HEADER HYDROLASE 07-NOV-08 3F75 TITLE ACTIVATED TOXOPLASMA GONDII CATHEPSIN L (TGCPL) IN COMPLEX WITH ITS TITLE 2 PROPEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CATHEPSIN L PROTEASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 199-422; COMPND 5 SYNONYM: TOXOPAIN-2; COMPND 6 EC: 3.4.22.15; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: CATHEPSIN L PROPEPTIDE; COMPND 10 CHAIN: P; COMPND 11 FRAGMENT: UNP RESIDUES 105-198; COMPND 12 SYNONYM: TOXOPAIN-2; COMPND 13 EC: 3.4.22.15; COMPND 14 ENGINEERED: YES; COMPND 15 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TOXOPLASMA GONDII; SOURCE 3 ORGANISM_TAXID: 383379; SOURCE 4 STRAIN: RH; SOURCE 5 GENE: CPL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: M15[PREP4]; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PQE30; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: TOXOPLASMA GONDII; SOURCE 13 ORGANISM_TAXID: 383379; SOURCE 14 STRAIN: RH; SOURCE 15 GENE: CPL; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: M15[PREP4]; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PQE30 KEYWDS MEDICAL STRUCTURAL GENOMICS OF PATHOGENIC PROTOZOA, MSGPP, CYSTEINE KEYWDS 2 PROTEASE, PARASITE, PROTOZOA, HYDROLASE, THIOL PROTEASE EXPDTA X-RAY DIFFRACTION AUTHOR E.T.LARSON,E.A.MERRITT,MEDICAL STRUCTURAL GENOMICS OF PATHOGENIC AUTHOR 2 PROTOZOA (MSGPP) REVDAT 9 06-SEP-23 3F75 1 REMARK SEQADV REVDAT 8 25-OCT-17 3F75 1 REMARK REVDAT 7 31-JUL-13 3F75 1 HET HETATM SITE REVDAT 6 13-JUL-11 3F75 1 VERSN REVDAT 5 29-SEP-09 3F75 1 JRNL REVDAT 4 09-JUN-09 3F75 1 ATOM REVDAT REVDAT 3 24-FEB-09 3F75 1 VERSN REVDAT 2 23-DEC-08 3F75 1 AUTHOR KEYWDS REVDAT 1 25-NOV-08 3F75 0 JRNL AUTH E.T.LARSON,F.PARUSSINI,M.H.HUYNH,J.D.GIEBEL,A.M.KELLEY, JRNL AUTH 2 L.ZHANG,M.BOGYO,E.A.MERRITT,V.B.CARRUTHERS JRNL TITL TOXOPLASMA GONDII CATHEPSIN L IS THE PRIMARY TARGET OF THE JRNL TITL 2 INVASION-INHIBITORY COMPOUND JRNL TITL 3 MORPHOLINUREA-LEUCYL-HOMOPHENYL-VINYL SULFONE PHENYL. JRNL REF J.BIOL.CHEM. V. 284 26839 2009 JRNL REFN ISSN 0021-9258 JRNL PMID 19596863 JRNL DOI 10.1074/JBC.M109.003780 REMARK 2 REMARK 2 RESOLUTION. 1.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REFMAC_5.5.0047 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.98 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 23178 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1186 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.99 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.04 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1563 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.52 REMARK 3 BIN R VALUE (WORKING SET) : 0.2200 REMARK 3 BIN FREE R VALUE SET COUNT : 88 REMARK 3 BIN FREE R VALUE : 0.3140 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2345 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 7 REMARK 3 SOLVENT ATOMS : 165 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 25.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.72000 REMARK 3 B22 (A**2) : 0.72000 REMARK 3 B33 (A**2) : -1.43000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.156 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.142 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.093 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.380 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2433 ; 0.010 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1697 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3272 ; 1.156 ; 1.939 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4094 ; 1.187 ; 3.004 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 298 ; 5.542 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 122 ;31.752 ;24.016 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 420 ;12.772 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;14.757 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 325 ; 0.070 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2754 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 527 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1478 ; 1.695 ; 4.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 615 ; 0.541 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2347 ; 2.581 ; 6.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 955 ; 3.299 ; 6.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 925 ; 4.958 ;10.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 15 REMARK 3 ORIGIN FOR THE GROUP (A): 30.8510 10.3890 60.6530 REMARK 3 T TENSOR REMARK 3 T11: 0.2619 T22: 0.1317 REMARK 3 T33: 0.0917 T12: 0.0389 REMARK 3 T13: -0.0138 T23: -0.0212 REMARK 3 L TENSOR REMARK 3 L11: 5.0140 L22: 0.6999 REMARK 3 L33: 5.0691 L12: 1.5976 REMARK 3 L13: 1.3542 L23: 0.2208 REMARK 3 S TENSOR REMARK 3 S11: -0.0945 S12: -0.5017 S13: 0.5622 REMARK 3 S21: 0.1900 S22: -0.1610 S23: 0.1737 REMARK 3 S31: -0.4786 S32: -0.1512 S33: 0.2555 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 16 A 118 REMARK 3 ORIGIN FOR THE GROUP (A): 15.7340 14.4340 39.8280 REMARK 3 T TENSOR REMARK 3 T11: 0.0215 T22: 0.1622 REMARK 3 T33: 0.1181 T12: 0.0542 REMARK 3 T13: 0.0001 T23: 0.0132 REMARK 3 L TENSOR REMARK 3 L11: 1.0526 L22: 1.3822 REMARK 3 L33: 1.5453 L12: 0.1041 REMARK 3 L13: -0.1336 L23: -0.0157 REMARK 3 S TENSOR REMARK 3 S11: 0.0324 S12: 0.0246 S13: 0.0664 REMARK 3 S21: -0.0076 S22: 0.0210 S23: 0.3040 REMARK 3 S31: -0.0730 S32: -0.3475 S33: -0.0535 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 119 A 135 REMARK 3 ORIGIN FOR THE GROUP (A): 30.0890 21.0780 55.6700 REMARK 3 T TENSOR REMARK 3 T11: 0.1488 T22: 0.1369 REMARK 3 T33: 0.0994 T12: 0.0360 REMARK 3 T13: 0.0309 T23: -0.0342 REMARK 3 L TENSOR REMARK 3 L11: 6.5920 L22: 2.7529 REMARK 3 L33: 3.1360 L12: -1.8504 REMARK 3 L13: -0.1470 L23: 1.4173 REMARK 3 S TENSOR REMARK 3 S11: 0.1644 S12: -0.1850 S13: 0.6250 REMARK 3 S21: 0.1134 S22: -0.1725 S23: 0.0124 REMARK 3 S31: -0.2436 S32: -0.0731 S33: 0.0080 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 136 A 224 REMARK 3 ORIGIN FOR THE GROUP (A): 35.9990 13.1230 44.8920 REMARK 3 T TENSOR REMARK 3 T11: 0.0752 T22: 0.1090 REMARK 3 T33: 0.0878 T12: 0.0254 REMARK 3 T13: -0.0028 T23: -0.0032 REMARK 3 L TENSOR REMARK 3 L11: 0.7221 L22: 1.1040 REMARK 3 L33: 1.2710 L12: 0.1182 REMARK 3 L13: -0.2210 L23: 0.0126 REMARK 3 S TENSOR REMARK 3 S11: -0.0062 S12: -0.0874 S13: -0.0004 REMARK 3 S21: 0.0968 S22: -0.0102 S23: -0.0264 REMARK 3 S31: -0.0417 S32: 0.0269 S33: 0.0164 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : P 108 P 123 REMARK 3 ORIGIN FOR THE GROUP (A): 44.4360 -1.0330 19.4300 REMARK 3 T TENSOR REMARK 3 T11: 0.1534 T22: 0.1255 REMARK 3 T33: 0.1220 T12: 0.0367 REMARK 3 T13: -0.0173 T23: -0.0123 REMARK 3 L TENSOR REMARK 3 L11: 11.2110 L22: 6.1258 REMARK 3 L33: 5.1838 L12: 1.3313 REMARK 3 L13: -3.3102 L23: -0.3505 REMARK 3 S TENSOR REMARK 3 S11: -0.0013 S12: -0.2859 S13: -0.1586 REMARK 3 S21: -0.0530 S22: 0.0052 S23: -0.8492 REMARK 3 S31: 0.1250 S32: 0.7099 S33: -0.0039 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : P 124 P 136 REMARK 3 ORIGIN FOR THE GROUP (A): 35.2120 6.9950 14.2700 REMARK 3 T TENSOR REMARK 3 T11: 0.0967 T22: 0.1008 REMARK 3 T33: 0.0531 T12: -0.0088 REMARK 3 T13: -0.0246 T23: -0.0024 REMARK 3 L TENSOR REMARK 3 L11: 2.3824 L22: 0.9804 REMARK 3 L33: 5.2934 L12: -0.6944 REMARK 3 L13: 0.2352 L23: -0.6445 REMARK 3 S TENSOR REMARK 3 S11: 0.0401 S12: 0.1907 S13: 0.0296 REMARK 3 S21: 0.0164 S22: -0.0876 S23: -0.1766 REMARK 3 S31: -0.1339 S32: 0.3121 S33: 0.0475 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : P 137 P 168 REMARK 3 ORIGIN FOR THE GROUP (A): 44.9520 6.7830 29.2120 REMARK 3 T TENSOR REMARK 3 T11: 0.0863 T22: 0.1150 REMARK 3 T33: 0.0705 T12: 0.0107 REMARK 3 T13: 0.0009 T23: -0.0054 REMARK 3 L TENSOR REMARK 3 L11: 1.1910 L22: 0.8015 REMARK 3 L33: 4.0785 L12: -0.1618 REMARK 3 L13: 1.2336 L23: -0.4649 REMARK 3 S TENSOR REMARK 3 S11: -0.0408 S12: 0.0644 S13: -0.0524 REMARK 3 S21: -0.0393 S22: 0.0181 S23: -0.1015 REMARK 3 S31: 0.0135 S32: 0.2810 S33: 0.0227 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : P 169 P 182 REMARK 3 ORIGIN FOR THE GROUP (A): 32.3780 19.5600 29.2430 REMARK 3 T TENSOR REMARK 3 T11: 0.0727 T22: 0.1246 REMARK 3 T33: 0.0808 T12: 0.0325 REMARK 3 T13: -0.0386 T23: 0.0189 REMARK 3 L TENSOR REMARK 3 L11: 4.8934 L22: 3.8176 REMARK 3 L33: 3.8077 L12: -1.0971 REMARK 3 L13: -3.0507 L23: 0.8732 REMARK 3 S TENSOR REMARK 3 S11: -0.0195 S12: 0.0190 S13: 0.2090 REMARK 3 S21: -0.1573 S22: 0.1067 S23: 0.2228 REMARK 3 S31: -0.3245 S32: -0.2929 S33: -0.0872 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES: RESIDUAL ONLY REMARK 4 REMARK 4 3F75 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-NOV-08. REMARK 100 THE DEPOSITION ID IS D_1000050230. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-MAR-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9800 REMARK 200 MONOCHROMATOR : SI(111) CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23266 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.990 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 8.700 REMARK 200 R MERGE (I) : 0.12200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.1280 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 8.50 REMARK 200 R MERGE FOR SHELL (I) : 0.74400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1CS8 (PROTEASE DOMAIN ONLY) REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40% PEG 8000, 0.1M AMMONIUM BROMIDE, REMARK 280 0.1M SODIUM CITRATE PH 4.0. CRYOPROTECTED WITH ~10% ETHYLENE REMARK 280 GLYCOL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.88600 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 32.81050 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 32.81050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 112.32900 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 32.81050 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 32.81050 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 37.44300 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 32.81050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 32.81050 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 112.32900 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 32.81050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 32.81050 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 37.44300 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 74.88600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 481 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 1 REMARK 465 MET P 93 REMARK 465 ARG P 94 REMARK 465 GLY P 95 REMARK 465 SER P 96 REMARK 465 HIS P 97 REMARK 465 HIS P 98 REMARK 465 HIS P 99 REMARK 465 HIS P 100 REMARK 465 HIS P 101 REMARK 465 HIS P 102 REMARK 465 GLY P 103 REMARK 465 SER P 104 REMARK 465 ILE P 105 REMARK 465 TRP P 106 REMARK 465 GLU P 107 REMARK 465 SER P 183 REMARK 465 ARG P 184 REMARK 465 ASN P 185 REMARK 465 LEU P 186 REMARK 465 LYS P 187 REMARK 465 SER P 188 REMARK 465 HIS P 189 REMARK 465 HIS P 190 REMARK 465 LEU P 191 REMARK 465 GLY P 192 REMARK 465 VAL P 193 REMARK 465 ALA P 194 REMARK 465 THR P 195 REMARK 465 GLU P 196 REMARK 465 LEU P 197 REMARK 465 LEU P 198 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 26 -154.12 59.91 REMARK 500 ARG A 26 -147.77 59.91 REMARK 500 SER A 70 -126.59 53.11 REMARK 500 HIS A 153 -66.43 -109.02 REMARK 500 HIS A 206 73.81 -105.82 REMARK 500 ASP A 218 54.50 -152.27 REMARK 500 LEU P 178 -109.67 -116.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR P 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO P 202 REMARK 999 REMARK 999 SEQUENCE REMARK 999 1. THE TARGETDB ID FOR THIS PROTEIN REMARK 999 WAS NOT AVAILABLE AT THE TIME OF DEPOSITION. REMARK 999 2. THIS ENTRY IS A COMPLEX OF THE ACTIVE PROTEASE REMARK 999 AND ITS PROPEPTIDE, LABELED AS CHAIN A AND CHAIN P, REMARK 999 RESPECTIVELY, TO INDICATE THAT THEY ARE DISTINCT REMARK 999 POLYPEPTIDE CHAINS. REMARK 999 3. ENTITY 1 (CHAIN A): EXPRESSED TOGETHER WITH CHAIN P REMARK 999 AS PROCATHEPSIN L AND AUTOACTIVATED, BUT PROPEPTIDE NOT REMARK 999 PURIFIED FROM ACTIVE PROTEASE PRIOR TO CRYSTALLIZATION. REMARK 999 4. ENTITY 2 (CHAIN P): N-TERMINAL HIS TAG REPLACED ALL REMARK 999 BUT THE LAST 94 RESIDUES OF THE PROPEPTIDE DOMAIN. REMARK 999 EXPRESSED TOGETHER WITH CHAIN A AS PROCATHEPSIN L AND REMARK 999 AUTOACTIVATED, BUT PROPEPTIDE NOT PURIFIED FROM ACTIVE REMARK 999 PROTEASE PRIOR TO CRYSTALLIZATION. DBREF 3F75 A 1 224 UNP Q6DMN0 Q6DMN0_TOXGO 199 422 DBREF 3F75 P 105 198 UNP Q6DMN0 Q6DMN0_TOXGO 105 198 SEQADV 3F75 MET P 93 UNP Q6DMN0 EXPRESSION TAG SEQADV 3F75 ARG P 94 UNP Q6DMN0 EXPRESSION TAG SEQADV 3F75 GLY P 95 UNP Q6DMN0 EXPRESSION TAG SEQADV 3F75 SER P 96 UNP Q6DMN0 EXPRESSION TAG SEQADV 3F75 HIS P 97 UNP Q6DMN0 EXPRESSION TAG SEQADV 3F75 HIS P 98 UNP Q6DMN0 EXPRESSION TAG SEQADV 3F75 HIS P 99 UNP Q6DMN0 EXPRESSION TAG SEQADV 3F75 HIS P 100 UNP Q6DMN0 EXPRESSION TAG SEQADV 3F75 HIS P 101 UNP Q6DMN0 EXPRESSION TAG SEQADV 3F75 HIS P 102 UNP Q6DMN0 EXPRESSION TAG SEQADV 3F75 GLY P 103 UNP Q6DMN0 EXPRESSION TAG SEQADV 3F75 SER P 104 UNP Q6DMN0 EXPRESSION TAG SEQRES 1 A 224 ASN VAL LEU PRO SER GLU LEU PRO ALA GLY VAL ASP TRP SEQRES 2 A 224 ARG SER ARG GLY CYS VAL THR PRO VAL LYS ASP GLN ARG SEQRES 3 A 224 ASP CYS GLY SER CYS TRP ALA PHE SER THR THR GLY ALA SEQRES 4 A 224 LEU GLU GLY ALA HIS CYS ALA LYS THR GLY LYS LEU VAL SEQRES 5 A 224 SER LEU SER GLU GLN GLU LEU MET ASP CYS SER ARG ALA SEQRES 6 A 224 GLU GLY ASN GLN SER CYS SER GLY GLY GLU MET ASN ASP SEQRES 7 A 224 ALA PHE GLN TYR VAL LEU ASP SER GLY GLY ILE CYS SER SEQRES 8 A 224 GLU ASP ALA TYR PRO TYR LEU ALA ARG ASP GLU GLU CYS SEQRES 9 A 224 ARG ALA GLN SER CYS GLU LYS VAL VAL LYS ILE LEU GLY SEQRES 10 A 224 PHE LYS ASP VAL PRO ARG ARG SER GLU ALA ALA MET LYS SEQRES 11 A 224 ALA ALA LEU ALA LYS SER PRO VAL SER ILE ALA ILE GLU SEQRES 12 A 224 ALA ASP GLN MET PRO PHE GLN PHE TYR HIS GLU GLY VAL SEQRES 13 A 224 PHE ASP ALA SER CYS GLY THR ASP LEU ASP HIS GLY VAL SEQRES 14 A 224 LEU LEU VAL GLY TYR GLY THR ASP LYS GLU SER LYS LYS SEQRES 15 A 224 ASP PHE TRP ILE MET LYS ASN SER TRP GLY THR GLY TRP SEQRES 16 A 224 GLY ARG ASP GLY TYR MET TYR MET ALA MET HIS LYS GLY SEQRES 17 A 224 GLU GLU GLY GLN CYS GLY LEU LEU LEU ASP ALA SER PHE SEQRES 18 A 224 PRO VAL MET SEQRES 1 P 106 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER ILE SEQRES 2 P 106 TRP GLU TRP LYS GLU ALA HIS PHE GLN ASP ALA PHE SER SEQRES 3 P 106 SER PHE GLN ALA MET TYR ALA LYS SER TYR ALA THR GLU SEQRES 4 P 106 GLU GLU LYS GLN ARG ARG TYR ALA ILE PHE LYS ASN ASN SEQRES 5 P 106 LEU VAL TYR ILE HIS THR HIS ASN GLN GLN GLY TYR SER SEQRES 6 P 106 TYR SER LEU LYS MET ASN HIS PHE GLY ASP LEU SER ARG SEQRES 7 P 106 ASP GLU PHE ARG ARG LYS TYR LEU GLY PHE LYS LYS SER SEQRES 8 P 106 ARG ASN LEU LYS SER HIS HIS LEU GLY VAL ALA THR GLU SEQRES 9 P 106 LEU LEU HET CL A 301 1 HET CL A 302 1 HET BR P 201 1 HET EDO P 202 4 HETNAM CL CHLORIDE ION HETNAM BR BROMIDE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 CL 2(CL 1-) FORMUL 5 BR BR 1- FORMUL 6 EDO C2 H6 O2 FORMUL 7 HOH *165(H2 O) HELIX 1 1 LEU A 3 LEU A 7 5 5 HELIX 2 2 TRP A 13 GLY A 17 1 5 HELIX 3 3 SER A 30 GLY A 49 1 20 HELIX 4 4 SER A 55 SER A 63 1 9 HELIX 5 5 ARG A 64 GLY A 67 5 4 HELIX 6 6 GLN A 69 GLY A 73 5 5 HELIX 7 7 GLU A 75 GLY A 87 1 13 HELIX 8 8 ARG A 105 CYS A 109 5 5 HELIX 9 9 SER A 125 SER A 136 1 12 HELIX 10 10 GLN A 146 PHE A 151 1 6 HELIX 11 11 GLY A 211 LEU A 215 5 5 HELIX 12 12 LYS P 109 ALA P 125 1 17 HELIX 13 13 THR P 130 GLN P 153 1 24 HELIX 14 14 SER P 169 TYR P 177 1 9 SHEET 1 A 3 VAL A 11 ASP A 12 0 SHEET 2 A 3 HIS A 167 ASP A 177 -1 O TYR A 174 N VAL A 11 SHEET 3 A 3 VAL A 138 ILE A 142 -1 N VAL A 138 O LEU A 171 SHEET 1 B 6 VAL A 11 ASP A 12 0 SHEET 2 B 6 HIS A 167 ASP A 177 -1 O TYR A 174 N VAL A 11 SHEET 3 B 6 LYS A 182 LYS A 188 -1 O LYS A 188 N LEU A 170 SHEET 4 B 6 TYR A 200 ALA A 204 -1 O MET A 201 N MET A 187 SHEET 5 B 6 TYR A 152 PHE A 157 1 N PHE A 157 O TYR A 202 SHEET 6 B 6 TYR P 158 LEU P 160 -1 O SER P 159 N HIS A 153 SHEET 1 C 2 GLY A 117 ASP A 120 0 SHEET 2 C 2 SER A 220 VAL A 223 -1 O VAL A 223 N GLY A 117 SSBOND 1 CYS A 18 CYS A 45 1555 1555 2.96 SSBOND 2 CYS A 28 CYS A 71 1555 1555 2.05 SSBOND 3 CYS A 62 CYS A 104 1555 1555 2.07 SSBOND 4 CYS A 90 CYS A 109 1555 1555 2.05 SSBOND 5 CYS A 161 CYS A 213 1555 1555 2.04 SITE 1 AC1 3 MET A 147 SER A 160 ARG P 170 SITE 1 AC2 3 ARG A 197 GLN P 121 TYR P 128 SITE 1 AC3 3 ARG A 197 GLN P 121 TYR P 128 SITE 1 AC4 5 THR A 176 HOH A 517 LYS P 126 ASP P 167 SITE 2 AC4 5 HOH P 312 CRYST1 65.621 65.621 149.772 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015239 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015239 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006677 0.00000