HEADER RNA 30-OCT-08 3F2X TITLE CRYSTAL STRUCTURE OF THE FMN RIBOSWITCH BOUND TO FMN, CS+ SOAK. COMPND MOL_ID: 1; COMPND 2 MOLECULE: FMN RIBOSWITCH; COMPND 3 CHAIN: X; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: IN VITRO TRANSCRIBED RNA FROM THE FUSOBACTERIUM SOURCE 4 NUCLEATUM IMPX GENE KEYWDS FMN, RIBOSWITCH, TRANSCRIPTION, CESIUM, RNA EXPDTA X-RAY DIFFRACTION AUTHOR A.A.SERGANOV,L.HUANG REVDAT 5 06-SEP-23 3F2X 1 REMARK SEQADV LINK REVDAT 4 13-JUL-11 3F2X 1 VERSN REVDAT 3 17-MAR-09 3F2X 1 JRNL REVDAT 2 03-MAR-09 3F2X 1 JRNL REVDAT 1 27-JAN-09 3F2X 0 JRNL AUTH A.SERGANOV,L.HUANG,D.J.PATEL JRNL TITL COENZYME RECOGNITION AND GENE REGULATION BY A FLAVIN JRNL TITL 2 MONONUCLEOTIDE RIBOSWITCH. JRNL REF NATURE V. 458 233 2009 JRNL REFN ISSN 0028-0836 JRNL PMID 19169240 JRNL DOI 10.1038/NATURE07642 REMARK 2 REMARK 2 RESOLUTION. 3.11 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.11 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 7336 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.600 REMARK 3 FREE R VALUE TEST SET COUNT : 355 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.11 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.19 REMARK 3 REFLECTION IN BIN (WORKING SET) : 489 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.86 REMARK 3 BIN R VALUE (WORKING SET) : 0.3830 REMARK 3 BIN FREE R VALUE SET COUNT : 18 REMARK 3 BIN FREE R VALUE : 0.4770 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 2353 REMARK 3 HETEROGEN ATOMS : 48 REMARK 3 SOLVENT ATOMS : 2 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 98.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.18000 REMARK 3 B22 (A**2) : -1.18000 REMARK 3 B33 (A**2) : 1.76000 REMARK 3 B12 (A**2) : -0.59000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.391 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.326 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 39.329 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2670 ; 0.004 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4155 ; 1.058 ; 3.000 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 546 ; 0.049 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1164 ; 0.002 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 858 ; 0.146 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1605 ; 0.271 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 65 ; 0.132 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.034 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 13 ; 0.112 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 1 ; 0.005 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2769 ; 0.433 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 4155 ; 0.728 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : X 1 X 9 REMARK 3 RESIDUE RANGE : X 85 X 112 REMARK 3 ORIGIN FOR THE GROUP (A): 18.7526 30.1980 15.6094 REMARK 3 T TENSOR REMARK 3 T11: -0.2072 T22: 0.1645 REMARK 3 T33: 0.4961 T12: -0.0661 REMARK 3 T13: 0.0048 T23: 0.1207 REMARK 3 L TENSOR REMARK 3 L11: 12.5057 L22: 2.2208 REMARK 3 L33: 2.0031 L12: 1.1655 REMARK 3 L13: 0.2703 L23: 0.4254 REMARK 3 S TENSOR REMARK 3 S11: 0.1343 S12: -0.2376 S13: -2.1828 REMARK 3 S21: -0.1943 S22: -0.0493 S23: 0.7362 REMARK 3 S31: 0.2766 S32: -0.8325 S33: -0.0850 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : X 10 X 30 REMARK 3 ORIGIN FOR THE GROUP (A): 45.1500 42.5757 9.2248 REMARK 3 T TENSOR REMARK 3 T11: -0.3853 T22: -0.0767 REMARK 3 T33: -0.2644 T12: -0.0573 REMARK 3 T13: 0.0434 T23: -0.1109 REMARK 3 L TENSOR REMARK 3 L11: 8.5391 L22: 3.6721 REMARK 3 L33: 7.7676 L12: 0.1346 REMARK 3 L13: -1.7786 L23: -1.0716 REMARK 3 S TENSOR REMARK 3 S11: 0.1886 S12: 0.2969 S13: -0.3571 REMARK 3 S21: 0.0614 S22: -0.2417 S23: -0.0900 REMARK 3 S31: -0.2910 S32: 0.9105 S33: 0.0532 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : X 31 X 48 REMARK 3 ORIGIN FOR THE GROUP (A): 17.4720 47.5377 17.6537 REMARK 3 T TENSOR REMARK 3 T11: -0.1705 T22: 0.0184 REMARK 3 T33: -0.1719 T12: 0.1537 REMARK 3 T13: 0.1447 T23: 0.0189 REMARK 3 L TENSOR REMARK 3 L11: 4.2757 L22: 5.8024 REMARK 3 L33: 1.6893 L12: -0.3770 REMARK 3 L13: -0.0080 L23: -2.1931 REMARK 3 S TENSOR REMARK 3 S11: -0.1089 S12: -0.6014 S13: -0.5748 REMARK 3 S21: 0.9015 S22: 0.2002 S23: 0.4956 REMARK 3 S31: -0.4162 S32: -0.7500 S33: -0.0913 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : X 49 X 60 REMARK 3 ORIGIN FOR THE GROUP (A): 22.3388 33.8264 35.4522 REMARK 3 T TENSOR REMARK 3 T11: 0.9254 T22: 0.4713 REMARK 3 T33: 0.3985 T12: -0.1194 REMARK 3 T13: 0.0281 T23: 0.5167 REMARK 3 L TENSOR REMARK 3 L11: 11.3545 L22: 6.0296 REMARK 3 L33: 7.4613 L12: 5.3661 REMARK 3 L13: -7.7289 L23: -0.9708 REMARK 3 S TENSOR REMARK 3 S11: 0.1677 S12: -2.0209 S13: -1.1011 REMARK 3 S21: 2.2440 S22: -1.8561 S23: 1.9066 REMARK 3 S31: -1.6798 S32: 0.9452 S33: 1.6884 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : X 61 X 84 REMARK 3 ORIGIN FOR THE GROUP (A): 22.4710 60.4014 14.9466 REMARK 3 T TENSOR REMARK 3 T11: 0.1106 T22: -0.1329 REMARK 3 T33: -0.2279 T12: 0.1666 REMARK 3 T13: 0.1379 T23: -0.1726 REMARK 3 L TENSOR REMARK 3 L11: 10.4165 L22: 8.4348 REMARK 3 L33: 4.0807 L12: -4.7699 REMARK 3 L13: 4.3513 L23: -2.3417 REMARK 3 S TENSOR REMARK 3 S11: -0.7476 S12: -0.8498 S13: 0.6820 REMARK 3 S21: 1.0728 S22: 0.5292 S23: 0.2567 REMARK 3 S31: -1.4491 S32: -0.5260 S33: 0.2184 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3F2X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-NOV-08. REMARK 100 THE DEPOSITION ID IS D_1000050079. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-DEC-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.493786 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7822 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 10.80 REMARK 200 R MERGE (I) : 0.12100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 47.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.3 REMARK 200 DATA REDUNDANCY IN SHELL : 6.40 REMARK 200 R MERGE FOR SHELL (I) : 0.62900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3F2Q REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES-NA PH 6.5 10% PEG 4000 0.1 M REMARK 280 MGCL2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.97933 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 93.95867 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 93.95867 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 46.97933 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 U X 54 REMARK 465 U X 55 REMARK 465 U X 56 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG X 314 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A X 22 OP1 REMARK 620 2 U X 23 OP2 82.7 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG X 305 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 U X 89 O4 REMARK 620 2 A X 92 OP2 90.5 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN X 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG X 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG X 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG X 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG X 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG X 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG X 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG X 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG X 314 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CS X 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CS X 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CS X 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CS X 404 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3F2Q RELATED DB: PDB REMARK 900 FMN BOUND, NATIVE DATA SET REMARK 900 RELATED ID: 3F2T RELATED DB: PDB REMARK 900 FMN BOUND, IRIDIUM SOAK REMARK 900 RELATED ID: 3F2W RELATED DB: PDB REMARK 900 FMN BOUND, BARIUM SOAK REMARK 900 RELATED ID: 3F2Y RELATED DB: PDB REMARK 900 FMN BOUND, MANGANESE SOAK REMARK 900 RELATED ID: 3F30 RELATED DB: PDB REMARK 900 FMN BOUND, COBALT SOAK REMARK 900 RELATED ID: 3F4E RELATED DB: PDB REMARK 900 FMN BOUND, NATIVE DATA SET, SPLIT RNA REMARK 900 RELATED ID: 3F4G RELATED DB: PDB REMARK 900 RIBOFLAVIN BOUND, NATIVE DATA SET, SPLIT RNA REMARK 900 RELATED ID: 3F4H RELATED DB: PDB REMARK 900 ROSEOFLAVIN BOUND DBREF 3F2X X 3 109 GB 20095250 AE009951 2495 2601 SEQADV 3F2X GTP X 1 GB 20095250 INSERTION SEQADV 3F2X G X 2 GB 20095250 INSERTION SEQADV 3F2X U X 110 GB 20095250 INSERTION SEQADV 3F2X U X 111 GB 20095250 INSERTION SEQADV 3F2X CCC X 112 GB 20095250 INSERTION SEQRES 1 X 112 GTP G A U C U U C G G G G C SEQRES 2 X 112 A G G G U G A A A U U C C SEQRES 3 X 112 C G A C C G G U G G U A U SEQRES 4 X 112 A G U C C A C G A A A G U SEQRES 5 X 112 A U U U G C U U U G A U U SEQRES 6 X 112 U G G U G A A A U U C C A SEQRES 7 X 112 A A A C C G A C A G U A G SEQRES 8 X 112 A G U C U G G A U G A G A SEQRES 9 X 112 G A A G A U U CCC MODRES 3F2X GTP X 1 G GUANOSINE-5'-TRIPHOSPHATE MODRES 3F2X CCC X 112 C HET GTP X 1 32 HET CCC X 112 23 HET FMN X 200 31 HET MG X 302 1 HET MG X 303 1 HET MG X 304 1 HET MG X 305 1 HET MG X 306 1 HET MG X 307 1 HET MG X 308 1 HET MG X 309 1 HET MG X 310 1 HET MG X 311 1 HET MG X 313 1 HET MG X 314 1 HET MG X 315 1 HET CS X 401 1 HET CS X 402 1 HET CS X 403 1 HET CS X 404 1 HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE HETNAM CCC CYTIDINE-5'-PHOSPHATE-2',3'-CYCLIC PHOSPHATE HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM MG MAGNESIUM ION HETNAM CS CESIUM ION HETSYN FMN RIBOFLAVIN MONOPHOSPHATE FORMUL 1 GTP C10 H16 N5 O14 P3 FORMUL 1 CCC C9 H13 N3 O10 P2 FORMUL 2 FMN C17 H21 N4 O9 P FORMUL 3 MG 13(MG 2+) FORMUL 16 CS 4(CS 1+) FORMUL 20 HOH *2(H2 O) LINK O3' GTP X 1 P G X 2 1555 1555 1.59 LINK O3' U X 111 P CCC X 112 1555 1555 1.60 LINK OP2 G X 2 MG MG X 308 1555 1555 1.96 LINK OP2 A X 14 MG MG X 306 1555 1555 2.06 LINK OP1 A X 22 MG MG X 314 1555 1555 2.45 LINK OP2 U X 23 MG MG X 314 1555 1555 2.07 LINK O6 G X 28 MG MG X 310 1555 1555 2.27 LINK O4 U X 89 MG MG X 305 1555 1555 2.04 LINK OP2 A X 92 MG MG X 305 1555 1555 2.08 LINK O1P FMN X 200 MG MG X 304 1555 1555 2.23 SITE 1 AC1 12 G X 10 G X 11 G X 32 G X 33 SITE 2 AC1 12 A X 48 A X 49 G X 62 G X 84 SITE 3 AC1 12 A X 85 A X 99 MG X 304 CS X 401 SITE 1 AC2 1 G X 19 SITE 1 AC3 1 G X 93 SITE 1 AC4 3 G X 33 G X 41 FMN X 200 SITE 1 AC5 2 U X 89 A X 92 SITE 1 AC6 1 A X 14 SITE 1 AC7 2 GTP X 1 G X 2 SITE 1 AC8 1 G X 28 SITE 1 AC9 2 A X 22 U X 23 SITE 1 BC1 2 G X 11 FMN X 200 SITE 1 BC2 4 GTP X 1 G X 2 U X 110 U X 111 SITE 1 BC3 1 U X 37 SITE 1 BC4 1 G X 98 CRYST1 71.370 71.370 140.938 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014011 0.008090 0.000000 0.00000 SCALE2 0.000000 0.016179 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007095 0.00000 HETATM 1 PG GTP X 1 -1.128 36.390 15.110 1.00122.04 P HETATM 2 O1G GTP X 1 -0.287 37.643 15.014 1.00121.98 O HETATM 3 O2G GTP X 1 -0.264 35.236 15.565 1.00122.07 O HETATM 4 O3G GTP X 1 -1.734 36.080 13.759 1.00122.14 O HETATM 5 O3B GTP X 1 -2.309 36.633 16.180 1.00121.20 O HETATM 6 PB GTP X 1 -3.273 35.431 16.659 1.00120.27 P HETATM 7 O1B GTP X 1 -2.818 34.928 18.009 1.00120.32 O HETATM 8 O2B GTP X 1 -3.297 34.309 15.646 1.00120.26 O HETATM 9 O3A GTP X 1 -4.725 36.125 16.777 1.00118.84 O HETATM 10 PA GTP X 1 -5.141 36.988 18.072 1.00117.44 P HETATM 11 O1A GTP X 1 -6.435 37.725 17.808 1.00117.32 O HETATM 12 O2A GTP X 1 -4.037 37.934 18.482 1.00117.33 O HETATM 13 O5' GTP X 1 -5.375 35.864 19.195 1.00116.36 O HETATM 14 C5' GTP X 1 -5.550 36.227 20.544 1.00114.76 C HETATM 15 C4' GTP X 1 -6.713 35.442 21.133 1.00113.62 C HETATM 16 O4' GTP X 1 -7.859 35.526 20.313 1.00113.03 O HETATM 17 C3' GTP X 1 -6.443 33.948 21.198 1.00113.10 C HETATM 18 O3' GTP X 1 -5.629 33.567 22.292 1.00112.83 O HETATM 19 C2' GTP X 1 -7.824 33.307 21.233 1.00112.90 C HETATM 20 O2' GTP X 1 -8.413 33.417 22.511 1.00112.96 O HETATM 21 C1' GTP X 1 -8.523 34.272 20.272 1.00112.44 C HETATM 22 N9 GTP X 1 -8.512 33.691 18.908 1.00111.61 N HETATM 23 C8 GTP X 1 -7.927 34.229 17.789 1.00111.25 C HETATM 24 N7 GTP X 1 -8.133 33.396 16.743 1.00110.94 N HETATM 25 C5 GTP X 1 -8.841 32.327 17.172 1.00110.85 C HETATM 26 C6 GTP X 1 -9.319 31.189 16.525 1.00110.55 C HETATM 27 O6 GTP X 1 -9.111 31.024 15.324 1.00110.42 O HETATM 28 N1 GTP X 1 -10.029 30.240 17.235 1.00110.26 N HETATM 29 C2 GTP X 1 -10.262 30.424 18.584 1.00110.29 C HETATM 30 N2 GTP X 1 -10.942 29.514 19.272 1.00110.21 N HETATM 31 N3 GTP X 1 -9.789 31.556 19.219 1.00110.58 N HETATM 32 C4 GTP X 1 -9.088 32.497 18.530 1.00111.07 C