data_3F40 # _entry.id 3F40 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3F40 pdb_00003f40 10.2210/pdb3f40/pdb RCSB RCSB050118 ? ? WWPDB D_1000050118 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 390727 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 3F40 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2008-10-31 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title ;Crystal structure of NTF2-like protein of unknown function (YP_677363.1) from CYTOPHAGA HUTCHINSONII ATCC 33406 at 1.27 A resolution ; _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 3F40 _cell.length_a 58.720 _cell.length_b 60.280 _cell.length_c 63.330 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3F40 _symmetry.Int_Tables_number 20 _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'uncharacterized NTF2-like protein' 13642.481 1 ? ? ? ? 2 water nat water 18.015 146 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;G(MSE)KTQITTRDLVLEFIHALNTENFPAAKKRLNENFTFNGP(MSE)GHREGSERY(MSE)ND(MSE)EK(MSE)KFK YVVHK(MSE)FEEGNDVCLIYDIN(MSE)NGKTIAASGLYHLEKGEITSLHVYFDPRPLFEE ; _entity_poly.pdbx_seq_one_letter_code_can ;GMKTQITTRDLVLEFIHALNTENFPAAKKRLNENFTFNGPMGHREGSERYMNDMEKMKFKYVVHKMFEEGNDVCLIYDIN MNGKTIAASGLYHLEKGEITSLHVYFDPRPLFEE ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier 390727 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 MSE n 1 3 LYS n 1 4 THR n 1 5 GLN n 1 6 ILE n 1 7 THR n 1 8 THR n 1 9 ARG n 1 10 ASP n 1 11 LEU n 1 12 VAL n 1 13 LEU n 1 14 GLU n 1 15 PHE n 1 16 ILE n 1 17 HIS n 1 18 ALA n 1 19 LEU n 1 20 ASN n 1 21 THR n 1 22 GLU n 1 23 ASN n 1 24 PHE n 1 25 PRO n 1 26 ALA n 1 27 ALA n 1 28 LYS n 1 29 LYS n 1 30 ARG n 1 31 LEU n 1 32 ASN n 1 33 GLU n 1 34 ASN n 1 35 PHE n 1 36 THR n 1 37 PHE n 1 38 ASN n 1 39 GLY n 1 40 PRO n 1 41 MSE n 1 42 GLY n 1 43 HIS n 1 44 ARG n 1 45 GLU n 1 46 GLY n 1 47 SER n 1 48 GLU n 1 49 ARG n 1 50 TYR n 1 51 MSE n 1 52 ASN n 1 53 ASP n 1 54 MSE n 1 55 GLU n 1 56 LYS n 1 57 MSE n 1 58 LYS n 1 59 PHE n 1 60 LYS n 1 61 TYR n 1 62 VAL n 1 63 VAL n 1 64 HIS n 1 65 LYS n 1 66 MSE n 1 67 PHE n 1 68 GLU n 1 69 GLU n 1 70 GLY n 1 71 ASN n 1 72 ASP n 1 73 VAL n 1 74 CYS n 1 75 LEU n 1 76 ILE n 1 77 TYR n 1 78 ASP n 1 79 ILE n 1 80 ASN n 1 81 MSE n 1 82 ASN n 1 83 GLY n 1 84 LYS n 1 85 THR n 1 86 ILE n 1 87 ALA n 1 88 ALA n 1 89 SER n 1 90 GLY n 1 91 LEU n 1 92 TYR n 1 93 HIS n 1 94 LEU n 1 95 GLU n 1 96 LYS n 1 97 GLY n 1 98 GLU n 1 99 ILE n 1 100 THR n 1 101 SER n 1 102 LEU n 1 103 HIS n 1 104 VAL n 1 105 TYR n 1 106 PHE n 1 107 ASP n 1 108 PRO n 1 109 ARG n 1 110 PRO n 1 111 LEU n 1 112 PHE n 1 113 GLU n 1 114 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'CHU_0736, YP_677363.1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Cytophaga hutchinsonii ATCC 33406' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 269798 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc 33406 _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q11X43_CYTH3 _struct_ref.pdbx_db_accession Q11X43 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MKTQITTRDLVLEFIHALNTENFPAAKKRLNENFTFNGPMGHREGSERYMNDMEKMKFKYVVHKMFEEGNDVCLIYDINM NGKTIAASGLYHLEKGEITSLHVYFDPRPLFEE ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3F40 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 114 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q11X43 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 113 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 113 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3F40 _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q11X43 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 0 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 3F40 # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.05 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 40.11 _exptl_crystal.description 'THE STATISTICS REPORTED IN THE STATEMENTS ABOVE WERE COMPUTED WITH THE FRIEDEL PAIRS KEPT SEPARATE' _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details '0.2000M MgCl2, 30.0000% PEG-4000, 0.1M TRIS pH 8.5, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.details 'Flat collimating mirror, toroid focusing mirror' _diffrn_detector.pdbx_collection_date 2008-08-10 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Double crystal monochromator' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.97936 1.0 2 0.91162 1.0 3 0.97925 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL9-2 _diffrn_source.type 'SSRL BEAMLINE BL9-2' _diffrn_source.pdbx_wavelength_list 0.97936,0.91162,0.97925 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 3F40 _reflns.d_resolution_high 1.27 _reflns.d_resolution_low 27.217 _reflns.number_obs 29394 _reflns.pdbx_Rmerge_I_obs 0.056 _reflns.percent_possible_obs 94.900 _reflns.B_iso_Wilson_estimate 13.044 _reflns.observed_criterion_sigma_I -3.00 _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 8.270 _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal 1.27 1.32 12568 ? 6098 0.519 1.9 ? ? ? ? ? 97.80 ? 1 1.32 1.37 10914 ? 5258 0.419 2.3 ? ? ? ? ? 97.60 ? 2 1.37 1.43 11255 ? 5374 0.338 2.8 ? ? ? ? ? 97.50 ? 3 1.43 1.51 12511 ? 5914 0.230 3.9 ? ? ? ? ? 97.20 ? 4 1.51 1.60 11110 ? 5218 0.143 5.9 ? ? ? ? ? 96.90 ? 5 1.60 1.72 11665 ? 5385 0.107 7.5 ? ? ? ? ? 95.80 ? 6 1.72 1.90 12444 ? 5663 0.072 10.6 ? ? ? ? ? 94.80 ? 7 1.90 2.17 11680 ? 5207 0.052 14.2 ? ? ? ? ? 92.80 ? 8 2.17 2.73 12015 ? 5208 0.047 16.7 ? ? ? ? ? 90.70 ? 9 2.73 27.217 12021 ? 5072 0.044 18.9 ? ? ? ? ? 87.70 ? 10 # _refine.entry_id 3F40 _refine.ls_d_res_high 1.270 _refine.ls_d_res_low 27.217 _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 97.930 _refine.ls_number_reflns_obs 29370 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1.HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2.A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.183 _refine.ls_R_factor_R_work 0.182 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.199 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 1476 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 16.062 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -0.290 _refine.aniso_B[2][2] 0.120 _refine.aniso_B[3][3] 0.170 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.964 _refine.correlation_coeff_Fo_to_Fc_free 0.957 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.063 _refine.pdbx_overall_ESU_R_Free 0.053 _refine.overall_SU_ML 0.036 _refine.overall_SU_B 1.829 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 50.37 _refine.B_iso_min 7.16 _refine.occupancy_max 1.00 _refine.occupancy_min 0.20 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1040 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 150 _refine_hist.number_atoms_total 1190 _refine_hist.d_res_high 1.270 _refine_hist.d_res_low 27.217 # loop_ _refine_ls_restr.type _refine_ls_restr.pdbx_refine_id _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 'X-RAY DIFFRACTION' 1074 0.015 0.022 ? ? r_bond_other_d 'X-RAY DIFFRACTION' 727 0.001 0.020 ? ? r_angle_refined_deg 'X-RAY DIFFRACTION' 1462 1.519 1.948 ? ? r_angle_other_deg 'X-RAY DIFFRACTION' 1779 1.338 3.000 ? ? r_dihedral_angle_1_deg 'X-RAY DIFFRACTION' 142 5.184 5.000 ? ? r_dihedral_angle_2_deg 'X-RAY DIFFRACTION' 49 36.610 24.898 ? ? r_dihedral_angle_3_deg 'X-RAY DIFFRACTION' 196 9.938 15.000 ? ? r_dihedral_angle_4_deg 'X-RAY DIFFRACTION' 3 11.038 15.000 ? ? r_chiral_restr 'X-RAY DIFFRACTION' 153 0.072 0.200 ? ? r_gen_planes_refined 'X-RAY DIFFRACTION' 1255 0.009 0.020 ? ? r_gen_planes_other 'X-RAY DIFFRACTION' 224 0.003 0.020 ? ? r_mcbond_it 'X-RAY DIFFRACTION' 662 1.481 1.500 ? ? r_mcbond_other 'X-RAY DIFFRACTION' 265 0.811 1.500 ? ? r_mcangle_it 'X-RAY DIFFRACTION' 1083 2.283 2.000 ? ? r_scbond_it 'X-RAY DIFFRACTION' 412 3.531 3.000 ? ? r_scangle_it 'X-RAY DIFFRACTION' 379 4.763 4.500 ? ? r_rigid_bond_restr 'X-RAY DIFFRACTION' 1801 1.898 3.000 ? ? r_sphericity_free 'X-RAY DIFFRACTION' 152 7.735 3.000 ? ? r_sphericity_bonded 'X-RAY DIFFRACTION' 1767 4.828 3.000 ? ? # _refine_ls_shell.d_res_high 1.270 _refine_ls_shell.d_res_low 1.303 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 99.630 _refine_ls_shell.number_reflns_R_work 2053 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.235 _refine_ls_shell.R_factor_R_free 0.309 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 99 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 2152 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3F40 _struct.title ;Crystal structure of NTF2-like protein of unknown function (YP_677363.1) from CYTOPHAGA HUTCHINSONII ATCC 33406 at 1.27 A resolution ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;YP_677363.1, NTF2-like protein of unknown function, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, unknown function ; _struct_keywords.pdbx_keywords 'structural genomics, unknown function' _struct_keywords.entry_id 3F40 # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ;ANALYTICAL SIZE EXCLUSION CHROMATOGRAPHY MEASUREMENTS SUPPORT THE ASSIGNMENT OF A DIMER AS A SIGNIFICANT OLIGOMERIZATION STATE IN SOLUTION. ; # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 7 ? THR A 21 ? THR A 6 THR A 20 1 ? 15 HELX_P HELX_P2 2 ASN A 23 ? ARG A 30 ? ASN A 22 ARG A 29 1 ? 8 HELX_P HELX_P3 3 GLY A 46 ? LYS A 58 ? GLY A 45 LYS A 57 1 ? 13 HELX_P HELX_P4 4 PRO A 108 ? GLU A 113 ? PRO A 107 GLU A 112 5 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A MSE 2 C ? ? ? 1_555 A LYS 3 N ? ? A MSE 1 A LYS 2 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale2 covale both ? A PRO 40 C ? ? ? 1_555 A MSE 41 N ? ? A PRO 39 A MSE 40 1_555 ? ? ? ? ? ? ? 1.310 ? ? covale3 covale both ? A MSE 41 C ? ? ? 1_555 A GLY 42 N ? ? A MSE 40 A GLY 41 1_555 ? ? ? ? ? ? ? 1.311 ? ? covale4 covale both ? A TYR 50 C A ? ? 1_555 A MSE 51 N ? ? A TYR 49 A MSE 50 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale5 covale both ? A TYR 50 C B ? ? 1_555 A MSE 51 N ? ? A TYR 49 A MSE 50 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale6 covale both ? A MSE 51 C ? ? ? 1_555 A ASN 52 N ? ? A MSE 50 A ASN 51 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale7 covale both ? A ASP 53 C ? ? ? 1_555 A MSE 54 N A ? A ASP 52 A MSE 53 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale8 covale both ? A ASP 53 C ? ? ? 1_555 A MSE 54 N B ? A ASP 52 A MSE 53 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale9 covale both ? A ASP 53 C ? ? ? 1_555 A MSE 54 N C ? A ASP 52 A MSE 53 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale10 covale both ? A MSE 54 C A ? ? 1_555 A GLU 55 N A ? A MSE 53 A GLU 54 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale11 covale both ? A MSE 54 C B ? ? 1_555 A GLU 55 N B ? A MSE 53 A GLU 54 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale12 covale both ? A LYS 56 C A ? ? 1_555 A MSE 57 N A ? A LYS 55 A MSE 56 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale13 covale both ? A LYS 56 C B ? ? 1_555 A MSE 57 N B ? A LYS 55 A MSE 56 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale14 covale both ? A MSE 57 C A ? ? 1_555 A LYS 58 N ? ? A MSE 56 A LYS 57 1_555 ? ? ? ? ? ? ? 1.319 ? ? covale15 covale both ? A MSE 57 C B ? ? 1_555 A LYS 58 N ? ? A MSE 56 A LYS 57 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale16 covale both ? A MSE 57 C C ? ? 1_555 A LYS 58 N ? ? A MSE 56 A LYS 57 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale17 covale both ? A LYS 65 C ? ? ? 1_555 A MSE 66 N ? ? A LYS 64 A MSE 65 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale18 covale both ? A MSE 66 C ? ? ? 1_555 A PHE 67 N ? ? A MSE 65 A PHE 66 1_555 ? ? ? ? ? ? ? 1.319 ? ? covale19 covale both ? A ASN 80 C ? ? ? 1_555 A MSE 81 N ? ? A ASN 79 A MSE 80 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale20 covale both ? A MSE 81 C ? ? ? 1_555 A ASN 82 N ? ? A MSE 80 A ASN 81 1_555 ? ? ? ? ? ? ? 1.325 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 6 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLY A 42 ? GLU A 45 ? GLY A 41 GLU A 44 A 2 LEU A 31 ? GLY A 39 ? LEU A 30 GLY A 38 A 3 GLU A 98 ? TYR A 105 ? GLU A 97 TYR A 104 A 4 LYS A 84 ? GLU A 95 ? LYS A 83 GLU A 94 A 5 ASP A 72 ? MSE A 81 ? ASP A 71 MSE A 80 A 6 LYS A 60 ? GLU A 69 ? LYS A 59 GLU A 68 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O GLY A 42 ? O GLY A 41 N GLY A 39 ? N GLY A 38 A 2 3 N ASN A 32 ? N ASN A 31 O ILE A 99 ? O ILE A 98 A 3 4 O HIS A 103 ? O HIS A 102 N LEU A 91 ? N LEU A 90 A 4 5 O LYS A 84 ? O LYS A 83 N MSE A 81 ? N MSE A 80 A 5 6 O ILE A 76 ? O ILE A 75 N HIS A 64 ? N HIS A 63 # _atom_sites.entry_id 3F40 _atom_sites.fract_transf_matrix[1][1] 0.017030 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016589 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015790 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 MSE 2 1 1 MSE MSE A . n A 1 3 LYS 3 2 2 LYS LYS A . n A 1 4 THR 4 3 3 THR THR A . n A 1 5 GLN 5 4 4 GLN GLN A . n A 1 6 ILE 6 5 5 ILE ILE A . n A 1 7 THR 7 6 6 THR THR A . n A 1 8 THR 8 7 7 THR THR A . n A 1 9 ARG 9 8 8 ARG ARG A . n A 1 10 ASP 10 9 9 ASP ASP A . n A 1 11 LEU 11 10 10 LEU LEU A . n A 1 12 VAL 12 11 11 VAL VAL A . n A 1 13 LEU 13 12 12 LEU LEU A . n A 1 14 GLU 14 13 13 GLU GLU A . n A 1 15 PHE 15 14 14 PHE PHE A . n A 1 16 ILE 16 15 15 ILE ILE A . n A 1 17 HIS 17 16 16 HIS HIS A . n A 1 18 ALA 18 17 17 ALA ALA A . n A 1 19 LEU 19 18 18 LEU LEU A . n A 1 20 ASN 20 19 19 ASN ASN A . n A 1 21 THR 21 20 20 THR THR A . n A 1 22 GLU 22 21 21 GLU GLU A . n A 1 23 ASN 23 22 22 ASN ASN A . n A 1 24 PHE 24 23 23 PHE PHE A . n A 1 25 PRO 25 24 24 PRO PRO A . n A 1 26 ALA 26 25 25 ALA ALA A . n A 1 27 ALA 27 26 26 ALA ALA A . n A 1 28 LYS 28 27 27 LYS LYS A . n A 1 29 LYS 29 28 28 LYS LYS A . n A 1 30 ARG 30 29 29 ARG ARG A . n A 1 31 LEU 31 30 30 LEU LEU A . n A 1 32 ASN 32 31 31 ASN ASN A . n A 1 33 GLU 33 32 32 GLU GLU A . n A 1 34 ASN 34 33 33 ASN ASN A . n A 1 35 PHE 35 34 34 PHE PHE A . n A 1 36 THR 36 35 35 THR THR A . n A 1 37 PHE 37 36 36 PHE PHE A . n A 1 38 ASN 38 37 37 ASN ASN A . n A 1 39 GLY 39 38 38 GLY GLY A . n A 1 40 PRO 40 39 39 PRO PRO A . n A 1 41 MSE 41 40 40 MSE MSE A . n A 1 42 GLY 42 41 41 GLY GLY A . n A 1 43 HIS 43 42 42 HIS HIS A . n A 1 44 ARG 44 43 43 ARG ARG A . n A 1 45 GLU 45 44 44 GLU GLU A . n A 1 46 GLY 46 45 45 GLY GLY A . n A 1 47 SER 47 46 46 SER SER A . n A 1 48 GLU 48 47 47 GLU GLU A . n A 1 49 ARG 49 48 48 ARG ARG A . n A 1 50 TYR 50 49 49 TYR TYR A . n A 1 51 MSE 51 50 50 MSE MSE A . n A 1 52 ASN 52 51 51 ASN ASN A . n A 1 53 ASP 53 52 52 ASP ASP A . n A 1 54 MSE 54 53 53 MSE MSE A . n A 1 55 GLU 55 54 54 GLU GLU A . n A 1 56 LYS 56 55 55 LYS LYS A . n A 1 57 MSE 57 56 56 MSE MSE A . n A 1 58 LYS 58 57 57 LYS LYS A . n A 1 59 PHE 59 58 58 PHE PHE A . n A 1 60 LYS 60 59 59 LYS LYS A . n A 1 61 TYR 61 60 60 TYR TYR A . n A 1 62 VAL 62 61 61 VAL VAL A . n A 1 63 VAL 63 62 62 VAL VAL A . n A 1 64 HIS 64 63 63 HIS HIS A . n A 1 65 LYS 65 64 64 LYS LYS A . n A 1 66 MSE 66 65 65 MSE MSE A . n A 1 67 PHE 67 66 66 PHE PHE A . n A 1 68 GLU 68 67 67 GLU GLU A . n A 1 69 GLU 69 68 68 GLU GLU A . n A 1 70 GLY 70 69 69 GLY GLY A . n A 1 71 ASN 71 70 70 ASN ASN A . n A 1 72 ASP 72 71 71 ASP ASP A . n A 1 73 VAL 73 72 72 VAL VAL A . n A 1 74 CYS 74 73 73 CYS CYS A . n A 1 75 LEU 75 74 74 LEU LEU A . n A 1 76 ILE 76 75 75 ILE ILE A . n A 1 77 TYR 77 76 76 TYR TYR A . n A 1 78 ASP 78 77 77 ASP ASP A . n A 1 79 ILE 79 78 78 ILE ILE A . n A 1 80 ASN 80 79 79 ASN ASN A . n A 1 81 MSE 81 80 80 MSE MSE A . n A 1 82 ASN 82 81 81 ASN ASN A . n A 1 83 GLY 83 82 82 GLY GLY A . n A 1 84 LYS 84 83 83 LYS LYS A . n A 1 85 THR 85 84 84 THR THR A . n A 1 86 ILE 86 85 85 ILE ILE A . n A 1 87 ALA 87 86 86 ALA ALA A . n A 1 88 ALA 88 87 87 ALA ALA A . n A 1 89 SER 89 88 88 SER SER A . n A 1 90 GLY 90 89 89 GLY GLY A . n A 1 91 LEU 91 90 90 LEU LEU A . n A 1 92 TYR 92 91 91 TYR TYR A . n A 1 93 HIS 93 92 92 HIS HIS A . n A 1 94 LEU 94 93 93 LEU LEU A . n A 1 95 GLU 95 94 94 GLU GLU A . n A 1 96 LYS 96 95 95 LYS LYS A . n A 1 97 GLY 97 96 96 GLY GLY A . n A 1 98 GLU 98 97 97 GLU GLU A . n A 1 99 ILE 99 98 98 ILE ILE A . n A 1 100 THR 100 99 99 THR THR A . n A 1 101 SER 101 100 100 SER SER A . n A 1 102 LEU 102 101 101 LEU LEU A . n A 1 103 HIS 103 102 102 HIS HIS A . n A 1 104 VAL 104 103 103 VAL VAL A . n A 1 105 TYR 105 104 104 TYR TYR A . n A 1 106 PHE 106 105 105 PHE PHE A . n A 1 107 ASP 107 106 106 ASP ASP A . n A 1 108 PRO 108 107 107 PRO PRO A . n A 1 109 ARG 109 108 108 ARG ARG A . n A 1 110 PRO 110 109 109 PRO PRO A . n A 1 111 LEU 111 110 110 LEU LEU A . n A 1 112 PHE 112 111 111 PHE PHE A . n A 1 113 GLU 113 112 112 GLU GLU A . n A 1 114 GLU 114 113 ? ? ? A . n # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 114 114 HOH HOH A . B 2 HOH 2 115 115 HOH HOH A . B 2 HOH 3 116 116 HOH HOH A . B 2 HOH 4 117 117 HOH HOH A . B 2 HOH 5 118 118 HOH HOH A . B 2 HOH 6 119 119 HOH HOH A . B 2 HOH 7 120 120 HOH HOH A . B 2 HOH 8 121 121 HOH HOH A . B 2 HOH 9 122 122 HOH HOH A . B 2 HOH 10 123 123 HOH HOH A . B 2 HOH 11 124 124 HOH HOH A . B 2 HOH 12 125 125 HOH HOH A . B 2 HOH 13 126 126 HOH HOH A . B 2 HOH 14 127 127 HOH HOH A . B 2 HOH 15 128 128 HOH HOH A . B 2 HOH 16 129 129 HOH HOH A . B 2 HOH 17 130 130 HOH HOH A . B 2 HOH 18 131 131 HOH HOH A . B 2 HOH 19 132 132 HOH HOH A . B 2 HOH 20 133 133 HOH HOH A . B 2 HOH 21 134 134 HOH HOH A . B 2 HOH 22 135 135 HOH HOH A . B 2 HOH 23 136 136 HOH HOH A . B 2 HOH 24 137 137 HOH HOH A . B 2 HOH 25 138 138 HOH HOH A . B 2 HOH 26 139 139 HOH HOH A . B 2 HOH 27 140 140 HOH HOH A . B 2 HOH 28 141 141 HOH HOH A . B 2 HOH 29 142 142 HOH HOH A . B 2 HOH 30 143 143 HOH HOH A . B 2 HOH 31 144 144 HOH HOH A . B 2 HOH 32 145 145 HOH HOH A . B 2 HOH 33 146 146 HOH HOH A . B 2 HOH 34 147 147 HOH HOH A . B 2 HOH 35 148 1 HOH HOH A . B 2 HOH 36 149 2 HOH HOH A . B 2 HOH 37 150 3 HOH HOH A . B 2 HOH 38 151 4 HOH HOH A . B 2 HOH 39 152 5 HOH HOH A . B 2 HOH 40 153 6 HOH HOH A . B 2 HOH 41 154 7 HOH HOH A . B 2 HOH 42 155 8 HOH HOH A . B 2 HOH 43 156 9 HOH HOH A . B 2 HOH 44 157 10 HOH HOH A . B 2 HOH 45 158 11 HOH HOH A . B 2 HOH 46 159 12 HOH HOH A . B 2 HOH 47 160 13 HOH HOH A . B 2 HOH 48 161 14 HOH HOH A . B 2 HOH 49 162 15 HOH HOH A . B 2 HOH 50 163 16 HOH HOH A . B 2 HOH 51 164 17 HOH HOH A . B 2 HOH 52 165 18 HOH HOH A . B 2 HOH 53 166 19 HOH HOH A . B 2 HOH 54 167 20 HOH HOH A . B 2 HOH 55 168 21 HOH HOH A . B 2 HOH 56 169 22 HOH HOH A . B 2 HOH 57 170 23 HOH HOH A . B 2 HOH 58 171 24 HOH HOH A . B 2 HOH 59 172 25 HOH HOH A . B 2 HOH 60 173 26 HOH HOH A . B 2 HOH 61 174 27 HOH HOH A . B 2 HOH 62 175 28 HOH HOH A . B 2 HOH 63 176 29 HOH HOH A . B 2 HOH 64 177 30 HOH HOH A . B 2 HOH 65 178 31 HOH HOH A . B 2 HOH 66 179 32 HOH HOH A . B 2 HOH 67 180 33 HOH HOH A . B 2 HOH 68 181 34 HOH HOH A . B 2 HOH 69 182 35 HOH HOH A . B 2 HOH 70 183 36 HOH HOH A . B 2 HOH 71 184 37 HOH HOH A . B 2 HOH 72 185 38 HOH HOH A . B 2 HOH 73 186 39 HOH HOH A . B 2 HOH 74 187 40 HOH HOH A . B 2 HOH 75 188 41 HOH HOH A . B 2 HOH 76 189 42 HOH HOH A . B 2 HOH 77 190 43 HOH HOH A . B 2 HOH 78 191 44 HOH HOH A . B 2 HOH 79 192 45 HOH HOH A . B 2 HOH 80 193 46 HOH HOH A . B 2 HOH 81 194 47 HOH HOH A . B 2 HOH 82 195 48 HOH HOH A . B 2 HOH 83 196 49 HOH HOH A . B 2 HOH 84 197 50 HOH HOH A . B 2 HOH 85 198 51 HOH HOH A . B 2 HOH 86 199 52 HOH HOH A . B 2 HOH 87 200 53 HOH HOH A . B 2 HOH 88 201 54 HOH HOH A . B 2 HOH 89 202 55 HOH HOH A . B 2 HOH 90 203 56 HOH HOH A . B 2 HOH 91 204 57 HOH HOH A . B 2 HOH 92 205 58 HOH HOH A . B 2 HOH 93 206 59 HOH HOH A . B 2 HOH 94 207 60 HOH HOH A . B 2 HOH 95 208 61 HOH HOH A . B 2 HOH 96 209 62 HOH HOH A . B 2 HOH 97 210 63 HOH HOH A . B 2 HOH 98 211 64 HOH HOH A . B 2 HOH 99 212 65 HOH HOH A . B 2 HOH 100 213 66 HOH HOH A . B 2 HOH 101 214 67 HOH HOH A . B 2 HOH 102 215 68 HOH HOH A . B 2 HOH 103 216 70 HOH HOH A . B 2 HOH 104 217 71 HOH HOH A . B 2 HOH 105 218 72 HOH HOH A . B 2 HOH 106 219 73 HOH HOH A . B 2 HOH 107 220 74 HOH HOH A . B 2 HOH 108 221 75 HOH HOH A . B 2 HOH 109 222 76 HOH HOH A . B 2 HOH 110 223 77 HOH HOH A . B 2 HOH 111 224 78 HOH HOH A . B 2 HOH 112 225 79 HOH HOH A . B 2 HOH 113 226 80 HOH HOH A . B 2 HOH 114 227 81 HOH HOH A . B 2 HOH 115 228 82 HOH HOH A . B 2 HOH 116 229 83 HOH HOH A . B 2 HOH 117 230 84 HOH HOH A . B 2 HOH 118 231 85 HOH HOH A . B 2 HOH 119 232 86 HOH HOH A . B 2 HOH 120 233 87 HOH HOH A . B 2 HOH 121 234 88 HOH HOH A . B 2 HOH 122 235 89 HOH HOH A . B 2 HOH 123 236 90 HOH HOH A . B 2 HOH 124 237 91 HOH HOH A . B 2 HOH 125 238 92 HOH HOH A . B 2 HOH 126 239 93 HOH HOH A . B 2 HOH 127 240 94 HOH HOH A . B 2 HOH 128 241 95 HOH HOH A . B 2 HOH 129 242 96 HOH HOH A . B 2 HOH 130 243 97 HOH HOH A . B 2 HOH 131 244 98 HOH HOH A . B 2 HOH 132 245 99 HOH HOH A . B 2 HOH 133 246 100 HOH HOH A . B 2 HOH 134 247 101 HOH HOH A . B 2 HOH 135 248 102 HOH HOH A . B 2 HOH 136 249 103 HOH HOH A . B 2 HOH 137 250 104 HOH HOH A . B 2 HOH 138 251 105 HOH HOH A . B 2 HOH 139 252 106 HOH HOH A . B 2 HOH 140 253 107 HOH HOH A . B 2 HOH 141 254 108 HOH HOH A . B 2 HOH 142 255 109 HOH HOH A . B 2 HOH 143 256 110 HOH HOH A . B 2 HOH 144 257 111 HOH HOH A . B 2 HOH 145 258 112 HOH HOH A . B 2 HOH 146 259 113 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 2 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 41 A MSE 40 ? MET SELENOMETHIONINE 3 A MSE 51 A MSE 50 ? MET SELENOMETHIONINE 4 A MSE 54 A MSE 53 ? MET SELENOMETHIONINE 5 A MSE 57 A MSE 56 ? MET SELENOMETHIONINE 6 A MSE 66 A MSE 65 ? MET SELENOMETHIONINE 7 A MSE 81 A MSE 80 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1630 ? 1 MORE -11 ? 1 'SSA (A^2)' 11830 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 4_566 x,-y+1,-z+1 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 60.2800000000 0.0000000000 0.0000000000 -1.0000000000 63.3300000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-11-18 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-25 4 'Structure model' 1 3 2019-07-24 5 'Structure model' 1 4 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Author supporting evidence' 3 3 'Structure model' 'Refinement description' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' 7 5 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' pdbx_struct_assembly_auth_evidence 2 3 'Structure model' software 3 4 'Structure model' software 4 4 'Structure model' struct_conn 5 5 'Structure model' database_2 6 5 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.name' 3 4 'Structure model' '_software.classification' 4 4 'Structure model' '_software.contact_author' 5 4 'Structure model' '_software.contact_author_email' 6 4 'Structure model' '_software.language' 7 4 'Structure model' '_software.location' 8 4 'Structure model' '_software.name' 9 4 'Structure model' '_software.type' 10 4 'Structure model' '_software.version' 11 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 12 5 'Structure model' '_database_2.pdbx_DOI' 13 5 'Structure model' '_database_2.pdbx_database_accession' 14 5 'Structure model' '_struct_ref_seq_dif.details' # _phasing.method MAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.4.0067 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 1 PHENIX . ? package 'P.D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 2 SHELX . ? package 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 3 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 4 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 5 PDB_EXTRACT 3.006 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 XDS . ? ? ? ? 'data reduction' ? ? ? 7 SHELXD . ? ? ? ? phasing ? ? ? 8 autoSHARP . ? ? ? ? phasing ? ? ? 9 # _pdbx_entry_details.entry_id 3F40 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. ; _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ARG 8 ? CD ? A ARG 9 CD 2 1 Y 1 A ARG 8 ? NE ? A ARG 9 NE 3 1 Y 1 A ARG 8 ? CZ ? A ARG 9 CZ 4 1 Y 1 A ARG 8 ? NH1 ? A ARG 9 NH1 5 1 Y 1 A ARG 8 ? NH2 ? A ARG 9 NH2 6 1 Y 1 A LYS 28 ? CE ? A LYS 29 CE 7 1 Y 1 A LYS 28 ? NZ ? A LYS 29 NZ 8 1 Y 1 A ARG 43 ? CZ ? A ARG 44 CZ 9 1 Y 1 A ARG 43 ? NH1 ? A ARG 44 NH1 10 1 Y 1 A ARG 43 ? NH2 ? A ARG 44 NH2 11 1 Y 1 A GLU 47 ? CD ? A GLU 48 CD 12 1 Y 1 A GLU 47 ? OE1 ? A GLU 48 OE1 13 1 Y 1 A GLU 47 ? OE2 ? A GLU 48 OE2 14 1 Y 1 A GLU 54 ? CD ? A GLU 55 CD 15 1 Y 1 A GLU 54 ? OE1 ? A GLU 55 OE1 16 1 Y 1 A GLU 54 ? OE2 ? A GLU 55 OE2 17 1 Y 1 A LYS 55 ? CD ? A LYS 56 CD 18 1 Y 1 A LYS 55 ? CE ? A LYS 56 CE 19 1 Y 1 A LYS 55 ? NZ ? A LYS 56 NZ 20 1 Y 1 A LYS 83 ? CE ? A LYS 84 CE 21 1 Y 1 A LYS 83 ? NZ ? A LYS 84 NZ 22 1 Y 1 A GLU 112 ? CG ? A GLU 113 CG 23 1 Y 1 A GLU 112 ? CD ? A GLU 113 CD 24 1 Y 1 A GLU 112 ? OE1 ? A GLU 113 OE1 25 1 Y 1 A GLU 112 ? OE2 ? A GLU 113 OE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 0 ? A GLY 1 2 1 Y 1 A GLU 113 ? A GLU 114 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? #