HEADER RNA 30-OCT-08 3F30 TITLE CRYSTAL STRUCTURE OF THE FMN RIBOSWITCH BOUND TO FMN, COBALT HEXAMMINE TITLE 2 SOAK. COMPND MOL_ID: 1; COMPND 2 MOLECULE: FMN RIBOSWITCH; COMPND 3 CHAIN: X; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: IN VITRO TRANSCRIBED RNA FROM FUSOBACTERIUM NUCLEATUM SOURCE 4 IMPX GENE. KEYWDS FMN, RIBOSWITCH, TRANSCRIPTION, COBALT HEXAMINE, RNA EXPDTA X-RAY DIFFRACTION AUTHOR A.A.SERGANOV,L.HUANG REVDAT 6 06-SEP-23 3F30 1 REMARK SEQADV LINK REVDAT 5 13-JUL-11 3F30 1 VERSN REVDAT 4 20-OCT-09 3F30 1 ATOM REVDAT 3 17-MAR-09 3F30 1 JRNL REVDAT 2 03-MAR-09 3F30 1 JRNL REVDAT 1 27-JAN-09 3F30 0 JRNL AUTH A.SERGANOV,L.HUANG,D.J.PATEL JRNL TITL COENZYME RECOGNITION AND GENE REGULATION BY A FLAVIN JRNL TITL 2 MONONUCLEOTIDE RIBOSWITCH. JRNL REF NATURE V. 458 233 2009 JRNL REFN ISSN 0028-0836 JRNL PMID 19169240 JRNL DOI 10.1038/NATURE07642 REMARK 2 REMARK 2 RESOLUTION. 3.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 7037 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.500 REMARK 3 FREE R VALUE TEST SET COUNT : 334 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.23 REMARK 3 REFLECTION IN BIN (WORKING SET) : 484 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.71 REMARK 3 BIN R VALUE (WORKING SET) : 0.2920 REMARK 3 BIN FREE R VALUE SET COUNT : 29 REMARK 3 BIN FREE R VALUE : 0.3150 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 2353 REMARK 3 HETEROGEN ATOMS : 103 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 96.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.23000 REMARK 3 B22 (A**2) : 0.23000 REMARK 3 B33 (A**2) : -0.35000 REMARK 3 B12 (A**2) : 0.12000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.444 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.368 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 43.621 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2726 ; 0.006 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4290 ; 1.036 ; 3.000 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 546 ; 0.050 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1164 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1086 ; 0.157 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1636 ; 0.276 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 89 ; 0.144 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.026 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 14 ; 0.110 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 1 ; 0.273 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2905 ; 0.533 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 4290 ; 0.867 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : X 1 X 9 REMARK 3 ORIGIN FOR THE GROUP (A): 2.6540 27.2060 14.6920 REMARK 3 T TENSOR REMARK 3 T11: -0.1016 T22: 1.0939 REMARK 3 T33: 1.4365 T12: 0.1313 REMARK 3 T13: -0.0597 T23: 0.0196 REMARK 3 L TENSOR REMARK 3 L11: 22.8984 L22: 9.1030 REMARK 3 L33: 9.3365 L12: 13.6136 REMARK 3 L13: -13.2539 L23: -9.1761 REMARK 3 S TENSOR REMARK 3 S11: -1.5072 S12: -2.0424 S13: -1.8594 REMARK 3 S21: 0.5609 S22: 1.3046 S23: -0.0137 REMARK 3 S31: -0.1112 S32: 0.1344 S33: 0.2026 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : X 10 X 30 REMARK 3 ORIGIN FOR THE GROUP (A): 44.7680 42.3070 9.2780 REMARK 3 T TENSOR REMARK 3 T11: -0.3715 T22: 0.1658 REMARK 3 T33: 0.2487 T12: -0.0669 REMARK 3 T13: -0.0438 T23: -0.0762 REMARK 3 L TENSOR REMARK 3 L11: 6.5062 L22: 1.3303 REMARK 3 L33: 4.6691 L12: -1.5694 REMARK 3 L13: -3.3499 L23: -0.4109 REMARK 3 S TENSOR REMARK 3 S11: -0.0225 S12: 0.2900 S13: -0.0866 REMARK 3 S21: -0.0299 S22: 0.0354 S23: -0.0903 REMARK 3 S31: -0.0849 S32: 0.8545 S33: -0.0129 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : X 31 X 48 REMARK 3 ORIGIN FOR THE GROUP (A): 17.3270 47.1300 17.6190 REMARK 3 T TENSOR REMARK 3 T11: -0.2604 T22: -0.1923 REMARK 3 T33: 0.1809 T12: 0.0308 REMARK 3 T13: 0.0791 T23: -0.0349 REMARK 3 L TENSOR REMARK 3 L11: 7.0246 L22: 4.9872 REMARK 3 L33: 1.6957 L12: -1.5764 REMARK 3 L13: 0.8016 L23: -1.7354 REMARK 3 S TENSOR REMARK 3 S11: 0.1507 S12: -0.5859 S13: -0.2293 REMARK 3 S21: 0.5136 S22: -0.0099 S23: 0.5207 REMARK 3 S31: -0.3267 S32: -0.2865 S33: -0.1408 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : X 49 X 60 REMARK 3 ORIGIN FOR THE GROUP (A): 22.6910 33.6620 35.5530 REMARK 3 T TENSOR REMARK 3 T11: 0.7916 T22: 0.2339 REMARK 3 T33: 0.5841 T12: 0.0478 REMARK 3 T13: 0.1196 T23: 0.4428 REMARK 3 L TENSOR REMARK 3 L11: 10.0972 L22: 15.5046 REMARK 3 L33: 12.3514 L12: 1.6811 REMARK 3 L13: -5.7243 L23: 10.8215 REMARK 3 S TENSOR REMARK 3 S11: -0.1323 S12: -1.4456 S13: -0.7595 REMARK 3 S21: 2.6165 S22: -0.6441 S23: 2.3423 REMARK 3 S31: 0.5747 S32: 0.2246 S33: 0.7764 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : X 61 X 84 REMARK 3 ORIGIN FOR THE GROUP (A): 22.2650 59.9030 14.9100 REMARK 3 T TENSOR REMARK 3 T11: 0.0404 T22: -0.2469 REMARK 3 T33: 0.1765 T12: 0.0464 REMARK 3 T13: 0.0806 T23: -0.0906 REMARK 3 L TENSOR REMARK 3 L11: 7.4378 L22: 8.5157 REMARK 3 L33: 3.8510 L12: -2.7958 REMARK 3 L13: 2.3624 L23: -0.2757 REMARK 3 S TENSOR REMARK 3 S11: -0.4034 S12: -0.1436 S13: 0.6779 REMARK 3 S21: 0.9330 S22: 0.1619 S23: 0.6303 REMARK 3 S31: -1.0883 S32: -0.1960 S33: 0.2415 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : X 85 X 112 REMARK 3 ORIGIN FOR THE GROUP (A): 23.8390 30.8570 16.1040 REMARK 3 T TENSOR REMARK 3 T11: -0.2300 T22: -0.0335 REMARK 3 T33: 0.6543 T12: 0.0127 REMARK 3 T13: 0.0619 T23: 0.0292 REMARK 3 L TENSOR REMARK 3 L11: 11.4604 L22: 1.5353 REMARK 3 L33: 3.0335 L12: -1.1050 REMARK 3 L13: 0.8346 L23: 0.0151 REMARK 3 S TENSOR REMARK 3 S11: 0.0180 S12: -0.0234 S13: -2.4683 REMARK 3 S21: 0.0198 S22: 0.0866 S23: 0.5239 REMARK 3 S31: 0.4231 S32: -0.3409 S33: -0.1046 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3F30 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-NOV-08. REMARK 100 THE DEPOSITION ID IS D_1000050082. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUL-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.606041 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7437 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.150 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 13.90 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 39.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.26 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 0.42800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC 5.2.0019 REMARK 200 STARTING MODEL: 3F2Q REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 MES-NA PH 6.5 10% PEG 4000 0.1 M REMARK 280 MGCL2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.14033 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 92.28067 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 92.28067 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 46.14033 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 U X 54 REMARK 465 U X 55 REMARK 465 U X 56 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG X 304 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G X 33 N7 REMARK 620 2 FMN X 200 O1P 88.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG X 305 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 U X 89 O4 REMARK 620 2 A X 92 OP2 84.4 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN X 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K X 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG X 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG X 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG X 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG X 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG X 314 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NCO X 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NCO X 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NCO X 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NCO X 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NCO X 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NCO X 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NCO X 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NCO X 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NCO X 410 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3F2Q RELATED DB: PDB REMARK 900 FMN BOUND, NATIVE DATA SET REMARK 900 RELATED ID: 3F2T RELATED DB: PDB REMARK 900 FMN BOUND, IRIDIUM SOAK REMARK 900 RELATED ID: 3F2W RELATED DB: PDB REMARK 900 FMN BOUND, BARIUM SOAK REMARK 900 RELATED ID: 3F2X RELATED DB: PDB REMARK 900 FMN BOUND, CESIUM SOAK REMARK 900 RELATED ID: 3F2Y RELATED DB: PDB REMARK 900 FMN BOUND, MANGANESE SOAK REMARK 900 RELATED ID: 3F4E RELATED DB: PDB REMARK 900 FMN BOUND, NATIVE DATA SET, SPLIT RNA REMARK 900 RELATED ID: 3F4G RELATED DB: PDB REMARK 900 RIBOFLAVIN BOUND, NATIVE DATA SET, SPLIT RNA REMARK 900 RELATED ID: 3F4H RELATED DB: PDB REMARK 900 ROSEOFLAVIN BOUND DBREF 3F30 X 3 109 GB 20095250 AE009951 2495 2601 SEQADV 3F30 GTP X 1 GB 20095250 INSERTION SEQADV 3F30 G X 2 GB 20095250 INSERTION SEQADV 3F30 U X 110 GB 20095250 INSERTION SEQADV 3F30 U X 111 GB 20095250 INSERTION SEQADV 3F30 CCC X 112 GB 20095250 INSERTION SEQRES 1 X 112 GTP G A U C U U C G G G G C SEQRES 2 X 112 A G G G U G A A A U U C C SEQRES 3 X 112 C G A C C G G U G G U A U SEQRES 4 X 112 A G U C C A C G A A A G U SEQRES 5 X 112 A U U U G C U U U G A U U SEQRES 6 X 112 U G G U G A A A U U C C A SEQRES 7 X 112 A A A C C G A C A G U A G SEQRES 8 X 112 A G U C U G G A U G A G A SEQRES 9 X 112 G A A G A U U CCC MODRES 3F30 GTP X 1 G GUANOSINE-5'-TRIPHOSPHATE MODRES 3F30 CCC X 112 C HET GTP X 1 32 HET CCC X 112 23 HET FMN X 200 31 HET K X 300 1 HET MG X 303 1 HET MG X 304 1 HET MG X 305 1 HET MG X 307 1 HET MG X 309 1 HET MG X 311 1 HET MG X 313 1 HET MG X 314 1 HET NCO X 401 7 HET NCO X 403 7 HET NCO X 404 7 HET NCO X 405 7 HET NCO X 406 7 HET NCO X 407 7 HET NCO X 408 7 HET NCO X 409 7 HET NCO X 410 7 HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE HETNAM CCC CYTIDINE-5'-PHOSPHATE-2',3'-CYCLIC PHOSPHATE HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM K POTASSIUM ION HETNAM MG MAGNESIUM ION HETNAM NCO COBALT HEXAMMINE(III) HETSYN FMN RIBOFLAVIN MONOPHOSPHATE FORMUL 1 GTP C10 H16 N5 O14 P3 FORMUL 1 CCC C9 H13 N3 O10 P2 FORMUL 2 FMN C17 H21 N4 O9 P FORMUL 3 K K 1+ FORMUL 4 MG 8(MG 2+) FORMUL 12 NCO 9(CO H18 N6 3+) LINK O3' GTP X 1 P G X 2 1555 1555 1.59 LINK O3' U X 111 P CCC X 112 1555 1555 1.60 LINK OP1 A X 22 MG MG X 314 1555 1555 2.42 LINK N7 G X 33 MG MG X 304 1555 1555 2.35 LINK O4 U X 89 MG MG X 305 1555 1555 1.96 LINK OP2 A X 92 MG MG X 305 1555 1555 2.41 LINK N7 G X 93 MG MG X 303 1555 1555 2.45 LINK O1P FMN X 200 MG MG X 304 1555 1555 2.48 SITE 1 AC1 13 G X 10 G X 11 G X 32 G X 33 SITE 2 AC1 13 A X 48 A X 49 G X 62 G X 84 SITE 3 AC1 13 A X 85 G X 98 A X 99 MG X 304 SITE 4 AC1 13 NCO X 401 SITE 1 AC2 2 G X 35 G X 36 SITE 1 AC3 1 G X 93 SITE 1 AC4 2 G X 33 FMN X 200 SITE 1 AC5 2 U X 89 A X 92 SITE 1 AC6 1 A X 38 SITE 1 AC7 2 A X 22 U X 23 SITE 1 AC8 5 A X 85 U X 96 G X 97 G X 98 SITE 2 AC8 5 FMN X 200 SITE 1 AC9 3 U X 37 A X 38 U X 39 SITE 1 BC1 2 G X 16 G X 17 SITE 1 BC2 5 GTP X 1 G X 2 A X 20 U X 110 SITE 2 BC2 5 U X 111 SITE 1 BC3 6 C X 46 G X 47 G X 57 C X 58 SITE 2 BC3 6 U X 60 U X 61 SITE 1 BC4 4 G X 41 U X 42 U X 64 C X 76 SITE 1 BC5 4 A X 49 A X 50 G X 51 U X 52 SITE 1 BC6 4 G X 33 U X 34 A X 40 G X 41 SITE 1 BC7 2 G X 19 A X 21 CRYST1 71.156 71.156 138.421 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014054 0.008114 0.000000 0.00000 SCALE2 0.000000 0.016228 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007224 0.00000 HETATM 1 PG GTP X 1 -1.963 37.219 13.927 1.00107.75 P HETATM 2 O1G GTP X 1 -2.081 38.286 12.861 1.00107.63 O HETATM 3 O2G GTP X 1 -0.598 36.569 13.842 1.00107.64 O HETATM 4 O3G GTP X 1 -3.034 36.173 13.711 1.00107.59 O HETATM 5 O3B GTP X 1 -2.140 37.927 15.370 1.00107.42 O HETATM 6 PB GTP X 1 -3.030 37.282 16.555 1.00106.97 P HETATM 7 O1B GTP X 1 -2.671 37.918 17.879 1.00106.79 O HETATM 8 O2B GTP X 1 -2.871 35.780 16.618 1.00107.01 O HETATM 9 O3A GTP X 1 -4.537 37.689 16.167 1.00106.63 O HETATM 10 PA GTP X 1 -5.724 37.531 17.242 1.00106.26 P HETATM 11 O1A GTP X 1 -7.035 37.323 16.520 1.00106.19 O HETATM 12 O2A GTP X 1 -5.804 38.742 18.142 1.00106.30 O HETATM 13 O5' GTP X 1 -5.313 36.192 18.043 1.00105.52 O HETATM 14 C5' GTP X 1 -5.040 36.204 19.427 1.00104.58 C HETATM 15 C4' GTP X 1 -6.170 35.506 20.172 1.00103.89 C HETATM 16 O4' GTP X 1 -7.350 35.507 19.399 1.00103.54 O HETATM 17 C3' GTP X 1 -5.853 34.045 20.428 1.00103.63 C HETATM 18 O3' GTP X 1 -5.262 33.869 21.698 1.00103.56 O HETATM 19 C2' GTP X 1 -7.171 33.290 20.330 1.00103.43 C HETATM 20 O2' GTP X 1 -7.810 33.255 21.588 1.00103.59 O HETATM 21 C1' GTP X 1 -7.951 34.224 19.399 1.00102.95 C HETATM 22 N9 GTP X 1 -7.997 33.644 18.033 1.00102.52 N HETATM 23 C8 GTP X 1 -7.354 34.108 16.913 1.00102.03 C HETATM 24 N7 GTP X 1 -7.652 33.298 15.869 1.00101.91 N HETATM 25 C5 GTP X 1 -8.476 32.319 16.303 1.00101.92 C HETATM 26 C6 GTP X 1 -9.079 31.236 15.665 1.00101.69 C HETATM 27 O6 GTP X 1 -8.902 31.024 14.466 1.00101.80 O HETATM 28 N1 GTP X 1 -9.892 30.390 16.388 1.00101.22 N HETATM 29 C2 GTP X 1 -10.106 30.603 17.734 1.00101.43 C HETATM 30 N2 GTP X 1 -10.888 29.779 18.422 1.00101.42 N HETATM 31 N3 GTP X 1 -9.507 31.677 18.361 1.00101.81 N HETATM 32 C4 GTP X 1 -8.704 32.524 17.661 1.00102.14 C