HEADER OXIDOREDUCTASE 04-NOV-08 3F5S TITLE CRYSTAL STRUCTURE OF PUTATITVE SHORT CHAIN DEHYDROGENASE FROM SHIGELLA TITLE 2 FLEXNERI 2A STR. 301 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHIGELLA FLEXNERI; SOURCE 3 ORGANISM_TAXID: 623; SOURCE 4 STRAIN: 2A STR. 301; SOURCE 5 GENE: AAP16771.1, S1358, SF1273, YCIK; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)CODON+RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: BC-PSGX3(BC) KEYWDS STRUCTURAL GENOMICS, PROTEIN STRUCTURE INITIATIVE, NEW YORK SGX KEYWDS 2 RESEARCH CENTER FOR STRUCTURAL GENOMICS, NYSGXRC, DEHYDROGENASE, KEYWDS 3 PSI-2, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR V.N.MALASHKEVICH,R.TORO,J.M.SAUDER,S.K.BURLEY,S.C.ALMO,NEW YORK SGX AUTHOR 2 RESEARCH CENTER FOR STRUCTURAL GENOMICS (NYSGXRC) REVDAT 7 27-DEC-23 3F5S 1 REMARK REVDAT 6 10-FEB-21 3F5S 1 AUTHOR JRNL REVDAT 5 14-NOV-18 3F5S 1 AUTHOR REVDAT 4 25-OCT-17 3F5S 1 REMARK REVDAT 3 13-JUL-11 3F5S 1 VERSN REVDAT 2 24-FEB-09 3F5S 1 VERSN REVDAT 1 25-NOV-08 3F5S 0 JRNL AUTH V.N.MALASHKEVICH,R.TORO,J.M.SAUDER,S.K.BURLEY,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF PUTATITVE SHORT CHAIN DEHYDROGENASE JRNL TITL 2 FROM SHIGELLA FLEXNERI 2A STR. 301 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.36 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.36 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 7.99 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 88705 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4452 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.36 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.39 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5349 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2510 REMARK 3 BIN FREE R VALUE SET COUNT : 298 REMARK 3 BIN FREE R VALUE : 0.2640 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3519 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 251 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.03000 REMARK 3 B33 (A**2) : -0.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.01000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.060 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.062 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.034 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.679 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3652 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4958 ; 1.463 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 466 ; 6.013 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 176 ;35.232 ;24.091 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 641 ;14.164 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 35 ;16.964 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 559 ; 0.097 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2781 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2277 ; 1.117 ; 3.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3664 ; 3.063 ;50.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1375 ; 5.864 ;50.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1287 ; 1.656 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 241 REMARK 3 ORIGIN FOR THE GROUP (A): 11.4519 28.2815 16.4093 REMARK 3 T TENSOR REMARK 3 T11: -0.0083 T22: -0.0119 REMARK 3 T33: -0.0158 T12: -0.0062 REMARK 3 T13: -0.0027 T23: -0.0027 REMARK 3 L TENSOR REMARK 3 L11: 0.9592 L22: 0.1126 REMARK 3 L33: 0.5642 L12: -0.1227 REMARK 3 L13: -0.1276 L23: 0.0389 REMARK 3 S TENSOR REMARK 3 S11: -0.0057 S12: 0.1581 S13: -0.0252 REMARK 3 S21: -0.0242 S22: -0.0157 S23: 0.0125 REMARK 3 S31: -0.0474 S32: 0.0165 S33: 0.0214 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 5 B 242 REMARK 3 ORIGIN FOR THE GROUP (A): -11.1900 27.7955 42.1601 REMARK 3 T TENSOR REMARK 3 T11: -0.0059 T22: -0.0071 REMARK 3 T33: -0.0259 T12: 0.0038 REMARK 3 T13: -0.0046 T23: 0.0024 REMARK 3 L TENSOR REMARK 3 L11: 0.8024 L22: 0.2525 REMARK 3 L33: 0.3274 L12: 0.1613 REMARK 3 L13: -0.2008 L23: -0.0137 REMARK 3 S TENSOR REMARK 3 S11: 0.0028 S12: -0.1062 S13: -0.0242 REMARK 3 S21: 0.0447 S22: -0.0296 S23: -0.0241 REMARK 3 S31: -0.0154 S32: -0.0165 S33: 0.0267 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3F5S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-NOV-08. REMARK 100 THE DEPOSITION ID IS D_1000050181. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-OCT-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 184342 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.340 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.3 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.9210 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.34 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.39 REMARK 200 COMPLETENESS FOR SHELL (%) : 77.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : 0.45200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: RESOLVE 2.13, SHELXS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG4000, 0.1M TRIS-HCL, 0.2 SODIUM REMARK 280 ACETATE, PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 33.70700 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 LEU A 3 REMARK 465 LYS A 4 REMARK 465 ALA A 198 REMARK 465 MET A 199 REMARK 465 ARG A 200 REMARK 465 ALA A 201 REMARK 465 SER A 202 REMARK 465 ALA A 203 REMARK 465 PHE A 204 REMARK 465 PRO A 205 REMARK 465 THR A 206 REMARK 465 GLU A 207 REMARK 465 ASP A 208 REMARK 465 PRO A 242 REMARK 465 GLY A 243 REMARK 465 ARG A 244 REMARK 465 LYS A 245 REMARK 465 PRO A 246 REMARK 465 GLY A 247 REMARK 465 GLU A 248 REMARK 465 GLY A 249 REMARK 465 HIS A 250 REMARK 465 HIS A 251 REMARK 465 HIS A 252 REMARK 465 HIS A 253 REMARK 465 HIS A 254 REMARK 465 HIS A 255 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 LEU B 3 REMARK 465 LYS B 4 REMARK 465 ALA B 198 REMARK 465 MET B 199 REMARK 465 ARG B 200 REMARK 465 ALA B 201 REMARK 465 SER B 202 REMARK 465 ALA B 203 REMARK 465 PHE B 204 REMARK 465 PRO B 205 REMARK 465 THR B 206 REMARK 465 GLU B 207 REMARK 465 ASP B 208 REMARK 465 GLY B 243 REMARK 465 ARG B 244 REMARK 465 LYS B 245 REMARK 465 PRO B 246 REMARK 465 GLY B 247 REMARK 465 GLU B 248 REMARK 465 GLY B 249 REMARK 465 HIS B 250 REMARK 465 HIS B 251 REMARK 465 HIS B 252 REMARK 465 HIS B 253 REMARK 465 HIS B 254 REMARK 465 HIS B 255 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 389 O HOH B 463 1.46 REMARK 500 NH1 ARG A 231 NH1 ARG A 232 1.70 REMARK 500 NH1 ARG B 186 O HOH B 502 2.10 REMARK 500 NH2 ARG B 154 OD1 ASP B 239 2.15 REMARK 500 NH1 ARG B 11 O HOH B 265 2.16 REMARK 500 O ARG B 184 O HOH B 416 2.18 REMARK 500 CE MET B 28 CG2 THR B 58 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 313 O HOH B 340 2646 1.40 REMARK 500 O HOH B 270 O HOH B 474 1554 1.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 186 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 142 76.04 -162.73 REMARK 500 SER A 149 -157.60 -111.24 REMARK 500 ASN A 159 -8.28 84.18 REMARK 500 ARG A 196 109.68 -11.18 REMARK 500 ALA B 142 74.78 -160.90 REMARK 500 SER B 149 -156.21 -110.81 REMARK 500 ASN B 159 -9.01 83.52 REMARK 500 ARG B 196 47.20 -63.17 REMARK 500 GLN B 241 -92.77 -116.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG A 232 LYS A 233 149.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-13837C RELATED DB: TARGETDB DBREF 3F5S A 4 247 UNP Q83RM3 Q83RM3_SHIFL 6 249 DBREF 3F5S B 4 247 UNP Q83RM3 Q83RM3_SHIFL 6 249 SEQADV 3F5S MET A 1 UNP Q83RM3 EXPRESSION TAG SEQADV 3F5S SER A 2 UNP Q83RM3 EXPRESSION TAG SEQADV 3F5S LEU A 3 UNP Q83RM3 EXPRESSION TAG SEQADV 3F5S GLU A 248 UNP Q83RM3 EXPRESSION TAG SEQADV 3F5S GLY A 249 UNP Q83RM3 EXPRESSION TAG SEQADV 3F5S HIS A 250 UNP Q83RM3 EXPRESSION TAG SEQADV 3F5S HIS A 251 UNP Q83RM3 EXPRESSION TAG SEQADV 3F5S HIS A 252 UNP Q83RM3 EXPRESSION TAG SEQADV 3F5S HIS A 253 UNP Q83RM3 EXPRESSION TAG SEQADV 3F5S HIS A 254 UNP Q83RM3 EXPRESSION TAG SEQADV 3F5S HIS A 255 UNP Q83RM3 EXPRESSION TAG SEQADV 3F5S MET B 1 UNP Q83RM3 EXPRESSION TAG SEQADV 3F5S SER B 2 UNP Q83RM3 EXPRESSION TAG SEQADV 3F5S LEU B 3 UNP Q83RM3 EXPRESSION TAG SEQADV 3F5S GLU B 248 UNP Q83RM3 EXPRESSION TAG SEQADV 3F5S GLY B 249 UNP Q83RM3 EXPRESSION TAG SEQADV 3F5S HIS B 250 UNP Q83RM3 EXPRESSION TAG SEQADV 3F5S HIS B 251 UNP Q83RM3 EXPRESSION TAG SEQADV 3F5S HIS B 252 UNP Q83RM3 EXPRESSION TAG SEQADV 3F5S HIS B 253 UNP Q83RM3 EXPRESSION TAG SEQADV 3F5S HIS B 254 UNP Q83RM3 EXPRESSION TAG SEQADV 3F5S HIS B 255 UNP Q83RM3 EXPRESSION TAG SEQRES 1 A 255 MET SER LEU LYS GLN ASP LEU LEU ASN ASP ARG ILE ILE SEQRES 2 A 255 LEU VAL THR GLY ALA SER ASP GLY ILE GLY ARG GLU ALA SEQRES 3 A 255 ALA MET THR TYR ALA ARG TYR GLY ALA THR VAL ILE LEU SEQRES 4 A 255 LEU GLY ARG ASN GLU GLU LYS LEU ARG GLN VAL ALA SER SEQRES 5 A 255 HIS ILE ASN GLU GLU THR GLY ARG GLN PRO GLN TRP PHE SEQRES 6 A 255 ILE LEU ASP LEU LEU THR CYS THR SER GLU ASN CYS GLN SEQRES 7 A 255 GLN LEU ALA GLN ARG ILE VAL VAL ASN TYR PRO ARG LEU SEQRES 8 A 255 ASP GLY VAL LEU HIS ASN ALA GLY LEU LEU GLY ASP VAL SEQRES 9 A 255 CYS PRO MET SER GLU GLN ASN PRO GLN VAL TRP GLN ASP SEQRES 10 A 255 VAL MET GLN ILE ASN VAL ASN ALA THR PHE MET LEU THR SEQRES 11 A 255 GLN ALA LEU LEU PRO LEU LEU LEU LYS SER ASP ALA GLY SEQRES 12 A 255 SER LEU VAL PHE THR SER SER SER VAL GLY ARG GLN GLY SEQRES 13 A 255 ARG ALA ASN TRP GLY ALA TYR ALA ALA SER LYS PHE ALA SEQRES 14 A 255 THR GLU GLY MET MET GLN VAL LEU ALA ASP GLU TYR GLN SEQRES 15 A 255 GLN ARG LEU ARG VAL ASN CYS ILE ASN PRO GLY GLY THR SEQRES 16 A 255 ARG THR ALA MET ARG ALA SER ALA PHE PRO THR GLU ASP SEQRES 17 A 255 PRO GLN LYS LEU LYS THR PRO ALA ASP ILE MET PRO LEU SEQRES 18 A 255 TYR LEU TRP LEU MET GLY ASP ASP SER ARG ARG LYS THR SEQRES 19 A 255 GLY MET THR PHE ASP ALA GLN PRO GLY ARG LYS PRO GLY SEQRES 20 A 255 GLU GLY HIS HIS HIS HIS HIS HIS SEQRES 1 B 255 MET SER LEU LYS GLN ASP LEU LEU ASN ASP ARG ILE ILE SEQRES 2 B 255 LEU VAL THR GLY ALA SER ASP GLY ILE GLY ARG GLU ALA SEQRES 3 B 255 ALA MET THR TYR ALA ARG TYR GLY ALA THR VAL ILE LEU SEQRES 4 B 255 LEU GLY ARG ASN GLU GLU LYS LEU ARG GLN VAL ALA SER SEQRES 5 B 255 HIS ILE ASN GLU GLU THR GLY ARG GLN PRO GLN TRP PHE SEQRES 6 B 255 ILE LEU ASP LEU LEU THR CYS THR SER GLU ASN CYS GLN SEQRES 7 B 255 GLN LEU ALA GLN ARG ILE VAL VAL ASN TYR PRO ARG LEU SEQRES 8 B 255 ASP GLY VAL LEU HIS ASN ALA GLY LEU LEU GLY ASP VAL SEQRES 9 B 255 CYS PRO MET SER GLU GLN ASN PRO GLN VAL TRP GLN ASP SEQRES 10 B 255 VAL MET GLN ILE ASN VAL ASN ALA THR PHE MET LEU THR SEQRES 11 B 255 GLN ALA LEU LEU PRO LEU LEU LEU LYS SER ASP ALA GLY SEQRES 12 B 255 SER LEU VAL PHE THR SER SER SER VAL GLY ARG GLN GLY SEQRES 13 B 255 ARG ALA ASN TRP GLY ALA TYR ALA ALA SER LYS PHE ALA SEQRES 14 B 255 THR GLU GLY MET MET GLN VAL LEU ALA ASP GLU TYR GLN SEQRES 15 B 255 GLN ARG LEU ARG VAL ASN CYS ILE ASN PRO GLY GLY THR SEQRES 16 B 255 ARG THR ALA MET ARG ALA SER ALA PHE PRO THR GLU ASP SEQRES 17 B 255 PRO GLN LYS LEU LYS THR PRO ALA ASP ILE MET PRO LEU SEQRES 18 B 255 TYR LEU TRP LEU MET GLY ASP ASP SER ARG ARG LYS THR SEQRES 19 B 255 GLY MET THR PHE ASP ALA GLN PRO GLY ARG LYS PRO GLY SEQRES 20 B 255 GLU GLY HIS HIS HIS HIS HIS HIS FORMUL 3 HOH *251(H2 O) HELIX 1 1 ASP A 20 TYR A 33 1 14 HELIX 2 2 ASN A 43 GLY A 59 1 17 HELIX 3 3 THR A 73 TYR A 88 1 16 HELIX 4 4 ASN A 111 VAL A 123 1 13 HELIX 5 5 VAL A 123 LYS A 139 1 17 HELIX 6 6 SER A 150 ARG A 154 5 5 HELIX 7 7 TRP A 160 TYR A 181 1 22 HELIX 8 8 THR A 214 ASP A 217 5 4 HELIX 9 9 ILE A 218 GLY A 227 1 10 HELIX 10 10 ASP A 228 ARG A 231 5 4 HELIX 11 11 ASP B 20 TYR B 33 1 14 HELIX 12 12 ASN B 43 GLY B 59 1 17 HELIX 13 13 THR B 73 TYR B 88 1 16 HELIX 14 14 ASN B 111 VAL B 123 1 13 HELIX 15 15 VAL B 123 LYS B 139 1 17 HELIX 16 16 SER B 150 ARG B 154 5 5 HELIX 17 17 TRP B 160 TYR B 181 1 22 HELIX 18 18 THR B 214 ASP B 217 5 4 HELIX 19 19 ILE B 218 GLY B 227 1 10 HELIX 20 20 ASP B 228 ARG B 231 5 4 SHEET 1 A 7 GLN A 63 ILE A 66 0 SHEET 2 A 7 THR A 36 GLY A 41 1 N LEU A 39 O GLN A 63 SHEET 3 A 7 ILE A 12 VAL A 15 1 N VAL A 15 O ILE A 38 SHEET 4 A 7 GLY A 93 LEU A 95 1 O LEU A 95 N LEU A 14 SHEET 5 A 7 SER A 144 THR A 148 1 O VAL A 146 N VAL A 94 SHEET 6 A 7 ARG A 186 ASN A 191 1 O ARG A 186 N LEU A 145 SHEET 7 A 7 THR A 237 ASP A 239 1 O PHE A 238 N ASN A 191 SHEET 1 B 7 GLN B 63 ILE B 66 0 SHEET 2 B 7 THR B 36 GLY B 41 1 N LEU B 39 O GLN B 63 SHEET 3 B 7 ILE B 12 VAL B 15 1 N VAL B 15 O ILE B 38 SHEET 4 B 7 GLY B 93 HIS B 96 1 O LEU B 95 N LEU B 14 SHEET 5 B 7 GLY B 143 THR B 148 1 O VAL B 146 N HIS B 96 SHEET 6 B 7 LEU B 185 ASN B 191 1 O ARG B 186 N LEU B 145 SHEET 7 B 7 THR B 237 ASP B 239 1 O PHE B 238 N ASN B 191 CISPEP 1 ALA A 240 GLN A 241 0 -1.87 CRYST1 53.993 67.414 65.031 90.00 108.69 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018521 0.000000 0.006266 0.00000 SCALE2 0.000000 0.014834 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016234 0.00000