data_3F4G # _entry.id 3F4G # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.378 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3F4G pdb_00003f4g 10.2210/pdb3f4g/pdb NDB UR0178 ? ? RCSB RCSB050134 ? ? WWPDB D_1000050134 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3F2Q 'FMN bound, native data set' unspecified PDB 3F2T 'FMN bound, iridium soak' unspecified PDB 3F2W 'FMN bound, barium soak' unspecified PDB 3F2X 'FMN bound, cesium soak' unspecified PDB 3F2Y 'FMN bound, manganese soak' unspecified PDB 3F30 'FMN bound, cobalt soak' unspecified PDB 3F4E 'FMN bound, native data set, split RNA' unspecified PDB 3F4H 'Roseoflavin bound' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3F4G _pdbx_database_status.recvd_initial_deposition_date 2008-10-31 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Serganov, A.A.' 1 'Huang, L.' 2 # _citation.id primary _citation.title 'Coenzyme recognition and gene regulation by a flavin mononucleotide riboswitch.' _citation.journal_abbrev Nature _citation.journal_volume 458 _citation.page_first 233 _citation.page_last 237 _citation.year 2009 _citation.journal_id_ASTM NATUAS _citation.country UK _citation.journal_id_ISSN 0028-0836 _citation.journal_id_CSD 0006 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19169240 _citation.pdbx_database_id_DOI 10.1038/nature07642 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Serganov, A.' 1 ? primary 'Huang, L.' 2 ? primary 'Patel, D.J.' 3 ? # _cell.entry_id 3F4G _cell.length_a 71.203 _cell.length_b 71.203 _cell.length_c 137.711 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3F4G _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'FMN riboswitch' 17455.389 1 ? U52C,A53U ? ;FMN riboswitch, 5' strand ; 2 polymer syn 'FMN riboswitch' 18092.771 1 ? ? ? ;FMN riboswitch, 3' strand ; 3 non-polymer syn 'POTASSIUM ION' 39.098 2 ? ? ? ? 4 non-polymer syn 'MAGNESIUM ION' 24.305 15 ? ? ? ? 5 non-polymer syn RIBOFLAVIN 376.364 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no no GGAUCUUCGGGGCAGGGUGAAAUUCCCGACCGGUGGUAUAGUCCACGAAAGCUU GGAUCUUCGGGGCAGGGUGAAAUUCCCGACCGGUGGUAUAGUCCACGAAAGCUU X ? 2 polyribonucleotide no no GCUUUGAUUUGGUGAAAUUCCAAAACCGACAGUAGAGUCUGGAUGAGAGAAGAUUC GCUUUGAUUUGGUGAAAUUCCAAAACCGACAGUAGAGUCUGGAUGAGAGAAGAUUC Y ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 A n 1 4 U n 1 5 C n 1 6 U n 1 7 U n 1 8 C n 1 9 G n 1 10 G n 1 11 G n 1 12 G n 1 13 C n 1 14 A n 1 15 G n 1 16 G n 1 17 G n 1 18 U n 1 19 G n 1 20 A n 1 21 A n 1 22 A n 1 23 U n 1 24 U n 1 25 C n 1 26 C n 1 27 C n 1 28 G n 1 29 A n 1 30 C n 1 31 C n 1 32 G n 1 33 G n 1 34 U n 1 35 G n 1 36 G n 1 37 U n 1 38 A n 1 39 U n 1 40 A n 1 41 G n 1 42 U n 1 43 C n 1 44 C n 1 45 A n 1 46 C n 1 47 G n 1 48 A n 1 49 A n 1 50 A n 1 51 G n 1 52 C n 1 53 U n 1 54 U n 2 1 G n 2 2 C n 2 3 U n 2 4 U n 2 5 U n 2 6 G n 2 7 A n 2 8 U n 2 9 U n 2 10 U n 2 11 G n 2 12 G n 2 13 U n 2 14 G n 2 15 A n 2 16 A n 2 17 A n 2 18 U n 2 19 U n 2 20 C n 2 21 C n 2 22 A n 2 23 A n 2 24 A n 2 25 A n 2 26 C n 2 27 C n 2 28 G n 2 29 A n 2 30 C n 2 31 A n 2 32 G n 2 33 U n 2 34 A n 2 35 G n 2 36 A n 2 37 G n 2 38 U n 2 39 C n 2 40 U n 2 41 G n 2 42 G n 2 43 A n 2 44 U n 2 45 G n 2 46 A n 2 47 G n 2 48 A n 2 49 G n 2 50 A n 2 51 A n 2 52 G n 2 53 A n 2 54 U n 2 55 U n 2 56 C n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample ? ? ? ? ? 'In vitro transcribed RNA from the Fusobacterium nucleatum impX gene' 2 1 sample ? ? ? ? ? 'In vitro transcribed RNA from the Fusobacterium nucleatum impX gene' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 GB AE009951 20095250 1 2495 AUCUUCGGGGCAGGGUGAAAUUCCCGACCGGUGGUAUAGUCCACGAAAGUAU ? 2 GB AE009951 20095250 2 2549 GCUUUGAUUUGGUGAAAUUCCAAAACCGACAGUAGAGUCUGGAUGAGAGAAGA ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3F4G X 3 ? 54 ? 20095250 2495 ? 2546 ? 3 54 2 2 3F4G Y 1 ? 53 ? 20095250 2549 ? 2601 ? 57 109 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3F4G G X 1 ? GB 20095250 ? ? insertion 1 1 1 3F4G G X 2 ? GB 20095250 ? ? insertion 2 2 1 3F4G C X 52 ? GB 20095250 U 2544 'engineered mutation' 52 3 1 3F4G U X 53 ? GB 20095250 A 2545 'engineered mutation' 53 4 2 3F4G U Y 54 ? GB 20095250 ? ? insertion 110 5 2 3F4G U Y 55 ? GB 20095250 ? ? insertion 111 6 2 3F4G C Y 56 ? GB 20095250 ? ? insertion 112 7 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 RBF non-polymer . RIBOFLAVIN 'RIBOFLAVINE; VITAMIN B2' 'C17 H20 N4 O6' 376.364 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.entry_id 3F4G _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.83 _exptl_crystal.density_percent_sol 56.61 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.4 _exptl_crystal_grow.pdbx_details ;0.1 M Tris-HCl pH 8.4 10% PEG 4000 0.2 M MgCl2, VAPOR DIFFUSION, HANGING DROP, temperature 293K ; _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 Tris-HCL ? ? ? 1 2 1 PEG4000 ? ? ? 1 3 1 MgCl2 ? ? ? 1 4 2 Tris-HCL ? ? ? 1 5 2 PEG4000 ? ? ? 1 6 2 MgCl2 ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2008-07-18 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.08 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X29A' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X29A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.08 # _reflns.entry_id 3F4G _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 20 _reflns.d_resolution_high 3.00 _reflns.number_obs 8439 _reflns.number_all 8473 _reflns.percent_possible_obs 99.6 _reflns.pdbx_Rmerge_I_obs 0.07 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 58.5 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 13.2 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 3 _reflns_shell.d_res_low 3.11 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.513 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 6 _reflns_shell.pdbx_redundancy 15.4 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 829 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3F4G _refine.ls_number_reflns_obs 7850 _refine.ls_number_reflns_all 8069 _refine.pdbx_ls_sigma_I 0 _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.00 _refine.ls_d_res_high 3.01 _refine.ls_percent_reflns_obs 97.28 _refine.ls_R_factor_obs 0.20876 _refine.ls_R_factor_all 0.20876 _refine.ls_R_factor_R_work 0.20634 _refine.ls_R_factor_R_free 0.26325 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.7 _refine.ls_number_reflns_R_free 384 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.950 _refine.correlation_coeff_Fo_to_Fc_free 0.924 _refine.B_iso_mean 72.201 _refine.aniso_B[1][1] 2.65 _refine.aniso_B[2][2] 2.65 _refine.aniso_B[3][3] -3.97 _refine.aniso_B[1][2] 1.32 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 3F4E _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free 0.447 _refine.overall_SU_ML 0.378 _refine.overall_SU_B 45.153 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 3F4G _refine_analyze.Luzzati_coordinate_error_obs 0.388 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 2340 _refine_hist.pdbx_number_atoms_ligand 44 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 2384 _refine_hist.d_res_high 3.01 _refine_hist.d_res_low 20.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.006 0.021 ? 2648 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.023 3.000 ? 4125 'X-RAY DIFFRACTION' ? r_chiral_restr 0.050 0.200 ? 548 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.005 0.020 ? 1159 'X-RAY DIFFRACTION' ? r_nbd_refined 0.170 0.200 ? 1078 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.279 0.200 ? 1653 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.190 0.200 ? 61 'X-RAY DIFFRACTION' ? r_metal_ion_refined 0.029 0.200 ? 1 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.164 0.200 ? 15 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.153 0.200 ? 1 'X-RAY DIFFRACTION' ? r_scbond_it 0.655 3.000 ? 2825 'X-RAY DIFFRACTION' ? r_scangle_it 1.049 4.500 ? 4125 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 3.01 _refine_ls_shell.d_res_low 3.081 _refine_ls_shell.number_reflns_R_work 576 _refine_ls_shell.R_factor_R_work 0.312 _refine_ls_shell.percent_reflns_obs 97.24 _refine_ls_shell.R_factor_R_free 0.291 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 24 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 600 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3F4G _struct.title 'Crystal structure of the FMN riboswitch bound to riboflavin.' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3F4G _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'riboflavin, FMN, riboswitch, transcription, RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 4 ? G N N 4 ? H N N 4 ? I N N 4 ? J N N 4 ? K N N 4 ? L N N 4 ? M N N 5 ? N N N 3 ? O N N 4 ? P N N 4 ? Q N N 4 ? R N N 4 ? S N N 4 ? T N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A A 14 OP2 ? ? ? 1_555 E MG . MG ? ? X A 14 X MG 306 1_555 ? ? ? ? ? ? ? 2.036 ? ? metalc2 metalc ? ? A A 22 OP1 ? ? ? 1_555 K MG . MG ? ? X A 22 X MG 314 1_555 ? ? ? ? ? ? ? 1.960 ? ? metalc3 metalc ? ? A U 23 OP2 ? ? ? 1_555 K MG . MG ? ? X U 23 X MG 314 1_555 ? ? ? ? ? ? ? 2.034 ? ? metalc4 metalc ? ? A G 28 O6 ? ? ? 1_555 G MG . MG ? ? X G 28 X MG 310 1_555 ? ? ? ? ? ? ? 2.201 ? ? metalc5 metalc ? ? B U 33 O4 ? ? ? 1_555 P MG . MG ? ? Y U 89 Y MG 305 1_555 ? ? ? ? ? ? ? 2.462 ? ? metalc6 metalc ? ? B A 36 OP2 ? ? ? 1_555 P MG . MG ? ? Y A 92 Y MG 305 1_555 ? ? ? ? ? ? ? 2.037 ? ? metalc7 metalc ? ? B C 39 OP1 ? ? ? 1_555 R MG . MG ? ? Y C 95 Y MG 319 1_555 ? ? ? ? ? ? ? 2.236 ? ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 B C 56 N3 ? ? X G 1 Y C 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 B C 56 O2 ? ? X G 1 Y C 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 B C 56 N4 ? ? X G 1 Y C 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 B U 55 O2 ? ? X G 2 Y U 111 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog5 hydrog ? ? A A 3 N1 ? ? ? 1_555 B U 54 N3 ? ? X A 3 Y U 110 1_555 ? ? ? ? ? ? 'A-U PAIR' ? ? ? hydrog6 hydrog ? ? A U 4 N3 ? ? ? 1_555 B A 53 N1 ? ? X U 4 Y A 109 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog7 hydrog ? ? A C 5 O2 ? ? ? 1_555 B G 52 N1 ? ? X C 5 Y G 108 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog8 hydrog ? ? A U 6 N3 ? ? ? 1_555 B A 51 N1 ? ? X U 6 Y A 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A U 6 O4 ? ? ? 1_555 B A 51 N6 ? ? X U 6 Y A 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A U 7 N3 ? ? ? 1_555 B A 50 N1 ? ? X U 7 Y A 106 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog11 hydrog ? ? A C 8 O2 ? ? ? 1_555 B G 49 N1 ? ? X C 8 Y G 105 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog12 hydrog ? ? A G 9 N2 ? ? ? 1_555 B A 48 N7 ? ? X G 9 Y A 104 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog13 hydrog ? ? A G 10 O6 ? ? ? 1_555 A G 47 N2 ? ? X G 10 X G 47 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog14 hydrog ? ? A G 11 N2 ? ? ? 1_555 A C 31 O2 ? ? X G 11 X C 31 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog15 hydrog ? ? A G 12 N2 ? ? ? 1_555 B G 37 N3 ? ? X G 12 Y G 93 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog16 hydrog ? ? A G 12 N3 ? ? ? 1_555 B G 37 N2 ? ? X G 12 Y G 93 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog17 hydrog ? ? A C 13 O2 ? ? ? 1_555 A G 28 N1 ? ? X C 13 X G 28 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog18 hydrog ? ? A A 14 N6 ? ? ? 1_555 A G 28 N3 ? ? X A 14 X G 28 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog19 hydrog ? ? A A 14 N7 ? ? ? 1_555 A G 28 N2 ? ? X A 14 X G 28 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog20 hydrog ? ? A G 15 N1 ? ? ? 1_555 A C 27 N3 ? ? X G 15 X C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 15 N2 ? ? ? 1_555 A C 27 O2 ? ? X G 15 X C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A G 15 O6 ? ? ? 1_555 A C 27 N4 ? ? X G 15 X C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A G 16 N1 ? ? ? 1_555 A C 26 N3 ? ? X G 16 X C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A G 16 N2 ? ? ? 1_555 A C 26 O2 ? ? X G 16 X C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 16 O6 ? ? ? 1_555 A C 26 N4 ? ? X G 16 X C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A G 17 N1 ? ? ? 1_555 A C 25 N3 ? ? X G 17 X C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A G 17 N2 ? ? ? 1_555 A C 25 O2 ? ? X G 17 X C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A G 17 O6 ? ? ? 1_555 A C 25 N4 ? ? X G 17 X C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A U 18 N3 ? ? ? 1_555 A A 22 N7 ? ? X U 18 X A 22 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog30 hydrog ? ? A U 18 O2 ? ? ? 1_555 A A 22 N6 ? ? X U 18 X A 22 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog31 hydrog ? ? A G 19 N2 ? ? ? 1_555 B A 34 N7 ? ? X G 19 Y A 90 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog32 hydrog ? ? A G 19 N3 ? ? ? 1_555 B A 34 N6 ? ? X G 19 Y A 90 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog33 hydrog ? ? A A 29 N1 ? ? ? 1_555 B U 38 N3 ? ? X A 29 Y U 94 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A A 29 N6 ? ? ? 1_555 B U 38 O4 ? ? X A 29 Y U 94 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A C 30 N3 ? ? ? 1_555 B G 37 N1 ? ? X C 30 Y G 93 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A C 30 N4 ? ? ? 1_555 B G 37 O6 ? ? X C 30 Y G 93 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A C 30 O2 ? ? ? 1_555 B G 37 N2 ? ? X C 30 Y G 93 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A C 31 N3 ? ? ? 1_555 B G 28 N1 ? ? X C 31 Y G 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A C 31 N4 ? ? ? 1_555 B G 28 O6 ? ? X C 31 Y G 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A C 31 O2 ? ? ? 1_555 B G 28 N2 ? ? X C 31 Y G 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A G 32 N1 ? ? ? 1_555 B C 27 N3 ? ? X G 32 Y C 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A G 32 N2 ? ? ? 1_555 B C 27 O2 ? ? X G 32 Y C 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A G 32 O6 ? ? ? 1_555 B C 27 N4 ? ? X G 32 Y C 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A G 33 N1 ? ? ? 1_555 A C 46 N3 ? ? X G 33 X C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A G 33 N2 ? ? ? 1_555 A C 46 O2 ? ? X G 33 X C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A G 33 O6 ? ? ? 1_555 A C 46 N4 ? ? X G 33 X C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A G 33 N2 ? ? ? 1_555 B A 48 N3 ? ? X G 33 Y A 104 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog48 hydrog ? ? A U 34 N3 ? ? ? 1_555 A A 45 N1 ? ? X U 34 X A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A U 34 O4 ? ? ? 1_555 A A 45 N6 ? ? X U 34 X A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A G 35 N1 ? ? ? 1_555 A C 44 N3 ? ? X G 35 X C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A G 35 N2 ? ? ? 1_555 A C 44 O2 ? ? X G 35 X C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A G 35 O6 ? ? ? 1_555 A C 44 N4 ? ? X G 35 X C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A G 36 N1 ? ? ? 1_555 A C 43 N3 ? ? X G 36 X C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A G 36 N2 ? ? ? 1_555 A C 43 O2 ? ? X G 36 X C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A G 36 O6 ? ? ? 1_555 A C 43 N4 ? ? X G 36 X C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A U 37 N3 ? ? ? 1_555 A A 40 N7 ? ? X U 37 X A 40 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog57 hydrog ? ? A U 37 O2 ? ? ? 1_555 A A 40 N6 ? ? X U 37 X A 40 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog58 hydrog ? ? A A 38 N6 ? ? ? 1_555 B G 14 N3 ? ? X A 38 Y G 70 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog59 hydrog ? ? A A 38 N7 ? ? ? 1_555 B G 14 N2 ? ? X A 38 Y G 70 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog60 hydrog ? ? A G 41 N2 ? ? ? 1_555 B A 7 N3 ? ? X G 41 Y A 63 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog61 hydrog ? ? A G 41 N1 ? ? ? 1_555 B C 26 N3 ? ? X G 41 Y C 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A G 41 N2 ? ? ? 1_555 B C 26 O2 ? ? X G 41 Y C 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A G 41 O6 ? ? ? 1_555 B C 26 N4 ? ? X G 41 Y C 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A U 42 N3 ? ? ? 1_555 B A 25 N1 ? ? X U 42 Y A 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A U 42 O4 ? ? ? 1_555 B A 25 N6 ? ? X U 42 Y A 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A A 49 N1 ? ? ? 1_555 B U 4 N3 ? ? X A 49 Y U 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A A 49 N6 ? ? ? 1_555 B U 4 O4 ? ? X A 49 Y U 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A A 50 N1 ? ? ? 1_555 B U 3 N3 ? ? X A 50 Y U 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A A 50 N6 ? ? ? 1_555 B U 3 O4 ? ? X A 50 Y U 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? A G 51 N1 ? ? ? 1_555 B C 2 N3 ? ? X G 51 Y C 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? A G 51 N2 ? ? ? 1_555 B C 2 O2 ? ? X G 51 Y C 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? A G 51 O6 ? ? ? 1_555 B C 2 N4 ? ? X G 51 Y C 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? A C 52 O2 ? ? ? 1_555 B G 1 N2 ? ? X C 52 Y G 57 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog74 hydrog ? ? B G 6 N2 ? ? ? 1_555 B C 27 O2 ? ? Y G 62 Y C 83 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog75 hydrog ? ? B U 8 N3 ? ? ? 1_555 B A 24 N1 ? ? Y U 64 Y A 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? B U 8 O4 ? ? ? 1_555 B A 24 N6 ? ? Y U 64 Y A 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? B U 9 N3 ? ? ? 1_555 B A 23 N1 ? ? Y U 65 Y A 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? B U 9 O4 ? ? ? 1_555 B A 23 N6 ? ? Y U 65 Y A 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? B U 10 N3 ? ? ? 1_555 B A 22 N1 ? ? Y U 66 Y A 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? B U 10 O4 ? ? ? 1_555 B A 22 N6 ? ? Y U 66 Y A 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? B G 11 N1 ? ? ? 1_555 B C 21 N3 ? ? Y G 67 Y C 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? B G 11 N2 ? ? ? 1_555 B C 21 O2 ? ? Y G 67 Y C 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? B G 11 O6 ? ? ? 1_555 B C 21 N4 ? ? Y G 67 Y C 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? B G 12 N1 ? ? ? 1_555 B C 20 N3 ? ? Y G 68 Y C 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? B G 12 N2 ? ? ? 1_555 B C 20 O2 ? ? Y G 68 Y C 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? B G 12 O6 ? ? ? 1_555 B C 20 N4 ? ? Y G 68 Y C 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? B U 13 N3 ? ? ? 1_555 B A 17 N7 ? ? Y U 69 Y A 73 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog88 hydrog ? ? B U 13 O2 ? ? ? 1_555 B A 17 N6 ? ? Y U 69 Y A 73 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog89 hydrog ? ? B A 29 N1 ? ? ? 1_555 B G 42 N1 ? ? Y A 85 Y G 98 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog90 hydrog ? ? B A 29 N6 ? ? ? 1_555 B G 42 O6 ? ? Y A 85 Y G 98 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog91 hydrog ? ? B C 30 N3 ? ? ? 1_555 B G 41 N1 ? ? Y C 86 Y G 97 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog92 hydrog ? ? B C 30 N4 ? ? ? 1_555 B G 41 O6 ? ? Y C 86 Y G 97 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog93 hydrog ? ? B C 30 O2 ? ? ? 1_555 B G 41 N2 ? ? Y C 86 Y G 97 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog94 hydrog ? ? B A 31 N1 ? ? ? 1_555 B U 40 N3 ? ? Y A 87 Y U 96 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog95 hydrog ? ? B A 31 N6 ? ? ? 1_555 B U 40 O4 ? ? Y A 87 Y U 96 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog96 hydrog ? ? B G 32 N1 ? ? ? 1_555 B C 39 N3 ? ? Y G 88 Y C 95 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog97 hydrog ? ? B G 32 N2 ? ? ? 1_555 B C 39 O2 ? ? Y G 88 Y C 95 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog98 hydrog ? ? B G 32 O6 ? ? ? 1_555 B C 39 N4 ? ? Y G 88 Y C 95 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog99 hydrog ? ? B U 33 N3 ? ? ? 1_555 B A 36 N7 ? ? Y U 89 Y A 92 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog100 hydrog ? ? B U 33 O2 ? ? ? 1_555 B A 36 N6 ? ? Y U 89 Y A 92 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software Y RBF 200 ? 11 'BINDING SITE FOR RESIDUE RBF Y 200' AC2 Software X K 300 ? 2 'BINDING SITE FOR RESIDUE K X 300' AC3 Software Y K 301 ? 3 'BINDING SITE FOR RESIDUE K Y 301' AC4 Software X MG 302 ? 1 'BINDING SITE FOR RESIDUE MG X 302' AC5 Software Y MG 303 ? 1 'BINDING SITE FOR RESIDUE MG Y 303' AC6 Software Y MG 305 ? 2 'BINDING SITE FOR RESIDUE MG Y 305' AC7 Software X MG 306 ? 2 'BINDING SITE FOR RESIDUE MG X 306' AC8 Software Y MG 309 ? 1 'BINDING SITE FOR RESIDUE MG Y 309' AC9 Software X MG 310 ? 1 'BINDING SITE FOR RESIDUE MG X 310' BC1 Software X MG 314 ? 2 'BINDING SITE FOR RESIDUE MG X 314' BC2 Software X MG 318 ? 1 'BINDING SITE FOR RESIDUE MG X 318' BC3 Software Y MG 319 ? 2 'BINDING SITE FOR RESIDUE MG Y 319' BC4 Software Y MG 321 ? 1 'BINDING SITE FOR RESIDUE MG Y 321' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 11 G A 10 ? G X 10 . ? 1_555 ? 2 AC1 11 G A 11 ? G X 11 . ? 1_555 ? 3 AC1 11 A A 48 ? A X 48 . ? 1_555 ? 4 AC1 11 A A 49 ? A X 49 . ? 1_555 ? 5 AC1 11 U B 5 ? U Y 61 . ? 1_555 ? 6 AC1 11 G B 28 ? G Y 84 . ? 1_555 ? 7 AC1 11 A B 29 ? A Y 85 . ? 1_555 ? 8 AC1 11 G B 37 ? G Y 93 . ? 1_555 ? 9 AC1 11 G B 42 ? G Y 98 . ? 1_555 ? 10 AC1 11 A B 43 ? A Y 99 . ? 1_555 ? 11 AC1 11 K N . ? K Y 301 . ? 1_555 ? 12 AC2 2 G A 36 ? G X 36 . ? 1_555 ? 13 AC2 2 U A 37 ? U X 37 . ? 1_555 ? 14 AC3 3 G B 41 ? G Y 97 . ? 1_555 ? 15 AC3 3 G B 42 ? G Y 98 . ? 1_555 ? 16 AC3 3 RBF M . ? RBF Y 200 . ? 1_555 ? 17 AC4 1 G A 19 ? G X 19 . ? 1_555 ? 18 AC5 1 G B 28 ? G Y 84 . ? 1_555 ? 19 AC6 2 U B 33 ? U Y 89 . ? 1_555 ? 20 AC6 2 A B 36 ? A Y 92 . ? 1_555 ? 21 AC7 2 A A 14 ? A X 14 . ? 1_555 ? 22 AC7 2 G A 15 ? G X 15 . ? 1_555 ? 23 AC8 1 G B 12 ? G Y 68 . ? 1_555 ? 24 AC9 1 G A 28 ? G X 28 . ? 1_555 ? 25 BC1 2 A A 22 ? A X 22 . ? 1_555 ? 26 BC1 2 U A 23 ? U X 23 . ? 1_555 ? 27 BC2 1 A A 49 ? A X 49 . ? 1_555 ? 28 BC3 2 G A 12 ? G X 12 . ? 1_555 ? 29 BC3 2 C B 39 ? C Y 95 . ? 1_555 ? 30 BC4 1 G B 35 ? G Y 91 . ? 1_555 ? # _database_PDB_matrix.entry_id 3F4G _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3F4G _atom_sites.fract_transf_matrix[1][1] 0.014044 _atom_sites.fract_transf_matrix[1][2] 0.008109 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016217 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007262 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C K MG N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G X . n A 1 2 G 2 2 2 G G X . n A 1 3 A 3 3 3 A A X . n A 1 4 U 4 4 4 U U X . n A 1 5 C 5 5 5 C C X . n A 1 6 U 6 6 6 U U X . n A 1 7 U 7 7 7 U U X . n A 1 8 C 8 8 8 C C X . n A 1 9 G 9 9 9 G G X . n A 1 10 G 10 10 10 G G X . n A 1 11 G 11 11 11 G G X . n A 1 12 G 12 12 12 G G X . n A 1 13 C 13 13 13 C C X . n A 1 14 A 14 14 14 A A X . n A 1 15 G 15 15 15 G G X . n A 1 16 G 16 16 16 G G X . n A 1 17 G 17 17 17 G G X . n A 1 18 U 18 18 18 U U X . n A 1 19 G 19 19 19 G G X . n A 1 20 A 20 20 20 A A X . n A 1 21 A 21 21 21 A A X . n A 1 22 A 22 22 22 A A X . n A 1 23 U 23 23 23 U U X . n A 1 24 U 24 24 24 U U X . n A 1 25 C 25 25 25 C C X . n A 1 26 C 26 26 26 C C X . n A 1 27 C 27 27 27 C C X . n A 1 28 G 28 28 28 G G X . n A 1 29 A 29 29 29 A A X . n A 1 30 C 30 30 30 C C X . n A 1 31 C 31 31 31 C C X . n A 1 32 G 32 32 32 G G X . n A 1 33 G 33 33 33 G G X . n A 1 34 U 34 34 34 U U X . n A 1 35 G 35 35 35 G G X . n A 1 36 G 36 36 36 G G X . n A 1 37 U 37 37 37 U U X . n A 1 38 A 38 38 38 A A X . n A 1 39 U 39 39 39 U U X . n A 1 40 A 40 40 40 A A X . n A 1 41 G 41 41 41 G G X . n A 1 42 U 42 42 42 U U X . n A 1 43 C 43 43 43 C C X . n A 1 44 C 44 44 44 C C X . n A 1 45 A 45 45 45 A A X . n A 1 46 C 46 46 46 C C X . n A 1 47 G 47 47 47 G G X . n A 1 48 A 48 48 48 A A X . n A 1 49 A 49 49 49 A A X . n A 1 50 A 50 50 50 A A X . n A 1 51 G 51 51 51 G G X . n A 1 52 C 52 52 52 C C X . n A 1 53 U 53 53 53 U U X . n A 1 54 U 54 54 54 U U X . n B 2 1 G 1 57 57 G G Y . n B 2 2 C 2 58 58 C C Y . n B 2 3 U 3 59 59 U U Y . n B 2 4 U 4 60 60 U U Y . n B 2 5 U 5 61 61 U U Y . n B 2 6 G 6 62 62 G G Y . n B 2 7 A 7 63 63 A A Y . n B 2 8 U 8 64 64 U U Y . n B 2 9 U 9 65 65 U U Y . n B 2 10 U 10 66 66 U U Y . n B 2 11 G 11 67 67 G G Y . n B 2 12 G 12 68 68 G G Y . n B 2 13 U 13 69 69 U U Y . n B 2 14 G 14 70 70 G G Y . n B 2 15 A 15 71 71 A A Y . n B 2 16 A 16 72 72 A A Y . n B 2 17 A 17 73 73 A A Y . n B 2 18 U 18 74 74 U U Y . n B 2 19 U 19 75 75 U U Y . n B 2 20 C 20 76 76 C C Y . n B 2 21 C 21 77 77 C C Y . n B 2 22 A 22 78 78 A A Y . n B 2 23 A 23 79 79 A A Y . n B 2 24 A 24 80 80 A A Y . n B 2 25 A 25 81 81 A A Y . n B 2 26 C 26 82 82 C C Y . n B 2 27 C 27 83 83 C C Y . n B 2 28 G 28 84 84 G G Y . n B 2 29 A 29 85 85 A A Y . n B 2 30 C 30 86 86 C C Y . n B 2 31 A 31 87 87 A A Y . n B 2 32 G 32 88 88 G G Y . n B 2 33 U 33 89 89 U U Y . n B 2 34 A 34 90 90 A A Y . n B 2 35 G 35 91 91 G G Y . n B 2 36 A 36 92 92 A A Y . n B 2 37 G 37 93 93 G G Y . n B 2 38 U 38 94 94 U U Y . n B 2 39 C 39 95 95 C C Y . n B 2 40 U 40 96 96 U U Y . n B 2 41 G 41 97 97 G G Y . n B 2 42 G 42 98 98 G G Y . n B 2 43 A 43 99 99 A A Y . n B 2 44 U 44 100 100 U U Y . n B 2 45 G 45 101 101 G G Y . n B 2 46 A 46 102 102 A A Y . n B 2 47 G 47 103 103 G G Y . n B 2 48 A 48 104 104 A A Y . n B 2 49 G 49 105 105 G G Y . n B 2 50 A 50 106 106 A A Y . n B 2 51 A 51 107 107 A A Y . n B 2 52 G 52 108 108 G G Y . n B 2 53 A 53 109 109 A A Y . n B 2 54 U 54 110 110 U U Y . n B 2 55 U 55 111 111 U U Y . n B 2 56 C 56 112 112 C C Y . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 K 1 300 300 K K X . D 4 MG 1 302 302 MG MG X . E 4 MG 1 306 306 MG MG X . F 4 MG 1 307 307 MG MG X . G 4 MG 1 310 310 MG MG X . H 4 MG 1 311 311 MG MG X . I 4 MG 1 312 312 MG MG X . J 4 MG 1 313 313 MG MG X . K 4 MG 1 314 314 MG MG X . L 4 MG 1 318 318 MG MG X . M 5 RBF 1 200 200 RBF RBF Y . N 3 K 1 301 301 K K Y . O 4 MG 1 303 303 MG MG Y . P 4 MG 1 305 305 MG MG Y . Q 4 MG 1 309 309 MG MG Y . R 4 MG 1 319 319 MG MG Y . S 4 MG 1 320 320 MG MG Y . T 4 MG 1 321 321 MG MG Y . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP1 ? A A 22 ? X A 22 ? 1_555 MG ? K MG . ? X MG 314 ? 1_555 OP2 ? A U 23 ? X U 23 ? 1_555 86.6 ? 2 O4 ? B U 33 ? Y U 89 ? 1_555 MG ? P MG . ? Y MG 305 ? 1_555 OP2 ? B A 36 ? Y A 92 ? 1_555 81.4 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-01-27 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2021-10-20 4 'Structure model' 1 3 2023-09-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Refinement description' 3 2 'Structure model' 'Version format compliance' 4 3 'Structure model' 'Database references' 5 3 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Data collection' 7 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' struct_ref_seq_dif 3 3 'Structure model' struct_site 4 4 'Structure model' chem_comp_atom 5 4 'Structure model' chem_comp_bond 6 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_ref_seq_dif.details' 4 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 2.6540 27.2060 14.6920 0.2081 0.8068 1.1097 0.2276 -0.4678 0.1562 32.3046 16.0774 18.9843 5.7648 -14.4338 -2.0656 -1.4117 0.1914 1.2203 -1.2914 -2.7606 1.4276 -0.2664 0.7683 -1.3123 'X-RAY DIFFRACTION' 2 ? refined 44.7680 42.3070 9.2780 -0.2716 -0.0849 0.2219 -0.0046 0.0035 -0.0714 2.8697 3.1409 6.2017 -0.2991 0.6668 0.6927 0.2658 -0.1445 -0.1213 0.0586 -0.1548 -0.0860 0.1464 -0.0821 0.4663 'X-RAY DIFFRACTION' 3 ? refined 17.3270 47.1300 17.6190 -0.1838 -0.1313 0.2175 0.0134 0.0708 0.0363 5.1475 2.5967 3.9848 0.4561 2.0711 0.1158 0.0344 0.1874 -0.2218 -0.4018 -0.2238 0.1724 0.8348 0.2351 -0.7380 'X-RAY DIFFRACTION' 4 ? refined 22.6910 33.6620 35.5530 0.6586 0.1740 0.5922 -0.3135 -0.0431 0.4001 11.9786 15.8220 29.0154 -1.9300 3.5464 8.5490 -0.5877 0.0104 0.5772 -1.2019 0.2264 0.9701 1.9411 -1.1164 1.0052 'X-RAY DIFFRACTION' 5 ? refined 22.2650 59.9030 14.9100 -0.0821 -0.1599 0.2069 0.0437 0.0887 -0.0525 7.8377 5.0463 3.2746 -1.9202 2.7882 -0.6973 -0.4273 0.3633 0.0640 -0.3313 0.6158 0.2219 0.6532 -0.7959 -0.2004 'X-RAY DIFFRACTION' 6 ? refined 23.8390 30.8570 16.1040 -0.1529 0.0064 0.6003 -0.0470 -0.0472 0.0641 7.5680 2.2076 1.7599 -0.6485 -0.1950 0.1851 0.3292 -0.0725 -0.2567 0.0827 -1.9886 0.5301 0.0607 0.3089 -0.5824 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 X 1 X 9 ? . . . . ? 'X-RAY DIFFRACTION' 2 2 X 10 X 30 ? . . . . ? 'X-RAY DIFFRACTION' 3 3 X 31 X 48 ? . . . . ? 'X-RAY DIFFRACTION' 4 4 Y 57 Y 60 ? . . . . ? 'X-RAY DIFFRACTION' 5 4 X 49 X 54 ? . . . . ? 'X-RAY DIFFRACTION' 6 5 Y 61 Y 84 ? . . . . ? 'X-RAY DIFFRACTION' 7 6 Y 85 Y 112 ? . . . . ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CBASS 'data collection' . ? 1 REFMAC refinement 5.2.0019 ? 2 HKL-2000 'data reduction' . ? 3 HKL-2000 'data scaling' . ? 4 REFMAC phasing 5.2.0019 ? 5 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C1'" Y G 62 ? ? "O4'" Y G 62 ? ? "C4'" Y G 62 ? ? 105.27 109.70 -4.43 0.70 N 2 1 "O4'" Y G 62 ? ? "C1'" Y G 62 ? ? N9 Y G 62 ? ? 113.13 108.50 4.63 0.70 N # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 X U 54 ? "C5'" ? A U 54 "C5'" 2 1 Y 1 X U 54 ? "C4'" ? A U 54 "C4'" 3 1 Y 1 X U 54 ? "O4'" ? A U 54 "O4'" 4 1 Y 1 X U 54 ? "C3'" ? A U 54 "C3'" 5 1 Y 1 X U 54 ? "O3'" ? A U 54 "O3'" 6 1 Y 1 X U 54 ? "C2'" ? A U 54 "C2'" 7 1 Y 1 X U 54 ? "O2'" ? A U 54 "O2'" 8 1 Y 1 X U 54 ? "C1'" ? A U 54 "C1'" 9 1 Y 1 X U 54 ? N1 ? A U 54 N1 10 1 Y 1 X U 54 ? C2 ? A U 54 C2 11 1 Y 1 X U 54 ? O2 ? A U 54 O2 12 1 Y 1 X U 54 ? N3 ? A U 54 N3 13 1 Y 1 X U 54 ? C4 ? A U 54 C4 14 1 Y 1 X U 54 ? O4 ? A U 54 O4 15 1 Y 1 X U 54 ? C5 ? A U 54 C5 16 1 Y 1 X U 54 ? C6 ? A U 54 C6 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 K K K N N 111 MG MG MG N N 112 RBF N1 N N N 113 RBF C2 C N N 114 RBF O2 O N N 115 RBF N3 N N N 116 RBF C4 C N N 117 RBF O4 O N N 118 RBF C4A C N N 119 RBF N5 N N N 120 RBF C5A C Y N 121 RBF C6 C Y N 122 RBF C7 C Y N 123 RBF C7M C N N 124 RBF C8 C Y N 125 RBF C8M C N N 126 RBF C9 C Y N 127 RBF C9A C Y N 128 RBF N10 N N N 129 RBF C10 C N N 130 RBF "C1'" C N N 131 RBF "C2'" C N S 132 RBF "O2'" O N N 133 RBF "C3'" C N S 134 RBF "O3'" O N N 135 RBF "C4'" C N R 136 RBF "O4'" O N N 137 RBF "C5'" C N N 138 RBF "O5'" O N N 139 RBF HN3 H N N 140 RBF HC6 H N N 141 RBF HC71 H N N 142 RBF HC72 H N N 143 RBF HC73 H N N 144 RBF HC81 H N N 145 RBF HC82 H N N 146 RBF HC83 H N N 147 RBF HC9 H N N 148 RBF HC11 H N N 149 RBF HC12 H N N 150 RBF "HC2'" H N N 151 RBF "HO2'" H N N 152 RBF "HC3'" H N N 153 RBF "HO3'" H N N 154 RBF "HC4'" H N N 155 RBF "HO4'" H N N 156 RBF HC51 H N N 157 RBF HC52 H N N 158 RBF "HO5'" H N N 159 U OP3 O N N 160 U P P N N 161 U OP1 O N N 162 U OP2 O N N 163 U "O5'" O N N 164 U "C5'" C N N 165 U "C4'" C N R 166 U "O4'" O N N 167 U "C3'" C N S 168 U "O3'" O N N 169 U "C2'" C N R 170 U "O2'" O N N 171 U "C1'" C N R 172 U N1 N N N 173 U C2 C N N 174 U O2 O N N 175 U N3 N N N 176 U C4 C N N 177 U O4 O N N 178 U C5 C N N 179 U C6 C N N 180 U HOP3 H N N 181 U HOP2 H N N 182 U "H5'" H N N 183 U "H5''" H N N 184 U "H4'" H N N 185 U "H3'" H N N 186 U "HO3'" H N N 187 U "H2'" H N N 188 U "HO2'" H N N 189 U "H1'" H N N 190 U H3 H N N 191 U H5 H N N 192 U H6 H N N 193 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 RBF N1 C2 sing N N 116 RBF N1 C10 doub N N 117 RBF C2 O2 doub N N 118 RBF C2 N3 sing N N 119 RBF N3 C4 sing N N 120 RBF N3 HN3 sing N N 121 RBF C4 O4 doub N N 122 RBF C4 C4A sing N N 123 RBF C4A N5 doub N N 124 RBF C4A C10 sing N N 125 RBF N5 C5A sing N N 126 RBF C5A C6 doub Y N 127 RBF C5A C9A sing Y N 128 RBF C6 C7 sing Y N 129 RBF C6 HC6 sing N N 130 RBF C7 C7M sing N N 131 RBF C7 C8 doub Y N 132 RBF C7M HC71 sing N N 133 RBF C7M HC72 sing N N 134 RBF C7M HC73 sing N N 135 RBF C8 C8M sing N N 136 RBF C8 C9 sing Y N 137 RBF C8M HC81 sing N N 138 RBF C8M HC82 sing N N 139 RBF C8M HC83 sing N N 140 RBF C9 C9A doub Y N 141 RBF C9 HC9 sing N N 142 RBF C9A N10 sing N N 143 RBF N10 C10 sing N N 144 RBF N10 "C1'" sing N N 145 RBF "C1'" "C2'" sing N N 146 RBF "C1'" HC11 sing N N 147 RBF "C1'" HC12 sing N N 148 RBF "C2'" "O2'" sing N N 149 RBF "C2'" "C3'" sing N N 150 RBF "C2'" "HC2'" sing N N 151 RBF "O2'" "HO2'" sing N N 152 RBF "C3'" "O3'" sing N N 153 RBF "C3'" "C4'" sing N N 154 RBF "C3'" "HC3'" sing N N 155 RBF "O3'" "HO3'" sing N N 156 RBF "C4'" "O4'" sing N N 157 RBF "C4'" "C5'" sing N N 158 RBF "C4'" "HC4'" sing N N 159 RBF "O4'" "HO4'" sing N N 160 RBF "C5'" "O5'" sing N N 161 RBF "C5'" HC51 sing N N 162 RBF "C5'" HC52 sing N N 163 RBF "O5'" "HO5'" sing N N 164 U OP3 P sing N N 165 U OP3 HOP3 sing N N 166 U P OP1 doub N N 167 U P OP2 sing N N 168 U P "O5'" sing N N 169 U OP2 HOP2 sing N N 170 U "O5'" "C5'" sing N N 171 U "C5'" "C4'" sing N N 172 U "C5'" "H5'" sing N N 173 U "C5'" "H5''" sing N N 174 U "C4'" "O4'" sing N N 175 U "C4'" "C3'" sing N N 176 U "C4'" "H4'" sing N N 177 U "O4'" "C1'" sing N N 178 U "C3'" "O3'" sing N N 179 U "C3'" "C2'" sing N N 180 U "C3'" "H3'" sing N N 181 U "O3'" "HO3'" sing N N 182 U "C2'" "O2'" sing N N 183 U "C2'" "C1'" sing N N 184 U "C2'" "H2'" sing N N 185 U "O2'" "HO2'" sing N N 186 U "C1'" N1 sing N N 187 U "C1'" "H1'" sing N N 188 U N1 C2 sing N N 189 U N1 C6 sing N N 190 U C2 O2 doub N N 191 U C2 N3 sing N N 192 U N3 C4 sing N N 193 U N3 H3 sing N N 194 U C4 O4 doub N N 195 U C4 C5 sing N N 196 U C5 C6 doub N N 197 U C5 H5 sing N N 198 U C6 H6 sing N N 199 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3F4G 'double helix' 3F4G 'a-form double helix' 3F4G 'hairpin loop' 3F4G 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 B C 56 1_555 1.025 0.264 -0.384 -15.165 -19.798 -5.801 1 X_G1:C112_Y X 1 ? Y 112 ? 19 1 1 A G 2 1_555 B U 55 1_555 -1.607 0.036 0.700 -0.071 -9.411 14.373 2 X_G2:U111_Y X 2 ? Y 111 ? ? 1 1 A A 3 1_555 B U 54 1_555 -0.617 0.178 0.294 4.678 -19.753 12.406 3 X_A3:U110_Y X 3 ? Y 110 ? ? 1 1 A U 4 1_555 B A 53 1_555 0.029 0.214 0.298 7.349 -24.385 21.786 4 X_U4:A109_Y X 4 ? Y 109 ? ? 1 1 A C 5 1_555 B G 52 1_555 1.393 0.571 0.585 4.544 -16.245 22.754 5 X_C5:G108_Y X 5 ? Y 108 ? ? 1 1 A U 6 1_555 B A 51 1_555 -0.350 0.089 -0.223 13.861 -20.565 6.627 6 X_U6:A107_Y X 6 ? Y 107 ? 20 1 1 A U 7 1_555 B A 50 1_555 -0.210 0.483 -0.092 10.337 -18.354 7.508 7 X_U7:A106_Y X 7 ? Y 106 ? ? ? 1 A C 8 1_555 B G 49 1_555 0.856 0.014 0.210 2.061 -22.333 13.231 8 X_C8:G105_Y X 8 ? Y 105 ? ? 1 1 A G 9 1_555 B A 48 1_555 6.702 -4.507 0.445 -36.819 -49.753 -12.512 9 X_G9:A104_Y X 9 ? Y 104 ? ? 10 1 A G 10 1_555 A G 47 1_555 -5.098 -0.162 0.942 19.945 -21.116 75.433 10 X_G10:G47_X X 10 ? X 47 ? ? ? 1 A G 33 1_555 A C 46 1_555 -0.182 -0.006 0.426 2.176 -20.297 5.568 11 X_G33:C46_X X 33 ? X 46 ? 19 1 1 A U 34 1_555 A A 45 1_555 -0.472 -0.003 0.179 2.330 -20.330 6.003 12 X_U34:A45_X X 34 ? X 45 ? 20 1 1 A G 35 1_555 A C 44 1_555 -0.226 -0.187 0.145 -4.198 -14.541 4.640 13 X_G35:C44_X X 35 ? X 44 ? 19 1 1 A G 36 1_555 A C 43 1_555 0.114 -0.083 0.104 -16.742 -11.151 0.639 14 X_G36:C43_X X 36 ? X 43 ? 19 1 1 A U 37 1_555 A A 40 1_555 4.230 -2.384 -0.565 8.462 -5.515 -94.580 15 X_U37:A40_X X 37 ? X 40 ? 24 4 1 A A 38 1_555 B G 14 1_555 -6.779 -4.373 1.044 -13.546 21.719 -3.530 16 X_A38:G70_Y X 38 ? Y 70 ? 11 10 1 B A 17 1_555 B U 13 1_555 -4.148 -1.899 1.130 -4.642 15.174 -86.045 17 Y_A73:U69_Y Y 73 ? Y 69 ? 24 4 1 B C 20 1_555 B G 12 1_555 -0.504 0.006 -0.079 11.482 -10.456 -0.811 18 Y_C76:G68_Y Y 76 ? Y 68 ? 19 1 1 B C 21 1_555 B G 11 1_555 0.211 -0.194 0.041 6.629 -11.568 2.876 19 Y_C77:G67_Y Y 77 ? Y 67 ? 19 1 1 B A 22 1_555 B U 10 1_555 -0.484 -0.276 0.450 -6.674 -7.749 4.104 20 Y_A78:U66_Y Y 78 ? Y 66 ? 20 1 1 B A 23 1_555 B U 9 1_555 0.666 -0.310 -0.067 -2.537 -16.973 0.148 21 Y_A79:U65_Y Y 79 ? Y 65 ? 20 1 1 B A 24 1_555 B U 8 1_555 -0.370 -0.260 0.051 4.869 0.992 10.868 22 Y_A80:U64_Y Y 80 ? Y 64 ? 20 1 1 B A 25 1_555 A U 42 1_555 -0.014 -0.017 -0.471 -7.473 -10.519 -5.531 23 Y_A81:U42_X Y 81 ? X 42 ? 20 1 1 B C 26 1_555 A G 41 1_555 0.034 -0.151 0.183 0.443 -22.749 4.899 24 Y_C82:G41_X Y 82 ? X 41 ? 19 1 1 B C 27 1_555 A G 32 1_555 -0.548 -0.061 0.626 -13.800 -9.099 -6.666 25 Y_C83:G32_X Y 83 ? X 32 ? 19 1 1 B G 28 1_555 A C 31 1_555 -0.358 -0.094 0.180 5.457 -13.276 0.228 26 Y_G84:C31_X Y 84 ? X 31 ? 19 1 1 B G 37 1_555 A C 30 1_555 -0.698 -0.402 0.301 1.278 -13.279 0.151 27 Y_G93:C30_X Y 93 ? X 30 ? 19 1 1 B U 38 1_555 A A 29 1_555 -0.203 -0.236 -0.354 12.636 -9.565 -1.869 28 Y_U94:A29_X Y 94 ? X 29 ? 20 1 1 A C 13 1_555 A G 28 1_555 3.552 0.739 1.016 -13.599 -10.462 48.953 29 X_C13:G28_X X 13 ? X 28 ? ? 5 1 A G 15 1_555 A C 27 1_555 0.096 -0.110 0.002 -2.774 -8.817 3.395 30 X_G15:C27_X X 15 ? X 27 ? 19 1 1 A G 16 1_555 A C 26 1_555 -0.104 0.003 -0.284 -10.033 -16.095 5.880 31 X_G16:C26_X X 16 ? X 26 ? 19 1 1 A G 17 1_555 A C 25 1_555 0.037 0.141 -0.181 -20.213 -8.290 0.856 32 X_G17:C25_X X 17 ? X 25 ? 19 1 1 A U 18 1_555 A A 22 1_555 4.742 -2.467 0.863 -1.523 13.261 -92.355 33 X_U18:A22_X X 18 ? X 22 ? 24 4 1 A G 19 1_555 B A 34 1_555 6.883 -4.291 -0.032 21.249 26.533 -2.885 34 X_G19:A90_Y X 19 ? Y 90 ? 11 10 1 A A 49 1_555 B U 4 1_555 -1.211 -0.079 0.164 9.198 -19.377 4.501 35 X_A49:U60_Y X 49 ? Y 60 ? 20 1 1 A A 50 1_555 B U 3 1_555 0.301 -0.022 0.531 5.805 -21.925 8.305 36 X_A50:U59_Y X 50 ? Y 59 ? 20 1 1 A G 51 1_555 B C 2 1_555 -0.547 -0.017 -0.083 -10.036 -18.011 6.319 37 X_G51:C58_Y X 51 ? Y 58 ? 19 1 1 A C 52 1_555 B G 1 1_555 -0.266 0.220 0.099 -5.895 -12.003 11.573 38 X_C52:G57_Y X 52 ? Y 57 ? ? 1 1 B A 29 1_555 B G 42 1_555 -0.478 1.486 -0.123 6.860 -14.765 -14.149 39 Y_A85:G98_Y Y 85 ? Y 98 ? 8 1 1 B C 30 1_555 B G 41 1_555 -0.182 -0.143 0.237 12.644 -22.540 3.085 40 Y_C86:G97_Y Y 86 ? Y 97 ? 19 1 1 B A 31 1_555 B U 40 1_555 -0.186 -0.321 0.430 -5.778 -25.622 0.515 41 Y_A87:U96_Y Y 87 ? Y 96 ? 20 1 1 B G 32 1_555 B C 39 1_555 0.762 -0.006 0.485 -19.321 -20.812 0.286 42 Y_G88:C95_Y Y 88 ? Y 95 ? 19 1 1 B U 33 1_555 B A 36 1_555 4.224 -2.094 -0.554 8.267 -2.107 -97.958 43 Y_U89:A92_Y Y 89 ? Y 92 ? 24 4 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 B C 56 1_555 A G 2 1_555 B U 55 1_555 0.588 -1.857 2.706 -9.477 1.378 24.695 -4.343 -3.248 2.226 3.078 21.168 26.460 1 XX_G1G2:U111C112_YY X 1 ? Y 112 ? X 2 ? Y 111 ? 1 A G 2 1_555 B U 55 1_555 A A 3 1_555 B U 54 1_555 -0.137 -1.021 3.020 3.348 5.406 36.104 -2.292 0.631 2.819 8.639 -5.351 36.641 2 XX_G2A3:U110U111_YY X 2 ? Y 111 ? X 3 ? Y 110 ? 1 A A 3 1_555 B U 54 1_555 A U 4 1_555 B A 53 1_555 0.497 -1.156 3.008 2.655 7.158 36.160 -2.687 -0.465 2.765 11.376 -4.219 36.931 3 XX_A3U4:A109U110_YY X 3 ? Y 110 ? X 4 ? Y 109 ? 1 A U 4 1_555 B A 53 1_555 A C 5 1_555 B G 52 1_555 0.280 -1.164 3.054 -0.058 10.232 35.885 -3.024 -0.445 2.635 16.205 0.092 37.269 4 XX_U4C5:G108A109_YY X 4 ? Y 109 ? X 5 ? Y 108 ? 1 A C 5 1_555 B G 52 1_555 A U 6 1_555 B A 51 1_555 -1.457 -1.623 2.848 3.290 4.850 23.101 -5.187 4.382 2.239 11.867 -8.051 23.823 5 XX_C5U6:A107G108_YY X 5 ? Y 108 ? X 6 ? Y 107 ? 1 A U 6 1_555 B A 51 1_555 A U 7 1_555 B A 50 1_555 -0.042 -1.271 3.475 -1.822 3.110 30.932 -2.988 -0.285 3.331 5.806 3.402 31.136 6 XX_U6U7:A106A107_YY X 6 ? Y 107 ? X 7 ? Y 106 ? 1 A U 7 1_555 B A 50 1_555 A C 8 1_555 B G 49 1_555 0.905 -1.284 3.591 2.612 0.657 37.568 -2.084 -1.028 3.622 1.019 -4.049 37.661 7 XX_U7C8:G105A106_YY X 7 ? Y 106 ? X 8 ? Y 105 ? 1 A C 8 1_555 B G 49 1_555 A G 9 1_555 B A 48 1_555 -3.271 -0.617 4.439 10.406 31.279 52.362 -2.470 3.831 3.036 32.115 -10.684 61.248 8 XX_C8G9:A104G105_YY X 8 ? Y 105 ? X 9 ? Y 104 ? 1 A G 10 1_555 A G 47 1_555 A G 33 1_555 A C 46 1_555 -1.030 -3.836 -2.983 129.220 -102.165 -18.683 0.603 -2.203 -2.038 55.045 69.622 -164.932 9 XX_G10G33:C46G47_XX X 10 ? X 47 ? X 33 ? X 46 ? 1 A G 33 1_555 A C 46 1_555 A U 34 1_555 A A 45 1_555 -0.850 -2.266 3.038 -3.652 3.600 27.794 -5.398 0.976 2.814 7.414 7.522 28.254 10 XX_G33U34:A45C46_XX X 33 ? X 46 ? X 34 ? X 45 ? 1 A U 34 1_555 A A 45 1_555 A G 35 1_555 A C 44 1_555 -0.144 -1.590 3.334 -2.410 10.104 33.358 -4.110 -0.107 2.754 17.094 4.077 34.894 11 XX_U34G35:C44A45_XX X 34 ? X 45 ? X 35 ? X 44 ? 1 A G 35 1_555 A C 44 1_555 A G 36 1_555 A C 43 1_555 0.579 -1.889 3.344 3.817 6.682 36.835 -3.784 -0.410 3.011 10.435 -5.960 37.603 12 XX_G35G36:C43C44_XX X 35 ? X 44 ? X 36 ? X 43 ? 1 A G 36 1_555 A C 43 1_555 A U 37 1_555 A A 40 1_555 -1.074 -1.228 2.668 11.898 2.930 82.686 -0.979 1.034 2.488 2.207 -8.962 83.427 13 XX_G36U37:A40C43_XX X 36 ? X 43 ? X 37 ? X 40 ? 1 A A 38 1_555 B G 14 1_555 B A 17 1_555 B U 13 1_555 -0.620 -0.521 2.936 -5.580 -0.045 1.211 -4.955 -27.511 1.233 -0.630 77.767 5.710 14 XY_A38A73:U69G70_YY X 38 ? Y 70 ? Y 73 ? Y 69 ? 1 B A 17 1_555 B U 13 1_555 B C 20 1_555 B G 12 1_555 2.749 -1.801 3.183 0.804 8.382 68.166 -1.893 -2.410 2.999 7.449 -0.715 68.622 15 YY_A73C76:G68U69_YY Y 73 ? Y 69 ? Y 76 ? Y 68 ? 1 B C 20 1_555 B G 12 1_555 B C 21 1_555 B G 11 1_555 -0.400 -1.686 3.261 -4.714 5.867 39.928 -3.062 0.068 3.020 8.501 6.830 40.603 16 YY_C76C77:G67G68_YY Y 76 ? Y 68 ? Y 77 ? Y 67 ? 1 B C 21 1_555 B G 11 1_555 B A 22 1_555 B U 10 1_555 -0.115 -1.720 3.202 -4.032 13.047 30.545 -4.897 -0.387 2.294 23.354 7.218 33.392 17 YY_C77A78:U66G67_YY Y 77 ? Y 67 ? Y 78 ? Y 66 ? 1 B A 22 1_555 B U 10 1_555 B A 23 1_555 B U 9 1_555 0.097 -1.344 3.172 7.773 5.390 35.984 -2.787 0.827 2.906 8.545 -12.323 37.166 18 YY_A78A79:U65U66_YY Y 78 ? Y 66 ? Y 79 ? Y 65 ? 1 B A 23 1_555 B U 9 1_555 B A 24 1_555 B U 8 1_555 0.931 -0.777 2.991 2.344 -0.646 24.251 -1.652 -1.523 3.085 -1.532 -5.562 24.371 19 YY_A79A80:U64U65_YY Y 79 ? Y 65 ? Y 80 ? Y 64 ? 1 B A 24 1_555 B U 8 1_555 B A 25 1_555 A U 42 1_555 -0.003 -3.078 3.539 5.693 9.214 25.085 -8.642 1.314 2.235 20.063 -12.397 27.289 20 YY_A80A81:U42U64_XY Y 80 ? Y 64 ? Y 81 ? X 42 ? 1 B A 25 1_555 A U 42 1_555 B C 26 1_555 A G 41 1_555 1.164 -1.491 2.900 -4.201 8.087 38.721 -2.968 -2.115 2.418 11.996 6.232 39.739 21 YY_A81C82:G41U42_XX Y 81 ? X 42 ? Y 82 ? X 41 ? 1 B C 26 1_555 A G 41 1_555 B C 27 1_555 A G 32 1_555 -1.103 -1.748 3.593 -4.225 4.317 30.995 -4.084 1.176 3.440 7.983 7.813 31.564 22 YY_C82C83:G32G41_XX Y 82 ? X 41 ? Y 83 ? X 32 ? 1 B C 27 1_555 A G 32 1_555 B G 28 1_555 A C 31 1_555 0.339 -0.411 2.929 -0.798 8.014 32.543 -1.875 -0.703 2.744 14.034 1.398 33.498 23 YY_C83G84:C31G32_XX Y 83 ? X 32 ? Y 84 ? X 31 ? 1 B G 28 1_555 A C 31 1_555 B G 37 1_555 A C 30 1_555 1.068 -1.938 3.150 -1.558 11.991 23.723 -6.789 -2.657 1.892 27.033 3.512 26.587 24 YY_G84G93:C30C31_XX Y 84 ? X 31 ? Y 93 ? X 30 ? 1 B G 37 1_555 A C 30 1_555 B U 38 1_555 A A 29 1_555 -0.952 -1.386 2.785 1.160 1.555 39.707 -2.190 1.513 2.703 2.288 -1.706 39.753 25 YY_G93U94:A29C30_XX Y 93 ? X 30 ? Y 94 ? X 29 ? 1 B U 38 1_555 A A 29 1_555 A C 13 1_555 A G 28 1_555 1.543 -1.406 3.943 -5.719 -1.096 49.949 -1.562 -2.302 3.784 -1.293 6.746 50.266 26 YX_U94C13:G28A29_XX Y 94 ? X 29 ? X 13 ? X 28 ? 1 A C 13 1_555 A G 28 1_555 A G 15 1_555 A C 27 1_555 -6.119 0.379 2.785 3.639 4.633 39.359 0.140 9.321 2.262 6.832 -5.366 39.780 27 XX_C13G15:C27G28_XX X 13 ? X 28 ? X 15 ? X 27 ? 1 A G 15 1_555 A C 27 1_555 A G 16 1_555 A C 26 1_555 0.551 -2.616 3.387 2.669 8.469 25.385 -7.629 -0.556 2.446 18.561 -5.849 26.869 28 XX_G15G16:C26C27_XX X 15 ? X 27 ? X 16 ? X 26 ? 1 A G 16 1_555 A C 26 1_555 A G 17 1_555 A C 25 1_555 -0.378 -2.076 3.268 0.750 9.872 38.038 -4.174 0.645 2.661 14.841 -1.127 39.259 29 XX_G16G17:C25C26_XX X 16 ? X 26 ? X 17 ? X 25 ? 1 A G 17 1_555 A C 25 1_555 A U 18 1_555 A A 22 1_555 -2.706 -1.670 3.064 -2.111 0.821 73.938 -1.412 2.186 3.114 0.682 1.755 73.968 30 XX_G17U18:A22C25_XX X 17 ? X 25 ? X 18 ? X 22 ? 1 A U 18 1_555 A A 22 1_555 A G 19 1_555 B A 34 1_555 1.644 -0.613 2.807 5.323 -2.741 -5.775 8.921 20.454 0.697 21.094 40.961 -8.317 31 XX_U18G19:A90A22_YX X 18 ? X 22 ? X 19 ? Y 90 ? 1 A A 49 1_555 B U 4 1_555 A A 50 1_555 B U 3 1_555 -0.211 -0.852 3.228 -4.197 5.266 39.062 -1.858 -0.166 3.097 7.804 6.221 39.616 32 XX_A49A50:U59U60_YY X 49 ? Y 60 ? X 50 ? Y 59 ? 1 A A 50 1_555 B U 3 1_555 A G 51 1_555 B C 2 1_555 -0.251 -2.373 3.475 -0.090 10.480 25.013 -7.510 0.516 2.311 22.954 0.197 27.088 33 XX_A50G51:C58U59_YY X 50 ? Y 59 ? X 51 ? Y 58 ? 1 A G 51 1_555 B C 2 1_555 A C 52 1_555 B G 1 1_555 0.000 -1.257 3.013 -2.181 5.989 32.444 -3.109 -0.328 2.738 10.591 3.857 33.047 34 XX_G51C52:G57C58_YY X 51 ? Y 58 ? X 52 ? Y 57 ? 1 B A 29 1_555 B G 42 1_555 B C 30 1_555 B G 41 1_555 1.073 -1.105 2.989 -6.381 4.008 32.528 -2.499 -2.783 2.587 7.038 11.204 33.366 35 YY_A85C86:G97G98_YY Y 85 ? Y 98 ? Y 86 ? Y 97 ? 1 B C 30 1_555 B G 41 1_555 B A 31 1_555 B U 40 1_555 -0.268 -1.986 3.321 -3.716 16.749 37.067 -4.520 0.015 2.270 24.785 5.499 40.718 36 YY_C86A87:U96G97_YY Y 86 ? Y 97 ? Y 87 ? Y 96 ? 1 B A 31 1_555 B U 40 1_555 B G 32 1_555 B C 39 1_555 0.043 -1.544 3.517 6.442 7.531 40.245 -3.019 0.653 3.160 10.748 -9.195 41.398 37 YY_A87G88:C95U96_YY Y 87 ? Y 96 ? Y 88 ? Y 95 ? 1 B G 32 1_555 B C 39 1_555 B U 33 1_555 B A 36 1_555 -0.835 -1.058 2.618 10.683 -3.022 72.957 -0.806 0.966 2.529 -2.528 -8.934 73.681 38 YY_G88U89:A92C95_YY Y 88 ? Y 95 ? Y 89 ? Y 92 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'POTASSIUM ION' K 4 'MAGNESIUM ION' MG 5 RIBOFLAVIN RBF # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3F4E _pdbx_initial_refinement_model.details ? #