HEADER OXIDOREDUCTASE 31-OCT-08 3F44 TITLE CRYSTAL STRUCTURE OF PUTATIVE MONOOXYGENASE (YP_193413.1) FROM TITLE 2 LACTOBACILLUS ACIDOPHILUS NCFM AT 1.55 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE MONOOXYGENASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTOBACILLUS ACIDOPHILUS NCFM; SOURCE 3 ORGANISM_TAXID: 272621; SOURCE 4 GENE: LBA0497, YP_193413.1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS YP_193413.1, PUTATIVE MONOOXYGENASE, STRUCTURAL GENOMICS, JOINT KEYWDS 2 CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, KEYWDS 3 PSI-2, UNKNOWN FUNCTION, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 6 27-DEC-23 3F44 1 REMARK SEQADV REVDAT 5 24-JUL-19 3F44 1 REMARK LINK REVDAT 4 25-OCT-17 3F44 1 REMARK REVDAT 3 13-JUL-11 3F44 1 VERSN REVDAT 2 24-FEB-09 3F44 1 VERSN REVDAT 1 18-NOV-08 3F44 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE MONOOXYGENASE (YP_193413.1) JRNL TITL 2 FROM LACTOBACILLUS ACIDOPHILUS NCFM AT 1.55 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.37 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 31524 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1592 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.59 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2218 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.40 REMARK 3 BIN R VALUE (WORKING SET) : 0.2450 REMARK 3 BIN FREE R VALUE SET COUNT : 109 REMARK 3 BIN FREE R VALUE : 0.2570 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1648 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 213 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 16.87 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.17000 REMARK 3 B22 (A**2) : -0.17000 REMARK 3 B33 (A**2) : 0.35000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.084 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.081 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.054 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.999 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1825 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1209 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2496 ; 1.584 ; 1.954 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3007 ; 1.239 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 247 ; 3.387 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 91 ;30.914 ;25.824 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 346 ; 9.948 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;20.708 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 281 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2079 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 339 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 315 ; 0.185 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1184 ; 0.144 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 867 ; 0.152 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 934 ; 0.075 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 188 ; 0.082 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 11 ; 0.200 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 42 ; 0.146 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 28 ; 0.130 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1190 ; 1.197 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 447 ; 0.200 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1838 ; 1.842 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 749 ; 3.412 ; 6.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 638 ; 4.551 ; 8.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 105 REMARK 3 RESIDUE RANGE : A 113 A 219 REMARK 3 ORIGIN FOR THE GROUP (A): 1.4810 25.4700 5.5970 REMARK 3 T TENSOR REMARK 3 T11: -0.0924 T22: -0.1061 REMARK 3 T33: -0.1199 T12: -0.0031 REMARK 3 T13: 0.0049 T23: -0.0041 REMARK 3 L TENSOR REMARK 3 L11: 1.4217 L22: 0.3633 REMARK 3 L33: 0.4940 L12: -0.0307 REMARK 3 L13: 0.2912 L23: -0.0659 REMARK 3 S TENSOR REMARK 3 S11: -0.0494 S12: 0.0718 S13: 0.0141 REMARK 3 S21: 0.0145 S22: 0.0516 S23: -0.0351 REMARK 3 S31: -0.0610 S32: 0.0260 S33: -0.0022 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. ATOM RECORDS CONTAIN RESIDUAL B FACTORS REMARK 3 ONLY. 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE REMARK 3 ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED REMARK 3 SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4. ACT REMARK 3 MOLECULES FROM THE CRYSTALLIZATION SOLUTION ARE MODELED. REMARK 4 REMARK 4 3F44 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-NOV-08. REMARK 100 THE DEPOSITION ID IS D_1000050122. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-OCT-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.94645,0.97967 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL REMARK 200 MONOCHROMETER REMARK 200 OPTICS : ADJUSTABLE FOCUSING MIRRORS IN K REMARK 200 -B GEOMETRY REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31526 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 26.371 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.7400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.61 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.61900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: THE STATISTICS REPORTED IN THE REMARK 200 STATEMENTS ABOVE REMARK 200 WERE COMPUTED WITH THE FRIEDEL PAIRS KEPT SEPARATE. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2000M CA(OAC)2, 20.0000% PEG-8000, REMARK 280 0.1M MES PH 6.0, NANODROP, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 51.69000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 51.69000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 20.48500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 51.69000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 51.69000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 20.48500 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 51.69000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 51.69000 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 20.48500 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 51.69000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 51.69000 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 20.48500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT CRYSTAL PACKING ANALYSIS SUGGESTS THE REMARK 300 ASSIGNMENT OF A MONOMER AS THE SIGNIFICANT OLIGOMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 ASP A 2 REMARK 465 ARG A 106 REMARK 465 ALA A 107 REMARK 465 LEU A 108 REMARK 465 ASN A 109 REMARK 465 SER A 110 REMARK 465 TYR A 111 REMARK 465 ALA A 112 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 62 CD NE CZ NH1 NH2 REMARK 470 LYS A 64 CE NZ REMARK 470 LYS A 89 CE NZ REMARK 470 LYS A 91 NZ REMARK 470 ASP A 113 CG OD1 OD2 REMARK 470 LYS A 121 NZ REMARK 470 GLU A 130 CD OE1 OE2 REMARK 470 LYS A 131 CE NZ REMARK 470 LYS A 182 CD CE NZ REMARK 470 VAL A 217 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MSE A 153 SE MSE A 153 CE -0.481 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 98 -66.36 -109.53 REMARK 500 ASN A 173 -179.38 -171.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 220 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 391715 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE DBREF 3F44 A 1 219 UNP Q5FLP2 Q5FLP2_LACAC 1 219 SEQADV 3F44 GLY A 0 UNP Q5FLP2 INSERTION SEQRES 1 A 220 GLY MSE ASP GLU THR PRO ILE PHE LYS ILE LYS LYS LEU SEQRES 2 A 220 THR ILE ALA GLU ASN ASP ARG SER GLU TYR ILE ARG TYR SEQRES 3 A 220 ALA GLU LYS ASN MSE HIS ASP SER ILE PRO ALA GLU GLU SEQRES 4 A 220 GLY THR LEU LEU ILE GLY SER GLY HIS ASP ASP ALA HIS SEQRES 5 A 220 GLY GLU ASP ASN TYR GLU ILE GLU VAL PHE ARG ASN LYS SEQRES 6 A 220 GLY ALA GLU ASP LEU HIS ILE ALA GLY SER HIS ALA ASP SEQRES 7 A 220 ASP PHE VAL GLU THR VAL ASN LYS ILE ALA THR LYS GLN SEQRES 8 A 220 LYS VAL ILE ASP LEU HIS PRO GLU VAL ILE THR THR LYS SEQRES 9 A 220 ALA GLN ARG ALA LEU ASN SER TYR ALA ASP ASN PHE VAL SEQRES 10 A 220 MSE ARG LEU ILE LYS VAL GLU VAL LYS ASP ALA ASP ALA SEQRES 11 A 220 GLU LYS PHE SER HIS ALA VAL LYS LYS GLU MSE THR THR SEQRES 12 A 220 SER MSE ALA SER GLU PRO GLY MSE GLU ILE MSE MSE SER SEQRES 13 A 220 GLY THR ASN ILE ASP ASN PRO ASN GLU TRP TYR PHE ILE SEQRES 14 A 220 GLU VAL TYR ALA ASN ASP GLU ALA TYR ASP ILE HIS VAL SEQRES 15 A 220 LYS THR PRO HIS TYR LYS GLU TYR ILE GLU GLU THR ASP SEQRES 16 A 220 GLY MSE VAL LYS SER ARG ASP VAL LYS THR LEU VAL ARG SEQRES 17 A 220 ASP THR LEU ALA THR GLN GLY ALA ILE VAL LEU ASP MODRES 3F44 MSE A 30 MET SELENOMETHIONINE MODRES 3F44 MSE A 117 MET SELENOMETHIONINE MODRES 3F44 MSE A 140 MET SELENOMETHIONINE MODRES 3F44 MSE A 144 MET SELENOMETHIONINE MODRES 3F44 MSE A 150 MET SELENOMETHIONINE MODRES 3F44 MSE A 153 MET SELENOMETHIONINE MODRES 3F44 MSE A 154 MET SELENOMETHIONINE MODRES 3F44 MSE A 196 MET SELENOMETHIONINE HET MSE A 30 8 HET MSE A 117 13 HET MSE A 140 13 HET MSE A 144 13 HET MSE A 150 13 HET MSE A 153 13 HET MSE A 154 13 HET MSE A 196 8 HET ACT A 220 4 HETNAM MSE SELENOMETHIONINE HETNAM ACT ACETATE ION FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 2 ACT C2 H3 O2 1- FORMUL 3 HOH *213(H2 O) HELIX 1 1 ASP A 18 ILE A 34 1 17 HELIX 2 2 ASN A 63 ALA A 72 1 10 HELIX 3 3 GLY A 73 ILE A 86 1 14 HELIX 4 4 ASP A 128 GLU A 147 1 20 HELIX 5 5 ASN A 173 VAL A 181 1 9 HELIX 6 6 THR A 183 THR A 193 1 11 SHEET 1 A10 ILE A 216 LEU A 218 0 SHEET 2 A10 ALA A 87 THR A 102 -1 N ILE A 100 O LEU A 218 SHEET 3 A10 MSE A 150 ASN A 158 -1 O THR A 157 N HIS A 96 SHEET 4 A10 ASN A 161 TYR A 171 -1 O GLU A 164 N ASN A 158 SHEET 5 A10 VAL A 116 VAL A 124 -1 N VAL A 122 O TRP A 165 SHEET 6 A10 VAL A 197 THR A 212 -1 O LYS A 198 N GLU A 123 SHEET 7 A10 THR A 40 ASP A 48 -1 N HIS A 47 O VAL A 206 SHEET 8 A10 HIS A 51 PHE A 61 -1 O TYR A 56 N GLY A 46 SHEET 9 A10 ILE A 6 ILE A 14 -1 N LEU A 12 O ASN A 55 SHEET 10 A10 ALA A 87 THR A 102 -1 O ILE A 93 N ILE A 9 LINK C ASN A 29 N MSE A 30 1555 1555 1.33 LINK C MSE A 30 N HIS A 31 1555 1555 1.33 LINK C VAL A 116 N MSE A 117 1555 1555 1.33 LINK C MSE A 117 N ARG A 118 1555 1555 1.34 LINK C GLU A 139 N MSE A 140 1555 1555 1.33 LINK C MSE A 140 N THR A 141 1555 1555 1.33 LINK C SER A 143 N MSE A 144 1555 1555 1.33 LINK C MSE A 144 N ALA A 145 1555 1555 1.34 LINK C GLY A 149 N MSE A 150 1555 1555 1.34 LINK C MSE A 150 N GLU A 151 1555 1555 1.33 LINK C ILE A 152 N MSE A 153 1555 1555 1.33 LINK C MSE A 153 N MSE A 154 1555 1555 1.34 LINK C MSE A 154 N SER A 155 1555 1555 1.32 LINK C GLY A 195 N MSE A 196 1555 1555 1.34 LINK C MSE A 196 N VAL A 197 1555 1555 1.33 CISPEP 1 ILE A 34 PRO A 35 0 2.52 SITE 1 AC1 6 GLU A 27 LYS A 28 THR A 141 THR A 142 SITE 2 AC1 6 HOH A 305 HOH A 313 CRYST1 103.380 103.380 40.970 90.00 90.00 90.00 I 4 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009673 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009673 0.000000 0.00000 SCALE3 0.000000 0.000000 0.024408 0.00000