HEADER RNA 30-OCT-08 3F2Y TITLE CRYSTAL STRUCTURE OF THE FMN RIBOSWITCH BOUND TO FMN, MN2+ SOAK. COMPND MOL_ID: 1; COMPND 2 MOLECULE: FMN RIBOSWITCH; COMPND 3 CHAIN: X; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: IN VITRO TRANSCRIBED RNA FROM THE FUSOBACTERIUM SOURCE 4 NUCLEATUM IMPX GENE. KEYWDS FMN, RIBOSWITCH, TRANSCRIPTION, MANGANESE, RNA EXPDTA X-RAY DIFFRACTION AUTHOR A.A.SERGANOV,L.HUANG REVDAT 5 06-SEP-23 3F2Y 1 REMARK SEQADV LINK REVDAT 4 13-JUL-11 3F2Y 1 VERSN REVDAT 3 17-MAR-09 3F2Y 1 JRNL REVDAT 2 03-MAR-09 3F2Y 1 JRNL REVDAT 1 27-JAN-09 3F2Y 0 JRNL AUTH A.SERGANOV,L.HUANG,D.J.PATEL JRNL TITL COENZYME RECOGNITION AND GENE REGULATION BY A FLAVIN JRNL TITL 2 MONONUCLEOTIDE RIBOSWITCH. JRNL REF NATURE V. 458 233 2009 JRNL REFN ISSN 0028-0836 JRNL PMID 19169240 JRNL DOI 10.1038/NATURE07642 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 6750 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.600 REMARK 3 FREE R VALUE TEST SET COUNT : 329 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.28 REMARK 3 REFLECTION IN BIN (WORKING SET) : 444 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.58 REMARK 3 BIN R VALUE (WORKING SET) : 0.2580 REMARK 3 BIN FREE R VALUE SET COUNT : 27 REMARK 3 BIN FREE R VALUE : 0.3040 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 2353 REMARK 3 HETEROGEN ATOMS : 48 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 109.2 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.59000 REMARK 3 B22 (A**2) : -3.59000 REMARK 3 B33 (A**2) : 5.39000 REMARK 3 B12 (A**2) : -1.80000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.461 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.347 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 40.487 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.924 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2671 ; 0.004 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4155 ; 1.019 ; 3.000 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 546 ; 0.046 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1164 ; 0.002 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1059 ; 0.142 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1602 ; 0.272 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 68 ; 0.135 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 2 ; 0.055 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 14 ; 0.121 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 1 ; 0.142 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2853 ; 0.543 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 4155 ; 0.953 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : X 1 X 9 REMARK 3 RESIDUE RANGE : X 85 X 112 REMARK 3 ORIGIN FOR THE GROUP (A): 18.6990 29.9520 15.4020 REMARK 3 T TENSOR REMARK 3 T11: -0.2509 T22: 0.1417 REMARK 3 T33: 0.6035 T12: -0.0831 REMARK 3 T13: -0.0097 T23: 0.0769 REMARK 3 L TENSOR REMARK 3 L11: 11.9710 L22: 1.6233 REMARK 3 L33: 2.1065 L12: -1.1008 REMARK 3 L13: 0.4161 L23: -0.2063 REMARK 3 S TENSOR REMARK 3 S11: 0.1049 S12: 0.3215 S13: -2.6678 REMARK 3 S21: -0.1053 S22: 0.0972 S23: 0.7231 REMARK 3 S31: 0.1642 S32: -0.6827 S33: -0.2021 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : X 10 X 30 REMARK 3 ORIGIN FOR THE GROUP (A): 44.9220 42.3440 9.1240 REMARK 3 T TENSOR REMARK 3 T11: -0.4059 T22: -0.0196 REMARK 3 T33: -0.1499 T12: -0.0816 REMARK 3 T13: 0.0253 T23: -0.0675 REMARK 3 L TENSOR REMARK 3 L11: 6.4511 L22: 0.8900 REMARK 3 L33: 6.0668 L12: -1.4805 REMARK 3 L13: -0.5547 L23: 0.1723 REMARK 3 S TENSOR REMARK 3 S11: 0.1392 S12: 0.4860 S13: -0.3063 REMARK 3 S21: -0.0326 S22: -0.1188 S23: -0.0642 REMARK 3 S31: -0.3692 S32: 0.7227 S33: -0.0204 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : X 31 X 48 REMARK 3 ORIGIN FOR THE GROUP (A): 17.4350 47.1410 17.4790 REMARK 3 T TENSOR REMARK 3 T11: -0.2131 T22: -0.0476 REMARK 3 T33: -0.1918 T12: 0.1293 REMARK 3 T13: 0.1317 T23: 0.0328 REMARK 3 L TENSOR REMARK 3 L11: 4.5974 L22: 5.6413 REMARK 3 L33: 1.9600 L12: -0.4844 REMARK 3 L13: 1.7692 L23: -1.7712 REMARK 3 S TENSOR REMARK 3 S11: -0.0259 S12: -0.5927 S13: -0.1561 REMARK 3 S21: 0.7451 S22: 0.2092 S23: 0.4054 REMARK 3 S31: -0.5424 S32: -0.5455 S33: -0.1833 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : X 49 X 60 REMARK 3 ORIGIN FOR THE GROUP (A): 22.4250 33.6020 35.0280 REMARK 3 T TENSOR REMARK 3 T11: 0.8646 T22: 0.3648 REMARK 3 T33: 0.4598 T12: -0.4471 REMARK 3 T13: 0.4309 T23: 0.8644 REMARK 3 L TENSOR REMARK 3 L11: 6.5487 L22: 1.2035 REMARK 3 L33: 5.4886 L12: -1.3567 REMARK 3 L13: 5.0246 L23: -2.2684 REMARK 3 S TENSOR REMARK 3 S11: 0.3544 S12: -1.5849 S13: -1.2603 REMARK 3 S21: 2.4722 S22: -2.6950 S23: 4.2408 REMARK 3 S31: -1.7178 S32: 0.9399 S33: 2.3406 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : X 61 X 84 REMARK 3 ORIGIN FOR THE GROUP (A): 22.3260 60.0070 14.9110 REMARK 3 T TENSOR REMARK 3 T11: 0.1347 T22: -0.1175 REMARK 3 T33: -0.0224 T12: 0.1002 REMARK 3 T13: 0.0733 T23: -0.0795 REMARK 3 L TENSOR REMARK 3 L11: 7.6823 L22: 3.6974 REMARK 3 L33: 3.4632 L12: -2.3430 REMARK 3 L13: 3.1369 L23: -0.9927 REMARK 3 S TENSOR REMARK 3 S11: -0.5085 S12: -0.6267 S13: 0.7068 REMARK 3 S21: 0.7567 S22: 0.3322 S23: 0.3296 REMARK 3 S31: -1.0073 S32: -0.4120 S33: 0.1762 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3F2Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-NOV-08. REMARK 100 THE DEPOSITION ID IS D_1000050080. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JAN-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5498 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7108 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 8.600 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 39.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.5 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 0.33900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3F2Q REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 MES-NA PH 6.5 10% PEG 4000 0.1 M REMARK 280 MGCL2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.66800 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 93.33600 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 93.33600 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 46.66800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 U X 54 REMARK 465 U X 55 REMARK 465 U X 56 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG X 314 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A X 22 OP1 REMARK 620 2 U X 23 OP2 84.3 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN X 403 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 U X 89 O4 REMARK 620 2 A X 92 OP2 88.1 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN X 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K X 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K X 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG X 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG X 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG X 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG X 314 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG X 315 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG X 317 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN X 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN X 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN X 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN X 404 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3F2Q RELATED DB: PDB REMARK 900 FMN BOUND, NATIVE DATA SET REMARK 900 RELATED ID: 3F2T RELATED DB: PDB REMARK 900 FMN BOUND, IRIDIUM SOAK REMARK 900 RELATED ID: 3F2W RELATED DB: PDB REMARK 900 FMN BOUND, BARIUM SOAK REMARK 900 RELATED ID: 3F2X RELATED DB: PDB REMARK 900 FMN BOUND, CESIUM SOAK REMARK 900 RELATED ID: 3F30 RELATED DB: PDB REMARK 900 FMN BOUND, COBALT SOAK REMARK 900 RELATED ID: 3F4E RELATED DB: PDB REMARK 900 FMN BOUND, NATIVE DATA SET, SPLIT RNA REMARK 900 RELATED ID: 3F4G RELATED DB: PDB REMARK 900 RIBOFLAVIN BOUND, NATIVE DATA SET, SPLIT RNA REMARK 900 RELATED ID: 3F4H RELATED DB: PDB REMARK 900 ROSEOFLAVIN BOUND DBREF 3F2Y X 3 109 GB 20095250 AE009951 2495 2601 SEQADV 3F2Y GTP X 1 GB 20095250 INSERTION SEQADV 3F2Y G X 2 GB 20095250 INSERTION SEQADV 3F2Y U X 110 GB 20095250 INSERTION SEQADV 3F2Y U X 111 GB 20095250 INSERTION SEQADV 3F2Y CCC X 112 GB 20095250 INSERTION SEQRES 1 X 112 GTP G A U C U U C G G G G C SEQRES 2 X 112 A G G G U G A A A U U C C SEQRES 3 X 112 C G A C C G G U G G U A U SEQRES 4 X 112 A G U C C A C G A A A G U SEQRES 5 X 112 A U U U G C U U U G A U U SEQRES 6 X 112 U G G U G A A A U U C C A SEQRES 7 X 112 A A A C C G A C A G U A G SEQRES 8 X 112 A G U C U G G A U G A G A SEQRES 9 X 112 G A A G A U U CCC MODRES 3F2Y GTP X 1 G GUANOSINE-5'-TRIPHOSPHATE MODRES 3F2Y CCC X 112 C HET GTP X 1 32 HET CCC X 112 23 HET FMN X 200 31 HET K X 300 1 HET K X 301 1 HET MG X 306 1 HET MG X 307 1 HET MG X 308 1 HET MG X 309 1 HET MG X 310 1 HET MG X 311 1 HET MG X 313 1 HET MG X 314 1 HET MG X 315 1 HET MG X 316 1 HET MG X 317 1 HET MN X 401 1 HET MN X 402 1 HET MN X 403 1 HET MN X 404 1 HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE HETNAM CCC CYTIDINE-5'-PHOSPHATE-2',3'-CYCLIC PHOSPHATE HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM K POTASSIUM ION HETNAM MG MAGNESIUM ION HETNAM MN MANGANESE (II) ION HETSYN FMN RIBOFLAVIN MONOPHOSPHATE FORMUL 1 GTP C10 H16 N5 O14 P3 FORMUL 1 CCC C9 H13 N3 O10 P2 FORMUL 2 FMN C17 H21 N4 O9 P FORMUL 3 K 2(K 1+) FORMUL 5 MG 11(MG 2+) FORMUL 16 MN 4(MN 2+) LINK O3' GTP X 1 P G X 2 1555 1555 1.60 LINK O3' U X 111 P CCC X 112 1555 1555 1.60 LINK O2B GTP X 1 MG MG X 308 1555 1555 1.91 LINK OP2 A X 14 MG MG X 306 1555 1555 1.98 LINK OP1 A X 22 MG MG X 314 1555 1555 2.29 LINK OP2 U X 23 MG MG X 314 1555 1555 2.02 LINK O6 G X 28 MG MG X 310 1555 1555 2.44 LINK O4 U X 89 MN MN X 403 1555 1555 2.14 LINK OP2 A X 92 MN MN X 403 1555 1555 2.09 LINK O1P FMN X 200 MN MN X 404 1555 1555 2.43 SITE 1 AC1 12 G X 10 G X 11 G X 32 G X 33 SITE 2 AC1 12 A X 48 A X 49 U X 61 G X 62 SITE 3 AC1 12 G X 84 A X 85 A X 99 MN X 404 SITE 1 AC2 2 G X 36 U X 37 SITE 1 AC3 2 U X 96 G X 97 SITE 1 AC4 3 C X 13 A X 14 G X 15 SITE 1 AC5 2 GTP X 1 G X 2 SITE 1 AC6 1 G X 28 SITE 1 AC7 2 A X 22 U X 23 SITE 1 AC8 3 C X 43 U X 65 U X 74 SITE 1 AC9 1 C X 43 SITE 1 BC1 1 G X 19 SITE 1 BC2 1 G X 93 SITE 1 BC3 2 U X 89 A X 92 SITE 1 BC4 2 G X 33 FMN X 200 CRYST1 70.988 70.988 140.004 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014087 0.008133 0.000000 0.00000 SCALE2 0.000000 0.016266 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007143 0.00000 HETATM 1 PG GTP X 1 -2.392 35.403 14.634 1.00137.18 P HETATM 2 O1G GTP X 1 -2.317 36.881 14.941 1.00137.16 O HETATM 3 O2G GTP X 1 -1.284 35.038 13.673 1.00137.09 O HETATM 4 O3G GTP X 1 -3.733 35.077 14.016 1.00136.99 O HETATM 5 O3B GTP X 1 -2.194 34.576 16.006 1.00136.83 O HETATM 6 PB GTP X 1 -3.221 34.664 17.250 1.00136.50 P HETATM 7 O1B GTP X 1 -2.476 35.161 18.467 1.00136.49 O HETATM 8 O2B GTP X 1 -3.852 33.318 17.520 1.00136.47 O HETATM 9 O3A GTP X 1 -4.352 35.731 16.814 1.00135.45 O HETATM 10 PA GTP X 1 -5.129 36.641 17.894 1.00134.36 P HETATM 11 O1A GTP X 1 -6.443 37.115 17.317 1.00134.40 O HETATM 12 O2A GTP X 1 -4.271 37.807 18.326 1.00134.35 O HETATM 13 O5' GTP X 1 -5.408 35.641 19.121 1.00133.45 O HETATM 14 C5' GTP X 1 -5.700 36.139 20.407 1.00132.15 C HETATM 15 C4' GTP X 1 -6.810 35.311 21.039 1.00131.26 C HETATM 16 O4' GTP X 1 -7.994 35.393 20.277 1.00131.00 O HETATM 17 C3' GTP X 1 -6.499 33.825 21.045 1.00130.80 C HETATM 18 O3' GTP X 1 -5.666 33.428 22.119 1.00130.39 O HETATM 19 C2' GTP X 1 -7.851 33.127 21.056 1.00130.77 C HETATM 20 O2' GTP X 1 -8.425 33.148 22.346 1.00130.71 O HETATM 21 C1' GTP X 1 -8.586 34.111 20.144 1.00130.55 C HETATM 22 N9 GTP X 1 -8.497 33.624 18.747 1.00130.23 N HETATM 23 C8 GTP X 1 -7.860 34.242 17.700 1.00129.94 C HETATM 24 N7 GTP X 1 -7.994 33.479 16.592 1.00129.86 N HETATM 25 C5 GTP X 1 -8.707 32.377 16.912 1.00129.91 C HETATM 26 C6 GTP X 1 -9.128 31.281 16.165 1.00129.85 C HETATM 27 O6 GTP X 1 -8.852 31.204 14.970 1.00130.13 O HETATM 28 N1 GTP X 1 -9.863 30.279 16.768 1.00129.59 N HETATM 29 C2 GTP X 1 -10.172 30.368 18.111 1.00129.52 C HETATM 30 N2 GTP X 1 -10.874 29.405 18.698 1.00129.61 N HETATM 31 N3 GTP X 1 -9.752 31.458 18.848 1.00129.66 N HETATM 32 C4 GTP X 1 -9.031 32.451 18.262 1.00129.96 C