 3 1 Y 1 X U 56 ? A U 56 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 BA BA BA N N 38 C OP3 O N N 39 C P P N N 40 C OP1 O N N 41 C OP2 O N N 42 C "O5'" O N N 43 C "C5'" C N N 44 C "C4'" C N R 45 C "O4'" O N N 46 C "C3'" C N S 47 C "O3'" O N N 48 C "C2'" C N R 49 C "O2'" O N N 50 C "C1'" C N R 51 C N1 N N N 52 C C2 C N N 53 C O2 O N N 54 C N3 N N N 55 C C4 C N N 56 C N4 N N N 57 C C5 C N N 58 C C6 C N N 59 C HOP3 H N N 60 C HOP2 H N N 61 C "H5'" H N N 62 C "H5''" H N N 63 C "H4'" H N N 64 C "H3'" H N N 65 C "HO3'" H N N 66 C "H2'" H N N 67 C "HO2'" H N N 68 C "H1'" H N N 69 C H41 H N N 70 C H42 H N N 71 C H5 H N N 72 C H6 H N N 73 CCC PC P N S 74 CCC O1C O N N 75 CCC O2C O N N 76 CCC P P N N 77 CCC OP1 O N N 78 CCC OP2 O N N 79 CCC OP3 O N N 80 CCC "O5'" O N N 81 CCC "C5'" C N N 82 CCC "C4'" C N R 83 CCC "O4'" O N N 84 CCC "C3'" C N R 85 CCC "O3'" O N N 86 CCC "C2'" C N R 87 CCC "O2'" O N N 88 CCC "C1'" C N R 89 CCC N1 N N N 90 CCC C2 C N N 91 CCC O2 O N N 92 CCC N3 N N N 93 CCC C4 C N N 94 CCC N4 N N N 95 CCC C5 C N N 96 CCC C6 C N N 97 CCC HOC2 H N N 98 CCC HOP2 H N N 99 CCC HOP3 H N N 100 CCC "H5'" H N N 101 CCC "H5''" H N N 102 CCC "H4'" H N N 103 CCC "H3'" H N N 104 CCC "H2'" H N N 105 CCC "H1'" H N N 106 CCC H41 H N N 107 CCC H42 H N N 108 CCC H5 H N N 109 CCC H6 H N N 110 FMN N1 N N N 111 FMN C2 C N N 112 FMN O2 O N N 113 FMN N3 N N N 114 FMN C4 C N N 115 FMN O4 O N N 116 FMN C4A C N N 117 FMN N5 N N N 118 FMN C5A C Y N 119 FMN C6 C Y N 120 FMN C7 C Y N 121 FMN C7M C N N 122 FMN C8 C Y N 123 FMN C8M C N N 124 FMN C9 C Y N 125 FMN C9A C Y N 126 FMN N10 N N N 127 FMN C10 C N N 128 FMN "C1'" C N N 129 FMN "C2'" C N S 130 FMN "O2'" O N N 131 FMN "C3'" C N S 132 FMN "O3'" O N N 133 FMN "C4'" C N R 134 FMN "O4'" O N N 135 FMN "C5'" C N N 136 FMN "O5'" O N N 137 FMN P P N N 138 FMN O1P O N N 139 FMN O2P O N N 140 FMN O3P O N N 141 FMN HN3 H N N 142 FMN H6 H N N 143 FMN HM71 H N N 144 FMN HM72 H N N 145 FMN HM73 H N N 146 FMN HM81 H N N 147 FMN HM82 H N N 148 FMN HM83 H N N 149 FMN H9 H N N 150 FMN "H1'1" H N N 151 FMN "H1'2" H N N 152 FMN "H2'" H N N 153 FMN "HO2'" H N N 154 FMN "H3'" H N N 155 FMN "HO3'" H N N 156 FMN "H4'" H N N 157 FMN "HO4'" H N N 158 FMN "H5'1" H N N 159 FMN "H5'2" H N N 160 FMN HOP2 H N N 161 FMN HOP3 H N N 162 G OP3 O N N 163 G P P N N 164 G OP1 O N N 165 G OP2 O N N 166 G "O5'" O N N 167 G "C5'" C N N 168 G "C4'" C N R 169 G "O4'" O N N 170 G "C3'" C N S 171 G "O3'" O N N 172 G "C2'" C N R 173 G "O2'" O N N 174 G "C1'" C N R 175 G N9 N Y N 176 G C8 C Y N 177 G N7 N Y N 178 G C5 C Y N 179 G C6 C N N 180 G O6 O N N 181 G N1 N N N 182 G C2 C N N 183 G N2 N N N 184 G N3 N N N 185 G C4 C Y N 186 G HOP3 H N N 187 G HOP2 H N N 188 G "H5'" H N N 189 G "H5''" H N N 190 G "H4'" H N N 191 G "H3'" H N N 192 G "HO3'" H N N 193 G "H2'" H N N 194 G "HO2'" H N N 195 G "H1'" H N N 196 G H8 H N N 197 G H1 H N N 198 G H21 H N N 199 G H22 H N N 200 GTP PG P N N 201 GTP O1G O N N 202 GTP O2G O N N 203 GTP O3G O N N 204 GTP O3B O N N 205 GTP PB P N N 206 GTP O1B O N N 207 GTP O2B O N N 208 GTP O3A O N N 209 GTP PA P N N 210 GTP O1A O N N 211 GTP O2A O N N 212 GTP "O5'" O N N 213 GTP "C5'" C N N 214 GTP "C4'" C N R 215 GTP "O4'" O N N 216 GTP "C3'" C N S 217 GTP "O3'" O N N 218 GTP "C2'" C N R 219 GTP "O2'" O N N 220 GTP "C1'" C N R 221 GTP N9 N Y N 222 GTP C8 C Y N 223 GTP N7 N Y N 224 GTP C5 C Y N 225 GTP C6 C N N 226 GTP O6 O N N 227 GTP N1 N N N 228 GTP C2 C N N 229 GTP N2 N N N 230 GTP N3 N N N 231 GTP C4 C Y N 232 GTP HOG2 H N N 233 GTP HOG3 H N N 234 GTP HOB2 H N N 235 GTP HOA2 H N N 236 GTP "H5'" H N N 237 GTP "H5''" H N N 238 GTP "H4'" H N N 239 GTP "H3'" H N N 240 GTP "HO3'" H N N 241 GTP "H2'" H N N 242 GTP "HO2'" H N N 243 GTP "H1'" H N N 244 GTP H8 H N N 245 GTP HN1 H N N 246 GTP HN21 H N N 247 GTP HN22 H N N 248 HOH O O N N 249 HOH H1 H N N 250 HOH H2 H N N 251 MG MG MG N N 252 U OP3 O N N 253 U P P N N 254 U OP1 O N N 255 U OP2 O N N 256 U "O5'" O N N 257 U "C5'" C N N 258 U "C4'" C N R 259 U "O4'" O N N 260 U "C3'" C N S 261 U "O3'" O N N 262 U "C2'" C N R 263 U "O2'" O N N 264 U "C1'" C N R 265 U N1 N N N 266 U C2 C N N 267 U O2 O N N 268 U N3 N N N 269 U C4 C N N 270 U O4 O N N 271 U C5 C N N 272 U C6 C N N 273 U HOP3 H N N 274 U HOP2 H N N 275 U "H5'" H N N 276 U "H5''" H N N 277 U "H4'" H N N 278 U "H3'" H N N 279 U "HO3'" H N N 280 U "H2'" H N N 281 U "HO2'" H N N 282 U "H1'" H N N 283 U H3 H N N 284 U H5 H N N 285 U H6 H N N 286 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 CCC PC O1C doub N N 76 CCC PC O2C sing N N 77 CCC PC "O3'" sing N N 78 CCC PC "O2'" sing N N 79 CCC O2C HOC2 sing N N 80 CCC P OP1 doub N N 81 CCC P OP2 sing N N 82 CCC P OP3 sing N N 83 CCC P "O5'" sing N N 84 CCC OP2 HOP2 sing N N 85 CCC OP3 HOP3 sing N N 86 CCC "O5'" "C5'" sing N N 87 CCC "C5'" "C4'" sing N N 88 CCC "C5'" "H5'" sing N N 89 CCC "C5'" "H5''" sing N N 90 CCC "C4'" "O4'" sing N N 91 CCC "C4'" "C3'" sing N N 92 CCC "C4'" "H4'" sing N N 93 CCC "O4'" "C1'" sing N N 94 CCC "C3'" "O3'" sing N N 95 CCC "C3'" "C2'" sing N N 96 CCC "C3'" "H3'" sing N N 97 CCC "C2'" "O2'" sing N N 98 CCC "C2'" "C1'" sing N N 99 CCC "C2'" "H2'" sing N N 100 CCC "C1'" N1 sing N N 101 CCC "C1'" "H1'" sing N N 102 CCC N1 C2 sing N N 103 CCC N1 C6 sing N N 104 CCC C2 O2 doub N N 105 CCC C2 N3 sing N N 106 CCC N3 C4 doub N N 107 CCC C4 N4 sing N N 108 CCC C4 C5 sing N N 109 CCC N4 H41 sing N N 110 CCC N4 H42 sing N N 111 CCC C5 C6 doub N N 112 CCC C5 H5 sing N N 113 CCC C6 H6 sing N N 114 FMN N1 C2 sing N N 115 FMN N1 C10 doub N N 116 FMN C2 O2 doub N N 117 FMN C2 N3 sing N N 118 FMN N3 C4 sing N N 119 FMN N3 HN3 sing N N 120 FMN C4 O4 doub N N 121 FMN C4 C4A sing N N 122 FMN C4A N5 doub N N 123 FMN C4A C10 sing N N 124 FMN N5 C5A sing N N 125 FMN C5A C6 doub Y N 126 FMN C5A C9A sing Y N 127 FMN C6 C7 sing Y N 128 FMN C6 H6 sing N N 129 FMN C7 C7M sing N N 130 FMN C7 C8 doub Y N 131 FMN C7M HM71 sing N N 132 FMN C7M HM72 sing N N 133 FMN C7M HM73 sing N N 134 FMN C8 C8M sing N N 135 FMN C8 C9 sing Y N 136 FMN C8M HM81 sing N N 137 FMN C8M HM82 sing N N 138 FMN C8M HM83 sing N N 139 FMN C9 C9A doub Y N 140 FMN C9 H9 sing N N 141 FMN C9A N10 sing N N 142 FMN N10 C10 sing N N 143 FMN N10 "C1'" sing N N 144 FMN "C1'" "C2'" sing N N 145 FMN "C1'" "H1'1" sing N N 146 FMN "C1'" "H1'2" sing N N 147 FMN "C2'" "O2'" sing N N 148 FMN "C2'" "C3'" sing N N 149 FMN "C2'" "H2'" sing N N 150 FMN "O2'" "HO2'" sing N N 151 FMN "C3'" "O3'" sing N N 152 FMN "C3'" "C4'" sing N N 153 FMN "C3'" "H3'" sing N N 154 FMN "O3'" "HO3'" sing N N 155 FMN "C4'" "O4'" sing N N 156 FMN "C4'" "C5'" sing N N 157 FMN "C4'" "H4'" sing N N 158 FMN "O4'" "HO4'" sing N N 159 FMN "C5'" "O5'" sing N N 160 FMN "C5'" "H5'1" sing N N 161 FMN "C5'" "H5'2" sing N N 162 FMN "O5'" P sing N N 163 FMN P O1P doub N N 164 FMN P O2P sing N N 165 FMN P O3P sing N N 166 FMN O2P HOP2 sing N N 167 FMN O3P HOP3 sing N N 168 G OP3 P sing N N 169 G OP3 HOP3 sing N N 170 G P OP1 doub N N 171 G P OP2 sing N N 172 G P "O5'" sing N N 173 G OP2 HOP2 sing N N 174 G "O5'" "C5'" sing N N 175 G "C5'" "C4'" sing N N 176 G "C5'" "H5'" sing N N 177 G "C5'" "H5''" sing N N 178 G "C4'" "O4'" sing N N 179 G "C4'" "C3'" sing N N 180 G "C4'" "H4'" sing N N 181 G "O4'" "C1'" sing N N 182 G "C3'" "O3'" sing N N 183 G "C3'" "C2'" sing N N 184 G "C3'" "H3'" sing N N 185 G "O3'" "HO3'" sing N N 186 G "C2'" "O2'" sing N N 187 G "C2'" "C1'" sing N N 188 G "C2'" "H2'" sing N N 189 G "O2'" "HO2'" sing N N 190 G "C1'" N9 sing N N 191 G "C1'" "H1'" sing N N 192 G N9 C8 sing Y N 193 G N9 C4 sing Y N 194 G C8 N7 doub Y N 195 G C8 H8 sing N N 196 G N7 C5 sing Y N 197 G C5 C6 sing N N 198 G C5 C4 doub Y N 199 G C6 O6 doub N N 200 G C6 N1 sing N N 201 G N1 C2 sing N N 202 G N1 H1 sing N N 203 G C2 N2 sing N N 204 G C2 N3 doub N N 205 G N2 H21 sing N N 206 G N2 H22 sing N N 207 G N3 C4 sing N N 208 GTP PG O1G doub N N 209 GTP PG O2G sing N N 210 GTP PG O3G sing N N 211 GTP PG O3B sing N N 212 GTP O2G HOG2 sing N N 213 GTP O3G HOG3 sing N N 214 GTP O3B PB sing N N 215 GTP PB O1B doub N N 216 GTP PB O2B sing N N 217 GTP PB O3A sing N N 218 GTP O2B HOB2 sing N N 219 GTP O3A PA sing N N 220 GTP PA O1A doub N N 221 GTP PA O2A sing N N 222 GTP PA "O5'" sing N N 223 GTP O2A HOA2 sing N N 224 GTP "O5'" "C5'" sing N N 225 GTP "C5'" "C4'" sing N N 226 GTP "C5'" "H5'" sing N N 227 GTP "C5'" "H5''" sing N N 228 GTP "C4'" "O4'" sing N N 229 GTP "C4'" "C3'" sing N N 230 GTP "C4'" "H4'" sing N N 231 GTP "O4'" "C1'" sing N N 232 GTP "C3'" "O3'" sing N N 233 GTP "C3'" "C2'" sing N N 234 GTP "C3'" "H3'" sing N N 235 GTP "O3'" "HO3'" sing N N 236 GTP "C2'" "O2'" sing N N 237 GTP "C2'" "C1'" sing N N 238 GTP "C2'" "H2'" sing N N 239 GTP "O2'" "HO2'" sing N N 240 GTP "C1'" N9 sing N N 241 GTP "C1'" "H1'" sing N N 242 GTP N9 C8 sing Y N 243 GTP N9 C4 sing Y N 244 GTP C8 N7 doub Y N 245 GTP C8 H8 sing N N 246 GTP N7 C5 sing Y N 247 GTP C5 C6 sing N N 248 GTP C5 C4 doub Y N 249 GTP C6 O6 doub N N 250 GTP C6 N1 sing N N 251 GTP N1 C2 sing N N 252 GTP N1 HN1 sing N N 253 GTP C2 N2 sing N N 254 GTP C2 N3 doub N N 255 GTP N2 HN21 sing N N 256 GTP N2 HN22 sing N N 257 GTP N3 C4 sing N N 258 HOH O H1 sing N N 259 HOH O H2 sing N N 260 U OP3 P sing N N 261 U OP3 HOP3 sing N N 262 U P OP1 doub N N 263 U P OP2 sing N N 264 U P "O5'" sing N N 265 U OP2 HOP2 sing N N 266 U "O5'" "C5'" sing N N 267 U "C5'" "C4'" sing N N 268 U "C5'" "H5'" sing N N 269 U "C5'" "H5''" sing N N 270 U "C4'" "O4'" sing N N 271 U "C4'" "C3'" sing N N 272 U "C4'" "H4'" sing N N 273 U "O4'" "C1'" sing N N 274 U "C3'" "O3'" sing N N 275 U "C3'" "C2'" sing N N 276 U "C3'" "H3'" sing N N 277 U "O3'" "HO3'" sing N N 278 U "C2'" "O2'" sing N N 279 U "C2'" "C1'" sing N N 280 U "C2'" "H2'" sing N N 281 U "O2'" "HO2'" sing N N 282 U "C1'" N1 sing N N 283 U "C1'" "H1'" sing N N 284 U N1 C2 sing N N 285 U N1 C6 sing N N 286 U C2 O2 doub N N 287 U C2 N3 sing N N 288 U N3 C4 sing N N 289 U N3 H3 sing N N 290 U C4 O4 doub N N 291 U C4 C5 sing N N 292 U C5 C6 doub N N 293 U C5 H5 sing N N 294 U C6 H6 sing N N 295 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3F2W 'double helix' 3F2W 'a-form double helix' 3F2W 'hairpin loop' 3F2W 'bulge loop' 3F2W 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A GTP 1 1_555 A CCC 112 1_555 0.632 0.409 -0.418 -1.300 -15.900 19.007 1 X_GTP1:CCC112_X X 1 ? X 112 ? ? 1 1 A G 2 1_555 A U 111 1_555 -1.908 -0.332 0.386 4.175 -20.445 8.091 2 X_G2:U111_X X 2 ? X 111 ? 28 1 1 A U 4 1_555 A A 109 1_555 0.443 -0.140 0.499 -4.141 -14.351 -1.862 3 X_U4:A109_X X 4 ? X 109 ? 20 1 1 A C 5 1_555 A G 108 1_555 -0.255 0.634 0.554 5.815 -19.648 14.315 4 X_C5:G108_X X 5 ? X 108 ? ? 1 1 A U 6 1_555 A A 107 1_555 0.918 0.059 0.546 4.254 -14.198 -0.852 5 X_U6:A107_X X 6 ? X 107 ? 20 1 1 A U 7 1_555 A A 106 1_555 -1.023 -0.109 -1.594 29.340 -3.556 -19.886 6 X_U7:A106_X X 7 ? X 106 ? 20 1 1 A C 8 1_555 A G 105 1_555 -0.196 -0.098 0.780 -1.530 -12.923 2.742 7 X_C8:G105_X X 8 ? X 105 ? 19 1 1 A G 9 1_555 A A 104 1_555 6.677 -4.076 -0.067 -14.049 -40.909 -6.593 8 X_G9:A104_X X 9 ? X 104 ? 11 10 1 A G 10 1_555 A G 47 1_555 -5.197 -1.345 0.948 29.232 -16.546 66.506 9 X_G10:G47_X X 10 ? X 47 ? ? ? 1 A G 33 1_555 A C 46 1_555 -0.246 -0.097 0.192 4.669 -7.977 3.154 10 X_G33:C46_X X 33 ? X 46 ? 19 1 1 A U 34 1_555 A A 45 1_555 0.190 -0.227 -0.324 10.897 -15.074 7.188 11 X_U34:A45_X X 34 ? X 45 ? 20 1 1 A G 35 1_555 A C 44 1_555 0.660 -0.143 -0.397 -14.581 -14.338 0.210 12 X_G35:C44_X X 35 ? X 44 ? 19 1 1 A G 36 1_555 A C 43 1_555 0.379 -0.167 -0.086 -24.470 -19.692 1.298 13 X_G36:C43_X X 36 ? X 43 ? 19 1 1 A U 37 1_555 A A 40 1_555 4.275 -2.606 0.191 -1.224 10.749 -94.996 14 X_U37:A40_X X 37 ? X 40 ? 24 4 1 A A 38 1_555 A G 70 1_555 -7.056 -3.872 0.478 -20.913 27.741 7.408 15 X_A38:G70_X X 38 ? X 70 ? ? ? 1 A A 73 1_555 A U 69 1_555 -4.483 -1.791 -0.107 -8.527 10.722 -79.986 16 X_A73:U69_X X 73 ? X 69 ? ? ? 1 A C 76 1_555 A G 68 1_555 -0.936 -0.043 0.346 12.007 -8.695 -0.307 17 X_C76:G68_X X 76 ? X 68 ? 19 1 1 A C 77 1_555 A G 67 1_555 0.563 -0.361 -0.075 11.089 -16.768 2.424 18 X_C77:G67_X X 77 ? X 67 ? 19 1 1 A A 78 1_555 A U 66 1_555 -0.342 -0.181 -0.013 -7.959 -6.072 -1.394 19 X_A78:U66_X X 78 ? X 66 ? 20 1 1 A A 79 1_555 A U 65 1_555 0.124 0.153 0.072 -2.559 -12.816 6.727 20 X_A79:U65_X X 79 ? X 65 ? 20 1 1 A A 80 1_555 A U 64 1_555 0.190 -0.210 0.072 2.805 0.446 7.332 21 X_A80:U64_X X 80 ? X 64 ? 20 1 1 A A 81 1_555 A U 42 1_555 -0.134 -0.244 -0.767 -11.537 -11.400 -4.305 22 X_A81:U42_X X 81 ? X 42 ? 20 1 1 A C 82 1_555 A G 41 1_555 -0.170 -0.097 0.119 0.402 -22.044 3.487 23 X_C82:G41_X X 82 ? X 41 ? 19 1 1 A C 83 1_555 A G 32 1_555 0.223 -0.040 0.706 -16.373 -10.285 0.537 24 X_C83:G32_X X 83 ? X 32 ? 19 1 1 A G 84 1_555 A C 31 1_555 -0.742 0.033 0.524 10.342 -25.236 6.258 25 X_G84:C31_X X 84 ? X 31 ? ? 1 1 A G 93 1_555 A C 30 1_555 -0.280 0.000 0.724 0.343 -27.846 4.876 26 X_G93:C30_X X 93 ? X 30 ? ? 1 1 A U 94 1_555 A A 29 1_555 0.006 -0.077 0.043 8.109 -12.043 2.130 27 X_U94:A29_X X 94 ? X 29 ? 20 1 1 A C 13 1_555 A G 28 1_555 3.521 0.672 0.451 -8.111 -13.089 47.643 28 X_C13:G28_X X 13 ? X 28 ? ? 5 1 A G 15 1_555 A C 27 1_555 -0.013 0.101 0.214 6.752 -4.860 6.397 29 X_G15:C27_X X 15 ? X 27 ? 19 1 1 A G 16 1_555 A C 26 1_555 -0.508 0.405 -0.333 -1.340 -16.645 15.152 30 X_G16:C26_X X 16 ? X 26 ? ? 1 1 A G 17 1_555 A C 25 1_555 0.865 0.090 -0.567 -25.604 1.726 2.136 31 X_G17:C25_X X 17 ? X 25 ? 19 1 1 A U 18 1_555 A A 22 1_555 4.779 -2.208 0.642 1.455 19.428 -89.612 32 X_U18:A22_X X 18 ? X 22 ? 24 4 1 A G 19 1_555 A A 90 1_555 6.603 -4.932 0.712 20.206 21.635 -1.903 33 X_G19:A90_X X 19 ? X 90 ? 11 10 1 A A 49 1_555 A U 60 1_555 -1.074 0.048 0.819 12.753 -11.023 -1.449 34 X_A49:U60_X X 49 ? X 60 ? 20 1 1 A A 50 1_555 A U 59 1_555 0.288 0.103 0.047 4.289 -21.162 0.652 35 X_A50:U59_X X 50 ? X 59 ? 20 1 1 A G 51 1_555 A C 58 1_555 -0.267 0.118 0.625 -6.615 -23.903 6.346 36 X_G51:C58_X X 51 ? X 58 ? ? 1 1 A U 52 1_555 A G 57 1_555 2.184 0.012 0.651 -10.212 -17.038 2.985 37 X_U52:G57_X X 52 ? X 57 ? 28 ? 1 A A 85 1_555 A G 98 1_555 0.313 1.535 0.058 3.695 -15.857 -9.657 38 X_A85:G98_X X 85 ? X 98 ? 8 ? 1 A C 86 1_555 A G 97 1_555 0.532 -0.071 -0.046 22.756 -29.719 5.521 39 X_C86:G97_X X 86 ? X 97 ? 19 1 1 A A 87 1_555 A U 96 1_555 -0.106 -0.120 0.732 -0.515 -22.992 7.828 40 X_A87:U96_X X 87 ? X 96 ? 20 1 1 A G 88 1_555 A C 95 1_555 0.532 -0.097 0.552 -17.479 -23.529 1.059 41 X_G88:C95_X X 88 ? X 95 ? 19 1 1 A U 89 1_555 A A 92 1_555 4.332 -2.091 0.364 12.506 10.356 -95.766 42 X_U89:A92_X X 89 ? X 92 ? 24 4 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A GTP 1 1_555 A CCC 112 1_555 A G 2 1_555 A U 111 1_555 -0.005 -1.502 2.801 -10.533 14.927 25.413 -4.902 -1.480 1.585 29.551 20.852 31.210 1 XX_GTP1G2:U111CCC112_XX X 1 ? X 112 ? X 2 ? X 111 ? 1 A G 2 1_555 A U 111 1_555 A U 4 1_555 A A 109 1_555 -0.508 -3.341 6.543 -2.316 11.374 74.141 -3.423 0.280 6.064 9.379 1.910 74.915 2 XX_G2U4:A109U111_XX X 2 ? X 111 ? X 4 ? X 109 ? 1 A U 4 1_555 A A 109 1_555 A C 5 1_555 A G 108 1_555 1.648 -1.660 2.769 6.249 6.083 28.184 -4.365 -2.108 2.656 12.130 -12.460 29.477 3 XX_U4C5:G108A109_XX X 4 ? X 109 ? X 5 ? X 108 ? 1 A C 5 1_555 A G 108 1_555 A U 6 1_555 A A 107 1_555 -1.194 -1.912 3.280 -5.142 3.647 31.830 -4.064 1.234 3.195 6.569 9.262 32.433 4 XX_C5U6:A107G108_XX X 5 ? X 108 ? X 6 ? X 107 ? 1 A U 6 1_555 A A 107 1_555 A U 7 1_555 A A 106 1_555 -1.356 -1.333 2.503 12.598 8.226 20.055 -4.494 5.300 0.903 20.327 -31.130 25.025 5 XX_U6U7:A106A107_XX X 6 ? X 107 ? X 7 ? X 106 ? 1 A U 7 1_555 A A 106 1_555 A C 8 1_555 A G 105 1_555 1.724 -1.902 4.435 -15.303 -1.578 40.249 -2.397 -4.294 3.644 -2.198 21.319 42.975 6 XX_U7C8:G105A106_XX X 7 ? X 106 ? X 8 ? X 105 ? 1 A C 8 1_555 A G 105 1_555 A G 9 1_555 A A 104 1_555 -1.481 -0.787 4.053 13.891 13.476 55.480 -1.630 2.366 3.371 14.010 -14.441 58.505 7 XX_C8G9:A104G105_XX X 8 ? X 105 ? X 9 ? X 104 ? 1 A G 10 1_555 A G 47 1_555 A G 33 1_555 A C 46 1_555 -0.603 -3.592 -2.921 123.899 -93.111 13.955 -2.279 -0.277 1.299 -53.142 -70.714 155.174 8 XX_G10G33:C46G47_XX X 10 ? X 47 ? X 33 ? X 46 ? 1 A G 33 1_555 A C 46 1_555 A U 34 1_555 A A 45 1_555 0.077 -1.886 3.150 2.931 -1.754 34.080 -2.933 0.320 3.236 -2.983 -4.985 34.246 9 XX_G33U34:A45C46_XX X 33 ? X 46 ? X 34 ? X 45 ? 1 A U 34 1_555 A A 45 1_555 A G 35 1_555 A C 44 1_555 -0.926 -1.629 3.784 0.025 17.959 33.990 -4.831 1.414 2.629 28.396 -0.039 38.318 10 XX_U34G35:C44A45_XX X 34 ? X 45 ? X 35 ? X 44 ? 1 A G 35 1_555 A C 44 1_555 A G 36 1_555 A C 43 1_555 0.474 -1.802 3.377 3.557 10.813 31.337 -4.864 -0.262 2.662 19.241 -6.330 33.291 11 XX_G35G36:C43C44_XX X 35 ? X 44 ? X 36 ? X 43 ? 1 A G 36 1_555 A C 43 1_555 A U 37 1_555 A A 40 1_555 -1.209 -1.102 2.802 7.193 4.546 79.767 -0.956 1.098 2.649 3.536 -5.594 80.144 12 XX_G36U37:A40C43_XX X 36 ? X 43 ? X 37 ? X 40 ? 1 A A 38 1_555 A G 70 1_555 A A 73 1_555 A U 69 1_555 -1.090 -0.065 3.059 -4.596 6.902 0.919 -20.637 -5.955 0.884 69.658 46.385 8.343 13 XX_A38A73:U69G70_XX X 38 ? X 70 ? X 73 ? X 69 ? 1 A A 73 1_555 A U 69 1_555 A C 76 1_555 A G 68 1_555 2.289 -1.526 2.989 -6.800 -1.939 68.697 -1.284 -2.242 2.817 -1.713 6.010 69.015 14 XX_A73C76:G68U69_XX X 73 ? X 69 ? X 76 ? X 68 ? 1 A C 76 1_555 A G 68 1_555 A C 77 1_555 A G 67 1_555 -0.188 -1.627 3.117 0.961 3.188 43.536 -2.473 0.339 2.992 4.291 -1.294 43.657 15 XX_C76C77:G67G68_XX X 76 ? X 68 ? X 77 ? X 67 ? 1 A C 77 1_555 A G 67 1_555 A A 78 1_555 A U 66 1_555 -0.523 -1.689 3.444 -2.816 18.937 28.618 -5.582 0.482 2.014 33.934 5.047 34.320 16 XX_C77A78:U66G67_XX X 77 ? X 67 ? X 78 ? X 66 ? 1 A A 78 1_555 A U 66 1_555 A A 79 1_555 A U 65 1_555 0.668 -1.309 3.161 2.400 6.224 32.824 -3.234 -0.788 2.911 10.874 -4.193 33.476 17 XX_A78A79:U65U66_XX X 78 ? X 66 ? X 79 ? X 65 ? 1 A A 79 1_555 A U 65 1_555 A A 80 1_555 A U 64 1_555 0.330 -0.822 3.100 2.002 0.468 30.713 -1.636 -0.251 3.102 0.882 -3.774 30.780 18 XX_A79A80:U64U65_XX X 79 ? X 65 ? X 80 ? X 64 ? 1 A A 80 1_555 A U 64 1_555 A A 81 1_555 A U 42 1_555 -0.165 -2.999 3.789 9.412 6.547 23.170 -8.594 3.077 2.597 15.166 -21.804 25.816 19 XX_A80A81:U42U64_XX X 80 ? X 64 ? X 81 ? X 42 ? 1 A A 81 1_555 A U 42 1_555 A C 82 1_555 A G 41 1_555 1.231 -1.587 2.858 -6.120 6.673 37.873 -3.036 -2.447 2.336 10.105 9.269 38.902 20 XX_A81C82:G41U42_XX X 81 ? X 42 ? X 82 ? X 41 ? 1 A C 82 1_555 A G 41 1_555 A C 83 1_555 A G 32 1_555 -0.668 -1.510 3.717 -1.081 3.565 33.119 -3.296 0.964 3.559 6.229 1.888 33.321 21 XX_C82C83:G32G41_XX X 82 ? X 41 ? X 83 ? X 32 ? 1 A C 83 1_555 A G 32 1_555 A G 84 1_555 A C 31 1_555 0.151 0.370 2.654 0.159 10.390 27.720 -1.112 -0.267 2.620 20.784 -0.319 29.568 22 XX_C83G84:C31G32_XX X 83 ? X 32 ? X 84 ? X 31 ? 1 A G 84 1_555 A C 31 1_555 A G 93 1_555 A C 30 1_555 1.095 -1.719 3.329 -2.953 15.366 29.304 -5.292 -2.357 2.078 27.999 5.381 33.139 23 XX_G84G93:C30C31_XX X 84 ? X 31 ? X 93 ? X 30 ? 1 A G 93 1_555 A C 30 1_555 A U 94 1_555 A A 29 1_555 -1.042 -1.336 2.985 -0.937 2.488 37.469 -2.368 1.509 2.918 3.867 1.456 37.560 24 XX_G93U94:A29C30_XX X 93 ? X 30 ? X 94 ? X 29 ? 1 A U 94 1_555 A A 29 1_555 A C 13 1_555 A G 28 1_555 1.305 -1.289 3.677 1.346 -0.791 51.251 -1.428 -1.404 3.726 -0.914 -1.556 51.273 25 XX_U94C13:G28A29_XX X 94 ? X 29 ? X 13 ? X 28 ? 1 A C 13 1_555 A G 28 1_555 A G 15 1_555 A C 27 1_555 -5.538 0.229 3.098 -0.082 1.004 36.681 0.233 8.785 3.115 1.594 0.131 36.694 26 XX_C13G15:C27G28_XX X 13 ? X 28 ? X 15 ? X 27 ? 1 A G 15 1_555 A C 27 1_555 A G 16 1_555 A C 26 1_555 0.990 -2.086 3.309 5.015 12.502 27.241 -6.266 -0.978 2.296 24.719 -9.916 30.333 27 XX_G15G16:C26C27_XX X 15 ? X 27 ? X 16 ? X 26 ? 1 A G 16 1_555 A C 26 1_555 A G 17 1_555 A C 25 1_555 -0.527 -1.809 3.694 1.203 11.779 41.693 -3.669 0.839 3.081 16.161 -1.650 43.269 28 XX_G16G17:C25C26_XX X 16 ? X 26 ? X 17 ? X 25 ? 1 A G 17 1_555 A C 25 1_555 A U 18 1_555 A A 22 1_555 -2.747 -1.820 2.762 -0.711 -0.228 71.652 -1.548 2.326 2.791 -0.195 0.607 71.655 29 XX_G17U18:A22C25_XX X 17 ? X 25 ? X 18 ? X 22 ? 1 A U 18 1_555 A A 22 1_555 A G 19 1_555 A A 90 1_555 0.913 -0.500 2.775 3.314 4.937 -3.422 -12.179 18.614 1.304 -49.901 33.503 -6.860 30 XX_U18G19:A90A22_XX X 18 ? X 22 ? X 19 ? X 90 ? 1 A A 49 1_555 A U 60 1_555 A A 50 1_555 A U 59 1_555 -0.248 -1.030 3.524 3.350 8.117 38.301 -2.543 0.786 3.216 12.177 -5.026 39.258 31 XX_A49A50:U59U60_XX X 49 ? X 60 ? X 50 ? X 59 ? 1 A A 50 1_555 A U 59 1_555 A G 51 1_555 A C 58 1_555 1.104 -2.498 3.373 -0.988 8.679 28.429 -6.538 -2.343 2.479 17.167 1.954 29.714 32 XX_A50G51:C58U59_XX X 50 ? X 59 ? X 51 ? X 58 ? 1 A G 51 1_555 A C 58 1_555 A U 52 1_555 A G 57 1_555 -0.167 -1.169 3.290 1.467 5.077 44.845 -1.971 0.347 3.140 6.628 -1.915 45.140 33 XX_G51U52:G57C58_XX X 51 ? X 58 ? X 52 ? X 57 ? 1 A A 85 1_555 A G 98 1_555 A C 86 1_555 A G 97 1_555 0.961 -0.890 2.699 -0.405 1.509 33.613 -1.739 -1.714 2.646 2.609 0.700 33.648 34 XX_A85C86:G97G98_XX X 85 ? X 98 ? X 86 ? X 97 ? 1 A C 86 1_555 A G 97 1_555 A A 87 1_555 A U 96 1_555 -0.326 -1.763 3.390 -7.981 21.785 32.709 -4.846 -0.352 1.924 33.889 12.416 39.918 35 XX_C86A87:U96G97_XX X 86 ? X 97 ? X 87 ? X 96 ? 1 A A 87 1_555 A U 96 1_555 A G 88 1_555 A C 95 1_555 -0.059 -1.446 3.593 6.367 6.561 39.374 -2.880 0.847 3.273 9.581 -9.298 40.381 36 XX_A87G88:C95U96_XX X 87 ? X 96 ? X 88 ? X 95 ? 1 A G 88 1_555 A C 95 1_555 A U 89 1_555 A A 92 1_555 -1.481 -1.025 2.751 5.561 1.209 77.557 -0.845 1.310 2.643 0.964 -4.434 77.733 37 XX_G88U89:A92C95_XX X 88 ? X 95 ? X 89 ? X 92 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'FLAVIN MONONUCLEOTIDE' FMN 3 'MAGNESIUM ION' MG 4 'BARIUM ION' BA 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3F2Q _pdbx_initial_refinement_model.details ? #