HEADER OXIDOREDUCTASE 09-NOV-08 3F7K TITLE X-RAY CRYSTAL STRUCTURE OF AN ALVINELLA POMPEJANA CU,ZN SUPEROXIDE TITLE 2 DISMUTASE- HYDROGEN PEROXIDE COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: COPPER,ZINC SUPEROXIDE DISMUTASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.15.1.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ALVINELLA POMPEJANA; SOURCE 3 ORGANISM_TAXID: 6376; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS OXIDOREDUCTASE (SUPEROXIDE ACCEPTOR), SUPEROXIDE DISMUTASE, GREEK KEY KEYWDS 2 BETA-BARREL, AMYLOID FILAMENTS, ALS, FALS, LOU GEHRIG'S DISEASE, KEYWDS 3 AMYOTROPHIC LATERAL SCLEROSIS, ALVINELLA POMPEJANA, POMPEII WORM, KEYWDS 4 EUKARYOTIC THERMOPHILE, THERMOSTABLE PROTEIN, HYDROGEN PEROXIDE KEYWDS 5 PRODUCT COMPLEX, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR D.S.SHIN,M.DIDONATO,D.P.BARONDEAU,E.D.GETZOFF,J.A.TAINER REVDAT 2 27-DEC-23 3F7K 1 REMARK REVDAT 1 10-FEB-09 3F7K 0 JRNL AUTH D.S.SHIN,M.DIDONATO,D.P.BARONDEAU,G.L.HURA,C.HITOMI, JRNL AUTH 2 J.A.BERGLUND,E.D.GETZOFF,S.C.CARY,J.A.TAINER JRNL TITL SUPEROXIDE DISMUTASE FROM THE EUKARYOTIC THERMOPHILE JRNL TITL 2 ALVINELLA POMPEJANA: STRUCTURES, STABILITY, MECHANISM, AND JRNL TITL 3 INSIGHTS INTO AMYOTROPHIC LATERAL SCLEROSIS. JRNL REF J.MOL.BIOL. V. 385 1534 2009 JRNL REFN ISSN 0022-2836 JRNL PMID 19063897 JRNL DOI 10.1016/J.JMB.2008.11.031 REMARK 2 REMARK 2 RESOLUTION. 1.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SHELXL-97 REMARK 3 AUTHORS : G.M.SHELDRICK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.147 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.128 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.176 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : 5.011 REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 1994 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 39789 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : 0.137 REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : 0.119 REMARK 3 FREE R VALUE (F>4SIG(F)) : 0.164 REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : 4.996 REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : 1665 REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : 33326 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1091 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 26 REMARK 3 SOLVENT ATOMS : 295 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : 1399.3 REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : 1057.7 REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : 8 REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : 13139 REMARK 3 NUMBER OF RESTRAINTS : 15754 REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : 0.014 REMARK 3 ANGLE DISTANCES (A) : NULL REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : 0.000 REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : 0.032 REMARK 3 ZERO CHIRAL VOLUMES (A**3) : 0.065 REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : 0.067 REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : 0.054 REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : 0.004 REMARK 3 SIMILAR ADP COMPONENTS (A**2) : 0.045 REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : 0.091 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: NULL REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : ENGH & HUBER REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3F7K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-NOV-08. REMARK 100 THE DEPOSITION ID IS D_1000050245. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-OCT-04 REMARK 200 TEMPERATURE (KELVIN) : 90 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 12.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.100 REMARK 200 MONOCHROMATOR : SIBYLS KOHZU DUAL DOUBLE SI(111) REMARK 200 CRYSTAL MONOCHROMATOR (DDCM) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XFIT, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39844 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.350 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.6 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05500 REMARK 200 FOR THE DATA SET : 22.6200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 58.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.32000 REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: XFIT REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 55% SATURATED AMMONIUM SULFATE, 100 MM REMARK 280 NA CITRATE FOLLOWED BY TRANSFER TO 90% SATURATED AMMONIUM REMARK 280 SULFATE, 100 MM NA CITRATE (PH 5.5) AND 1 MM HYDROGEN PEROXIDE, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.58167 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 109.16333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 81.87250 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 136.45417 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 27.29083 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 54.58167 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 109.16333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 136.45417 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 81.87250 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 27.29083 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE SECOND SUBUNIT OF THE DIMER IS GENERATED BY THE REMARK 300 OPERATORS Y-X,Y,1/2-Z REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -144.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 62.56300 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 81.87250 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 S SO4 A 206 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 483 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 152 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 90 NA NA A 204 1.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 77 NE - CZ - NH1 ANGL. DEV. = -4.0 DEGREES REMARK 500 MET A 97 CG - SD - CE ANGL. DEV. = 13.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 63 59.22 -142.23 REMARK 500 ASN A 96 88.92 -158.68 REMARK 500 ASN A 96 88.92 -157.05 REMARK 500 ARG A 113 -165.06 -102.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU1 A 201 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 44 ND1 REMARK 620 2 HIS A 46 NE2 137.4 REMARK 620 3 HIS A 118 NE2 102.5 119.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 203 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 61 ND1 REMARK 620 2 HIS A 69 ND1 105.1 REMARK 620 3 HIS A 78 ND1 110.6 121.0 REMARK 620 4 ASP A 81 OD1 105.9 100.8 112.1 REMARK 620 N 1 2 3 REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR REMARK 700 REMARK 700 SHEET REMARK 700 DETERMIANTION METHOD: AUTHOR REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU1 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEO A 209 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3F7L RELATED DB: PDB REMARK 900 X-RAY CRYSTAL STRUCTURE OF ALVINELLA POMPEJANA CU,ZN SUPEROXIDE REMARK 900 DISMUTASE DBREF 3F7K A 1 152 PDB 3F7K 3F7K 1 152 SEQRES 1 A 152 ALA ILE HIS ALA VAL CYS VAL LEU LYS GLY ASP SER PRO SEQRES 2 A 152 VAL THR GLY THR ILE HIS LEU LYS GLU GLU GLY ASP MET SEQRES 3 A 152 VAL THR VAL THR GLY GLU ILE THR GLY LEU THR PRO GLY SEQRES 4 A 152 LYS HIS GLY PHE HIS VAL HIS GLU PHE GLY ASP ASN THR SEQRES 5 A 152 ASN GLY CYS THR SER ALA GLY GLY HIS PHE ASN PRO HIS SEQRES 6 A 152 GLY LYS GLU HIS GLY ALA PRO GLU ASP GLU ASN ARG HIS SEQRES 7 A 152 ALA GLY ASP LEU GLY ASN VAL VAL ALA GLY GLU ASP GLY SEQRES 8 A 152 LYS ALA VAL ILE ASN MET LYS ASP LYS LEU VAL LYS LEU SEQRES 9 A 152 THR GLY PRO ASP SER VAL ILE GLY ARG THR LEU VAL VAL SEQRES 10 A 152 HIS VAL ASP GLU ASP ASP LEU GLY ARG GLY GLY HIS GLU SEQRES 11 A 152 GLN SER LYS ILE THR GLY ASN ALA GLY GLY ARG LEU ALA SEQRES 12 A 152 CYS GLY VAL ILE GLY ILE THR LYS GLU HET CU1 A 201 1 HET CU A 202 1 HET ZN A 203 1 HET NA A 204 1 HET SO4 A 205 5 HET SO4 A 206 5 HET SO4 A 207 5 HET SO4 A 208 5 HET PEO A 209 2 HETNAM CU1 COPPER (I) ION HETNAM CU COPPER (II) ION HETNAM ZN ZINC ION HETNAM NA SODIUM ION HETNAM SO4 SULFATE ION HETNAM PEO HYDROGEN PEROXIDE FORMUL 2 CU1 CU 1+ FORMUL 3 CU CU 2+ FORMUL 4 ZN ZN 2+ FORMUL 5 NA NA 1+ FORMUL 6 SO4 4(O4 S 2-) FORMUL 10 PEO H2 O2 FORMUL 11 HOH *295(H2 O) HELIX 1 1 CYS A 55 ALA A 58 5 4 HELIX 2 2 GLN A 131 THR A 135 1 5 SHEET 1 A 8 ASP A 81 ALA A 87 0 SHEET 2 A 8 GLY A 39 HIS A 46 -1 N GLY A 39 O ALA A 87 SHEET 3 A 8 THR A 114 HIS A 118 -1 O THR A 114 N HIS A 46 SHEET 4 A 8 ARG A 141 ILE A 149 -1 N LEU A 142 O VAL A 117 SHEET 5 A 8 HIS A 3 LYS A 9 -1 N VAL A 5 O GLY A 148 SHEET 6 A 8 THR A 15 GLU A 23 -1 O GLY A 16 N LEU A 8 SHEET 7 A 8 MET A 26 THR A 34 -1 O MET A 26 N GLU A 23 SHEET 8 A 8 LYS A 92 ASP A 99 0 SSBOND 1 CYS A 55 CYS A 144 1555 1555 2.30 LINK ND1 HIS A 44 CU ACU1 A 201 1555 1555 2.02 LINK NE2 HIS A 46 CU ACU1 A 201 1555 1555 1.94 LINK ND1 HIS A 61 ZN ZN A 203 1555 1555 2.01 LINK ND1 HIS A 69 ZN ZN A 203 1555 1555 2.02 LINK ND1 HIS A 78 ZN ZN A 203 1555 1555 2.00 LINK OD1 ASP A 81 ZN ZN A 203 1555 1555 1.97 LINK NE2 HIS A 118 CU ACU1 A 201 1555 1555 2.01 SITE 1 AC1 5 HIS A 44 HIS A 46 HIS A 61 HIS A 118 SITE 2 AC1 5 PEO A 209 SITE 1 AC2 6 HIS A 44 HIS A 46 HIS A 61 HIS A 118 SITE 2 AC2 6 PEO A 209 HOH A 301 SITE 1 AC3 4 HIS A 61 HIS A 69 HIS A 78 ASP A 81 SITE 1 AC4 5 GLY A 88 ASP A 90 GLY A 91 LYS A 92 SITE 2 AC4 5 HOH A 392 SITE 1 AC5 9 ASN A 53 CYS A 55 THR A 56 HOH A 334 SITE 2 AC5 9 HOH A 342 HOH A 399 HOH A 437 HOH A 467 SITE 3 AC5 9 HOH A 472 SITE 1 AC6 3 HIS A 129 GLU A 130 HOH A 335 SITE 1 AC7 7 ASP A 74 GLU A 75 ASN A 76 HOH A 453 SITE 2 AC7 7 HOH A 479 HOH A 496 HOH A 590 SITE 1 AC8 7 GLU A 47 ARG A 113 HOH A 449 HOH A 550 SITE 2 AC8 7 HOH A 567 HOH A 568 HOH A 578 SITE 1 AC9 9 HIS A 46 HIS A 61 HIS A 118 THR A 135 SITE 2 AC9 9 ARG A 141 CU1 A 201 HOH A 301 HOH A 302 SITE 3 AC9 9 HOH A 303 CRYST1 62.563 62.563 163.745 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015984 0.009228 0.000000 0.00000 SCALE2 0.000000 0.018457 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006107 0.00000