data_3F7X # _entry.id 3F7X # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3F7X pdb_00003f7x 10.2210/pdb3f7x/pdb RCSB RCSB050258 ? ? WWPDB D_1000050258 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 391191 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 3F7X _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2008-11-10 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of Putative polyketide cyclase. (NP_743055.1) from PSEUDOMONAS PUTIDA KT2440 at 1.24 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 3F7X _cell.length_a 53.762 _cell.length_b 74.985 _cell.length_c 36.543 _cell.angle_alpha 90.000 _cell.angle_beta 118.030 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3F7X _symmetry.Int_Tables_number 5 _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Putative polyketide cyclase' 17381.354 1 ? ? ? ? 2 non-polymer syn 'UNKNOWN LIGAND' ? 2 ? ? ? ? 3 non-polymer syn 1,2-ETHANEDIOL 62.068 6 ? ? ? ? 4 water nat water 18.015 180 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)GSDKIHHHHHHENLYFQG(MSE)TATELVNAYYAAFNAGD(MSE)PAFLALLSEDVIHDINQGERQ(MSE)GKAR FAAF(MSE)EK(MSE)NRCYRERLADIVV(MSE)QNADGSRAAAEFTVHGQYLADDEGLPTANGQTYVLPAGAFFYIHCG KIARVTNYYNLNDWVEQVA ; _entity_poly.pdbx_seq_one_letter_code_can ;MGSDKIHHHHHHENLYFQGMTATELVNAYYAAFNAGDMPAFLALLSEDVIHDINQGERQMGKARFAAFMEKMNRCYRERL ADIVVMQNADGSRAAAEFTVHGQYLADDEGLPTANGQTYVLPAGAFFYIHCGKIARVTNYYNLNDWVEQVA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier 391191 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 GLY n 1 3 SER n 1 4 ASP n 1 5 LYS n 1 6 ILE n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 HIS n 1 12 HIS n 1 13 GLU n 1 14 ASN n 1 15 LEU n 1 16 TYR n 1 17 PHE n 1 18 GLN n 1 19 GLY n 1 20 MSE n 1 21 THR n 1 22 ALA n 1 23 THR n 1 24 GLU n 1 25 LEU n 1 26 VAL n 1 27 ASN n 1 28 ALA n 1 29 TYR n 1 30 TYR n 1 31 ALA n 1 32 ALA n 1 33 PHE n 1 34 ASN n 1 35 ALA n 1 36 GLY n 1 37 ASP n 1 38 MSE n 1 39 PRO n 1 40 ALA n 1 41 PHE n 1 42 LEU n 1 43 ALA n 1 44 LEU n 1 45 LEU n 1 46 SER n 1 47 GLU n 1 48 ASP n 1 49 VAL n 1 50 ILE n 1 51 HIS n 1 52 ASP n 1 53 ILE n 1 54 ASN n 1 55 GLN n 1 56 GLY n 1 57 GLU n 1 58 ARG n 1 59 GLN n 1 60 MSE n 1 61 GLY n 1 62 LYS n 1 63 ALA n 1 64 ARG n 1 65 PHE n 1 66 ALA n 1 67 ALA n 1 68 PHE n 1 69 MSE n 1 70 GLU n 1 71 LYS n 1 72 MSE n 1 73 ASN n 1 74 ARG n 1 75 CYS n 1 76 TYR n 1 77 ARG n 1 78 GLU n 1 79 ARG n 1 80 LEU n 1 81 ALA n 1 82 ASP n 1 83 ILE n 1 84 VAL n 1 85 VAL n 1 86 MSE n 1 87 GLN n 1 88 ASN n 1 89 ALA n 1 90 ASP n 1 91 GLY n 1 92 SER n 1 93 ARG n 1 94 ALA n 1 95 ALA n 1 96 ALA n 1 97 GLU n 1 98 PHE n 1 99 THR n 1 100 VAL n 1 101 HIS n 1 102 GLY n 1 103 GLN n 1 104 TYR n 1 105 LEU n 1 106 ALA n 1 107 ASP n 1 108 ASP n 1 109 GLU n 1 110 GLY n 1 111 LEU n 1 112 PRO n 1 113 THR n 1 114 ALA n 1 115 ASN n 1 116 GLY n 1 117 GLN n 1 118 THR n 1 119 TYR n 1 120 VAL n 1 121 LEU n 1 122 PRO n 1 123 ALA n 1 124 GLY n 1 125 ALA n 1 126 PHE n 1 127 PHE n 1 128 TYR n 1 129 ILE n 1 130 HIS n 1 131 CYS n 1 132 GLY n 1 133 LYS n 1 134 ILE n 1 135 ALA n 1 136 ARG n 1 137 VAL n 1 138 THR n 1 139 ASN n 1 140 TYR n 1 141 TYR n 1 142 ASN n 1 143 LEU n 1 144 ASN n 1 145 ASP n 1 146 TRP n 1 147 VAL n 1 148 GLU n 1 149 GLN n 1 150 VAL n 1 151 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'NP_743055.1, PP0894, PP_0894' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Pseudomonas putida KT2440' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 160488 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia Coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q88PF6_PSEPK _struct_ref.pdbx_db_accession Q88PF6 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MTATELVNAYYAAFNAGDMPAFLALLSEDVIHDINQGERQMGKARFAAFMEKMNRCYRERLADIVVMQNADGSRAAAEFT VHGQYLADDEGLPTANGQTYVLPAGAFFYIHCGKIARVTNYYNLNDWVEQVA ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3F7X _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 20 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 151 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q88PF6 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 132 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 132 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3F7X MSE A 1 ? UNP Q88PF6 ? ? 'expression tag' -18 1 1 3F7X GLY A 2 ? UNP Q88PF6 ? ? 'expression tag' -17 2 1 3F7X SER A 3 ? UNP Q88PF6 ? ? 'expression tag' -16 3 1 3F7X ASP A 4 ? UNP Q88PF6 ? ? 'expression tag' -15 4 1 3F7X LYS A 5 ? UNP Q88PF6 ? ? 'expression tag' -14 5 1 3F7X ILE A 6 ? UNP Q88PF6 ? ? 'expression tag' -13 6 1 3F7X HIS A 7 ? UNP Q88PF6 ? ? 'expression tag' -12 7 1 3F7X HIS A 8 ? UNP Q88PF6 ? ? 'expression tag' -11 8 1 3F7X HIS A 9 ? UNP Q88PF6 ? ? 'expression tag' -10 9 1 3F7X HIS A 10 ? UNP Q88PF6 ? ? 'expression tag' -9 10 1 3F7X HIS A 11 ? UNP Q88PF6 ? ? 'expression tag' -8 11 1 3F7X HIS A 12 ? UNP Q88PF6 ? ? 'expression tag' -7 12 1 3F7X GLU A 13 ? UNP Q88PF6 ? ? 'expression tag' -6 13 1 3F7X ASN A 14 ? UNP Q88PF6 ? ? 'expression tag' -5 14 1 3F7X LEU A 15 ? UNP Q88PF6 ? ? 'expression tag' -4 15 1 3F7X TYR A 16 ? UNP Q88PF6 ? ? 'expression tag' -3 16 1 3F7X PHE A 17 ? UNP Q88PF6 ? ? 'expression tag' -2 17 1 3F7X GLN A 18 ? UNP Q88PF6 ? ? 'expression tag' -1 18 1 3F7X GLY A 19 ? UNP Q88PF6 ? ? 'expression tag' 0 19 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 UNL non-polymer . 'UNKNOWN LIGAND' ? ? ? VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 3F7X # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 1.87 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 34.24 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details '5.0000% PEG-6000, 0.1M MES pH 6.0, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 300 mm CCD' _diffrn_detector.details 'Adjustable focusing mirrors in K-B geometry' _diffrn_detector.pdbx_collection_date 2008-10-11 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si(111) Double Crystal Monochrometer' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.94645 1.0 2 0.97967 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline 23-ID-B _diffrn_source.type 'APS BEAMLINE 23-ID-B' _diffrn_source.pdbx_wavelength_list 0.94645,0.97967 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site APS # _reflns.entry_id 3F7X _reflns.d_resolution_high 1.24 _reflns.d_resolution_low 40.096 _reflns.number_obs 35808 _reflns.pdbx_Rmerge_I_obs 0.055 _reflns.percent_possible_obs 98.600 _reflns.B_iso_Wilson_estimate 11.700 _reflns.observed_criterion_sigma_I -3.00 _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 11.220 _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal 1.24 1.28 8786 ? 2943 0.515 2.0 ? ? ? ? ? 89.00 ? 1 1.28 1.34 14991 ? 4187 0.390 3.0 ? ? ? ? ? 99.80 ? 2 1.34 1.40 12919 ? 3555 0.290 4.0 ? ? ? ? ? 99.50 ? 3 1.40 1.47 12354 ? 3377 0.218 5.3 ? ? ? ? ? 99.70 ? 4 1.47 1.56 12985 ? 3535 0.147 7.4 ? ? ? ? ? 99.70 ? 5 1.56 1.68 13361 ? 3624 0.106 9.8 ? ? ? ? ? 99.60 ? 6 1.68 1.85 13495 ? 3629 0.078 12.7 ? ? ? ? ? 99.50 ? 7 1.85 2.12 13451 ? 3646 0.056 16.3 ? ? ? ? ? 99.30 ? 8 2.12 2.67 18277 ? 3625 0.058 21.0 ? ? ? ? ? 99.50 ? 9 2.67 40.096 27023 ? 3682 0.044 29.1 ? ? ? ? ? 99.20 ? 10 # _refine.entry_id 3F7X _refine.ls_d_res_high 1.240 _refine.ls_d_res_low 40.096 _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.010 _refine.ls_number_reflns_obs 35806 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1.HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2.A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4. ETHYLENE GLYCOL USED AS A CRYOPROTECTANT WERE MODELED INTO THE STRUCTURE. 5. TWO UN-IDENTIFIED LIGANDS (UNL 1 AND UNL 2) WERE MODELED INTO THE PUTATIVE ACTIVE SITE. 6. THE REGION SURROUNDING THE SIDECHAINS OF GLU 51 AND ARG 55 CONTAINS UNEXPLAINED DIFFERENCE ELECTRON DENSITIES THAT COULD NOT BE RELIABLY MODELED. ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.122 _refine.ls_R_factor_R_work 0.120 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.150 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 1790 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 16.437 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -0.340 _refine.aniso_B[2][2] 0.170 _refine.aniso_B[3][3] 0.250 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.080 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.982 _refine.correlation_coeff_Fo_to_Fc_free 0.974 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.039 _refine.pdbx_overall_ESU_R_Free 0.038 _refine.overall_SU_ML 0.023 _refine.overall_SU_B 1.191 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 50.65 _refine.B_iso_min 7.28 _refine.occupancy_max 1.00 _refine.occupancy_min 0.33 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1035 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 44 _refine_hist.number_atoms_solvent 180 _refine_hist.number_atoms_total 1259 _refine_hist.d_res_high 1.240 _refine_hist.d_res_low 40.096 # loop_ _refine_ls_restr.type _refine_ls_restr.pdbx_refine_id _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 'X-RAY DIFFRACTION' 1192 0.016 0.022 ? ? r_bond_other_d 'X-RAY DIFFRACTION' 831 0.001 0.020 ? ? r_angle_refined_deg 'X-RAY DIFFRACTION' 1625 1.627 1.947 ? ? r_angle_other_deg 'X-RAY DIFFRACTION' 2020 0.900 3.000 ? ? r_dihedral_angle_1_deg 'X-RAY DIFFRACTION' 165 6.097 5.000 ? ? r_dihedral_angle_2_deg 'X-RAY DIFFRACTION' 64 33.838 23.906 ? ? r_dihedral_angle_3_deg 'X-RAY DIFFRACTION' 203 12.830 15.000 ? ? r_dihedral_angle_4_deg 'X-RAY DIFFRACTION' 10 10.965 15.000 ? ? r_chiral_restr 'X-RAY DIFFRACTION' 171 0.098 0.200 ? ? r_gen_planes_refined 'X-RAY DIFFRACTION' 1388 0.007 0.020 ? ? r_gen_planes_other 'X-RAY DIFFRACTION' 265 0.001 0.020 ? ? r_mcbond_it 'X-RAY DIFFRACTION' 712 2.436 3.000 ? ? r_mcbond_other 'X-RAY DIFFRACTION' 290 1.559 3.000 ? ? r_mcangle_it 'X-RAY DIFFRACTION' 1150 3.402 5.000 ? ? r_scbond_it 'X-RAY DIFFRACTION' 480 4.545 8.000 ? ? r_scangle_it 'X-RAY DIFFRACTION' 457 5.947 11.000 ? ? r_rigid_bond_restr 'X-RAY DIFFRACTION' 2023 1.829 3.000 ? ? r_sphericity_free 'X-RAY DIFFRACTION' 222 9.062 3.000 ? ? r_sphericity_bonded 'X-RAY DIFFRACTION' 1989 4.323 3.000 ? ? # _refine_ls_shell.d_res_high 1.240 _refine_ls_shell.d_res_low 1.273 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 88.110 _refine_ls_shell.number_reflns_R_work 2257 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.215 _refine_ls_shell.R_factor_R_free 0.234 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 130 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 2387 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3F7X _struct.title 'Crystal structure of a putative polyketide cyclase (pp0894) from pseudomonas putida kt2440 at 1.24 A resolution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text 'Structural genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, unknown function' _struct_keywords.pdbx_keywords 'UNKNOWN FUNCTION' _struct_keywords.entry_id 3F7X # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 3 ? J N N 4 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 21 ? GLY A 36 ? THR A 2 GLY A 17 1 ? 16 HELX_P HELX_P2 2 ASP A 37 ? LEU A 44 ? ASP A 18 LEU A 25 1 ? 8 HELX_P HELX_P3 3 GLY A 61 ? CYS A 75 ? GLY A 42 CYS A 56 1 ? 15 HELX_P HELX_P4 4 ASN A 142 ? ALA A 151 ? ASN A 123 ALA A 132 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GLY 19 C ? ? ? 1_555 A MSE 20 N ? ? A GLY 0 A MSE 1 1_555 ? ? ? ? ? ? ? 1.350 ? ? covale2 covale both ? A MSE 20 C ? ? ? 1_555 A THR 21 N ? ? A MSE 1 A THR 2 1_555 ? ? ? ? ? ? ? 1.316 ? ? covale3 covale both ? A ASP 37 C ? ? ? 1_555 A MSE 38 N ? ? A ASP 18 A MSE 19 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale4 covale both ? A MSE 38 C ? ? ? 1_555 A PRO 39 N ? ? A MSE 19 A PRO 20 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale5 covale both ? A GLN 59 C ? ? ? 1_555 A MSE 60 N ? ? A GLN 40 A MSE 41 1_555 ? ? ? ? ? ? ? 1.320 ? ? covale6 covale both ? A MSE 60 C ? ? ? 1_555 A GLY 61 N ? ? A MSE 41 A GLY 42 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale7 covale both ? A PHE 68 C ? ? ? 1_555 A MSE 69 N ? ? A PHE 49 A MSE 50 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale8 covale both ? A MSE 69 C ? ? ? 1_555 A GLU 70 N ? ? A MSE 50 A GLU 51 1_555 ? ? ? ? ? ? ? 1.320 ? ? covale9 covale both ? A LYS 71 C ? ? ? 1_555 A MSE 72 N ? ? A LYS 52 A MSE 53 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale10 covale both ? A MSE 72 C ? ? ? 1_555 A ASN 73 N ? ? A MSE 53 A ASN 54 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale11 covale both ? A VAL 85 C ? ? ? 1_555 A MSE 86 N ? ? A VAL 66 A MSE 67 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale12 covale both ? A MSE 86 C ? ? ? 1_555 A GLN 87 N ? ? A MSE 67 A GLN 68 1_555 ? ? ? ? ? ? ? 1.338 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 6 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ARG A 58 ? MSE A 60 ? ARG A 39 MSE A 41 A 2 LEU A 45 ? ASP A 52 ? LEU A 26 ASP A 33 A 3 LYS A 133 ? TYR A 141 ? LYS A 114 TYR A 122 A 4 THR A 118 ? HIS A 130 ? THR A 99 HIS A 111 A 5 ARG A 93 ? TYR A 104 ? ARG A 74 TYR A 85 A 6 TYR A 76 ? GLN A 87 ? TYR A 57 GLN A 68 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O GLN A 59 ? O GLN A 40 N HIS A 51 ? N HIS A 32 A 2 3 N SER A 46 ? N SER A 27 O ILE A 134 ? O ILE A 115 A 3 4 O THR A 138 ? O THR A 119 N PHE A 126 ? N PHE A 107 A 4 5 O LEU A 121 ? O LEU A 102 N VAL A 100 ? N VAL A 81 A 5 6 O ALA A 95 ? O ALA A 76 N MSE A 86 ? N MSE A 67 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A UNL 133 ? 13 'BINDING SITE FOR RESIDUE UNL A 133' AC2 Software A UNL 134 ? 8 'BINDING SITE FOR RESIDUE UNL A 134' AC3 Software A EDO 135 ? 5 'BINDING SITE FOR RESIDUE EDO A 135' AC4 Software A EDO 136 ? 9 'BINDING SITE FOR RESIDUE EDO A 136' AC5 Software A EDO 137 ? 5 'BINDING SITE FOR RESIDUE EDO A 137' AC6 Software A EDO 138 ? 7 'BINDING SITE FOR RESIDUE EDO A 138' AC7 Software A EDO 139 ? 10 'BINDING SITE FOR RESIDUE EDO A 139' AC8 Software A EDO 140 ? 4 'BINDING SITE FOR RESIDUE EDO A 140' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 13 MSE A 72 ? MSE A 53 . ? 1_555 ? 2 AC1 13 TYR A 76 ? TYR A 57 . ? 1_555 ? 3 AC1 13 GLU A 78 ? GLU A 59 . ? 1_555 ? 4 AC1 13 ALA A 123 ? ALA A 104 . ? 1_555 ? 5 AC1 13 ASN A 139 ? ASN A 120 . ? 1_555 ? 6 AC1 13 TYR A 141 ? TYR A 122 . ? 1_555 ? 7 AC1 13 TRP A 146 ? TRP A 127 . ? 1_555 ? 8 AC1 13 UNL C . ? UNL A 134 . ? 1_555 ? 9 AC1 13 EDO D . ? EDO A 135 . ? 1_555 ? 10 AC1 13 HOH J . ? HOH A 195 . ? 1_555 ? 11 AC1 13 HOH J . ? HOH A 201 . ? 1_555 ? 12 AC1 13 HOH J . ? HOH A 239 . ? 1_555 ? 13 AC1 13 HOH J . ? HOH A 249 . ? 1_555 ? 14 AC2 8 PHE A 68 ? PHE A 49 . ? 1_555 ? 15 AC2 8 MSE A 72 ? MSE A 53 . ? 1_555 ? 16 AC2 8 ASP A 108 ? ASP A 89 . ? 1_555 ? 17 AC2 8 UNL B . ? UNL A 133 . ? 1_555 ? 18 AC2 8 HOH J . ? HOH A 146 . ? 1_555 ? 19 AC2 8 HOH J . ? HOH A 158 . ? 1_555 ? 20 AC2 8 HOH J . ? HOH A 268 . ? 1_555 ? 21 AC2 8 HOH J . ? HOH A 275 . ? 1_555 ? 22 AC3 5 TYR A 29 ? TYR A 10 . ? 1_555 ? 23 AC3 5 HIS A 51 ? HIS A 32 . ? 1_555 ? 24 AC3 5 ASN A 139 ? ASN A 120 . ? 1_555 ? 25 AC3 5 UNL B . ? UNL A 133 . ? 1_555 ? 26 AC3 5 HOH J . ? HOH A 196 . ? 1_555 ? 27 AC4 9 PHE A 33 ? PHE A 14 . ? 1_555 ? 28 AC4 9 GLY A 36 ? GLY A 17 . ? 1_555 ? 29 AC4 9 MSE A 72 ? MSE A 53 . ? 1_555 ? 30 AC4 9 ASN A 73 ? ASN A 54 . ? 1_555 ? 31 AC4 9 ARG A 77 ? ARG A 58 . ? 2_555 ? 32 AC4 9 GLU A 78 ? GLU A 59 . ? 1_555 ? 33 AC4 9 HOH J . ? HOH A 160 . ? 1_555 ? 34 AC4 9 HOH J . ? HOH A 199 . ? 1_555 ? 35 AC4 9 HOH J . ? HOH A 280 . ? 1_555 ? 36 AC5 5 ARG A 93 ? ARG A 74 . ? 1_555 ? 37 AC5 5 TYR A 128 ? TYR A 109 . ? 1_555 ? 38 AC5 5 ARG A 136 ? ARG A 117 . ? 1_555 ? 39 AC5 5 EDO I . ? EDO A 140 . ? 2_656 ? 40 AC5 5 HOH J . ? HOH A 279 . ? 1_555 ? 41 AC6 7 ARG A 77 ? ARG A 58 . ? 1_555 ? 42 AC6 7 ARG A 79 ? ARG A 60 . ? 1_555 ? 43 AC6 7 HIS A 101 ? HIS A 82 . ? 1_555 ? 44 AC6 7 HOH J . ? HOH A 177 . ? 1_555 ? 45 AC6 7 HOH J . ? HOH A 187 . ? 1_555 ? 46 AC6 7 HOH J . ? HOH A 300 . ? 2_555 ? 47 AC6 7 HOH J . ? HOH A 314 . ? 2_555 ? 48 AC7 10 ASP A 90 ? ASP A 71 . ? 1_555 ? 49 AC7 10 GLY A 91 ? GLY A 72 . ? 1_555 ? 50 AC7 10 SER A 92 ? SER A 73 . ? 1_555 ? 51 AC7 10 ILE A 129 ? ILE A 110 . ? 1_555 ? 52 AC7 10 CYS A 131 ? CYS A 112 . ? 1_555 ? 53 AC7 10 GLY A 132 ? GLY A 113 . ? 1_555 ? 54 AC7 10 HOH J . ? HOH A 216 . ? 1_555 ? 55 AC7 10 HOH J . ? HOH A 237 . ? 4_546 ? 56 AC7 10 HOH J . ? HOH A 238 . ? 4_546 ? 57 AC7 10 HOH J . ? HOH A 252 . ? 4_546 ? 58 AC8 4 PHE A 98 ? PHE A 79 . ? 1_555 ? 59 AC8 4 THR A 99 ? THR A 80 . ? 1_555 ? 60 AC8 4 EDO F . ? EDO A 137 . ? 2_656 ? 61 AC8 4 HOH J . ? HOH A 188 . ? 1_555 ? # _atom_sites.entry_id 3F7X _atom_sites.fract_transf_matrix[1][1] 0.018600 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.009904 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013336 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.031002 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 -18 ? ? ? A . n A 1 2 GLY 2 -17 ? ? ? A . n A 1 3 SER 3 -16 ? ? ? A . n A 1 4 ASP 4 -15 ? ? ? A . n A 1 5 LYS 5 -14 ? ? ? A . n A 1 6 ILE 6 -13 ? ? ? A . n A 1 7 HIS 7 -12 ? ? ? A . n A 1 8 HIS 8 -11 ? ? ? A . n A 1 9 HIS 9 -10 ? ? ? A . n A 1 10 HIS 10 -9 ? ? ? A . n A 1 11 HIS 11 -8 ? ? ? A . n A 1 12 HIS 12 -7 ? ? ? A . n A 1 13 GLU 13 -6 ? ? ? A . n A 1 14 ASN 14 -5 ? ? ? A . n A 1 15 LEU 15 -4 ? ? ? A . n A 1 16 TYR 16 -3 ? ? ? A . n A 1 17 PHE 17 -2 ? ? ? A . n A 1 18 GLN 18 -1 ? ? ? A . n A 1 19 GLY 19 0 0 GLY GLY A . n A 1 20 MSE 20 1 1 MSE MSE A . n A 1 21 THR 21 2 2 THR THR A . n A 1 22 ALA 22 3 3 ALA ALA A . n A 1 23 THR 23 4 4 THR THR A . n A 1 24 GLU 24 5 5 GLU GLU A . n A 1 25 LEU 25 6 6 LEU LEU A . n A 1 26 VAL 26 7 7 VAL VAL A . n A 1 27 ASN 27 8 8 ASN ASN A . n A 1 28 ALA 28 9 9 ALA ALA A . n A 1 29 TYR 29 10 10 TYR TYR A . n A 1 30 TYR 30 11 11 TYR TYR A . n A 1 31 ALA 31 12 12 ALA ALA A . n A 1 32 ALA 32 13 13 ALA ALA A . n A 1 33 PHE 33 14 14 PHE PHE A . n A 1 34 ASN 34 15 15 ASN ASN A . n A 1 35 ALA 35 16 16 ALA ALA A . n A 1 36 GLY 36 17 17 GLY GLY A . n A 1 37 ASP 37 18 18 ASP ASP A . n A 1 38 MSE 38 19 19 MSE MSE A . n A 1 39 PRO 39 20 20 PRO PRO A . n A 1 40 ALA 40 21 21 ALA ALA A . n A 1 41 PHE 41 22 22 PHE PHE A . n A 1 42 LEU 42 23 23 LEU LEU A . n A 1 43 ALA 43 24 24 ALA ALA A . n A 1 44 LEU 44 25 25 LEU LEU A . n A 1 45 LEU 45 26 26 LEU LEU A . n A 1 46 SER 46 27 27 SER SER A . n A 1 47 GLU 47 28 28 GLU GLU A . n A 1 48 ASP 48 29 29 ASP ASP A . n A 1 49 VAL 49 30 30 VAL VAL A . n A 1 50 ILE 50 31 31 ILE ILE A . n A 1 51 HIS 51 32 32 HIS HIS A . n A 1 52 ASP 52 33 33 ASP ASP A . n A 1 53 ILE 53 34 34 ILE ILE A . n A 1 54 ASN 54 35 35 ASN ASN A . n A 1 55 GLN 55 36 36 GLN GLN A . n A 1 56 GLY 56 37 37 GLY GLY A . n A 1 57 GLU 57 38 38 GLU GLU A . n A 1 58 ARG 58 39 39 ARG ARG A . n A 1 59 GLN 59 40 40 GLN GLN A . n A 1 60 MSE 60 41 41 MSE MSE A . n A 1 61 GLY 61 42 42 GLY GLY A . n A 1 62 LYS 62 43 43 LYS LYS A . n A 1 63 ALA 63 44 44 ALA ALA A . n A 1 64 ARG 64 45 45 ARG ARG A . n A 1 65 PHE 65 46 46 PHE PHE A . n A 1 66 ALA 66 47 47 ALA ALA A . n A 1 67 ALA 67 48 48 ALA ALA A . n A 1 68 PHE 68 49 49 PHE PHE A . n A 1 69 MSE 69 50 50 MSE MSE A . n A 1 70 GLU 70 51 51 GLU GLU A . n A 1 71 LYS 71 52 52 LYS LYS A . n A 1 72 MSE 72 53 53 MSE MSE A . n A 1 73 ASN 73 54 54 ASN ASN A . n A 1 74 ARG 74 55 55 ARG ARG A . n A 1 75 CYS 75 56 56 CYS CYS A . n A 1 76 TYR 76 57 57 TYR TYR A . n A 1 77 ARG 77 58 58 ARG ARG A . n A 1 78 GLU 78 59 59 GLU GLU A . n A 1 79 ARG 79 60 60 ARG ARG A . n A 1 80 LEU 80 61 61 LEU LEU A . n A 1 81 ALA 81 62 62 ALA ALA A . n A 1 82 ASP 82 63 63 ASP ASP A . n A 1 83 ILE 83 64 64 ILE ILE A . n A 1 84 VAL 84 65 65 VAL VAL A . n A 1 85 VAL 85 66 66 VAL VAL A . n A 1 86 MSE 86 67 67 MSE MSE A . n A 1 87 GLN 87 68 68 GLN GLN A . n A 1 88 ASN 88 69 69 ASN ASN A . n A 1 89 ALA 89 70 70 ALA ALA A . n A 1 90 ASP 90 71 71 ASP ASP A . n A 1 91 GLY 91 72 72 GLY GLY A . n A 1 92 SER 92 73 73 SER SER A . n A 1 93 ARG 93 74 74 ARG ARG A . n A 1 94 ALA 94 75 75 ALA ALA A . n A 1 95 ALA 95 76 76 ALA ALA A . n A 1 96 ALA 96 77 77 ALA ALA A . n A 1 97 GLU 97 78 78 GLU GLU A . n A 1 98 PHE 98 79 79 PHE PHE A . n A 1 99 THR 99 80 80 THR THR A . n A 1 100 VAL 100 81 81 VAL VAL A . n A 1 101 HIS 101 82 82 HIS HIS A . n A 1 102 GLY 102 83 83 GLY GLY A . n A 1 103 GLN 103 84 84 GLN GLN A . n A 1 104 TYR 104 85 85 TYR TYR A . n A 1 105 LEU 105 86 86 LEU LEU A . n A 1 106 ALA 106 87 87 ALA ALA A . n A 1 107 ASP 107 88 88 ASP ASP A . n A 1 108 ASP 108 89 89 ASP ASP A . n A 1 109 GLU 109 90 90 GLU GLU A . n A 1 110 GLY 110 91 91 GLY GLY A . n A 1 111 LEU 111 92 92 LEU LEU A . n A 1 112 PRO 112 93 93 PRO PRO A . n A 1 113 THR 113 94 94 THR THR A . n A 1 114 ALA 114 95 95 ALA ALA A . n A 1 115 ASN 115 96 96 ASN ASN A . n A 1 116 GLY 116 97 97 GLY GLY A . n A 1 117 GLN 117 98 98 GLN GLN A . n A 1 118 THR 118 99 99 THR THR A . n A 1 119 TYR 119 100 100 TYR TYR A . n A 1 120 VAL 120 101 101 VAL VAL A . n A 1 121 LEU 121 102 102 LEU LEU A . n A 1 122 PRO 122 103 103 PRO PRO A . n A 1 123 ALA 123 104 104 ALA ALA A . n A 1 124 GLY 124 105 105 GLY GLY A . n A 1 125 ALA 125 106 106 ALA ALA A . n A 1 126 PHE 126 107 107 PHE PHE A . n A 1 127 PHE 127 108 108 PHE PHE A . n A 1 128 TYR 128 109 109 TYR TYR A . n A 1 129 ILE 129 110 110 ILE ILE A . n A 1 130 HIS 130 111 111 HIS HIS A . n A 1 131 CYS 131 112 112 CYS CYS A . n A 1 132 GLY 132 113 113 GLY GLY A . n A 1 133 LYS 133 114 114 LYS LYS A . n A 1 134 ILE 134 115 115 ILE ILE A . n A 1 135 ALA 135 116 116 ALA ALA A . n A 1 136 ARG 136 117 117 ARG ARG A . n A 1 137 VAL 137 118 118 VAL VAL A . n A 1 138 THR 138 119 119 THR THR A . n A 1 139 ASN 139 120 120 ASN ASN A . n A 1 140 TYR 140 121 121 TYR TYR A . n A 1 141 TYR 141 122 122 TYR TYR A . n A 1 142 ASN 142 123 123 ASN ASN A . n A 1 143 LEU 143 124 124 LEU LEU A . n A 1 144 ASN 144 125 125 ASN ASN A . n A 1 145 ASP 145 126 126 ASP ASP A . n A 1 146 TRP 146 127 127 TRP TRP A . n A 1 147 VAL 147 128 128 VAL VAL A . n A 1 148 GLU 148 129 129 GLU GLU A . n A 1 149 GLN 149 130 130 GLN GLN A . n A 1 150 VAL 150 131 131 VAL VAL A . n A 1 151 ALA 151 132 132 ALA ALA A . n # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 UNL 1 133 1 UNL UNL A . C 2 UNL 1 134 2 UNL UNL A . D 3 EDO 1 135 3 EDO EDO A . E 3 EDO 1 136 4 EDO EDO A . F 3 EDO 1 137 5 EDO EDO A . G 3 EDO 1 138 6 EDO EDO A . H 3 EDO 1 139 7 EDO EDO A . I 3 EDO 1 140 8 EDO EDO A . J 4 HOH 1 141 141 HOH HOH A . J 4 HOH 2 142 142 HOH HOH A . J 4 HOH 3 143 143 HOH HOH A . J 4 HOH 4 144 144 HOH HOH A . J 4 HOH 5 145 145 HOH HOH A . J 4 HOH 6 146 146 HOH HOH A . J 4 HOH 7 147 147 HOH HOH A . J 4 HOH 8 148 148 HOH HOH A . J 4 HOH 9 149 149 HOH HOH A . J 4 HOH 10 150 150 HOH HOH A . J 4 HOH 11 151 151 HOH HOH A . J 4 HOH 12 152 152 HOH HOH A . J 4 HOH 13 153 153 HOH HOH A . J 4 HOH 14 154 154 HOH HOH A . J 4 HOH 15 155 155 HOH HOH A . J 4 HOH 16 156 156 HOH HOH A . J 4 HOH 17 157 157 HOH HOH A . J 4 HOH 18 158 158 HOH HOH A . J 4 HOH 19 159 159 HOH HOH A . J 4 HOH 20 160 160 HOH HOH A . J 4 HOH 21 161 161 HOH HOH A . J 4 HOH 22 162 162 HOH HOH A . J 4 HOH 23 163 163 HOH HOH A . J 4 HOH 24 164 164 HOH HOH A . J 4 HOH 25 165 165 HOH HOH A . J 4 HOH 26 166 166 HOH HOH A . J 4 HOH 27 167 167 HOH HOH A . J 4 HOH 28 168 168 HOH HOH A . J 4 HOH 29 169 169 HOH HOH A . J 4 HOH 30 170 170 HOH HOH A . J 4 HOH 31 171 171 HOH HOH A . J 4 HOH 32 172 172 HOH HOH A . J 4 HOH 33 173 173 HOH HOH A . J 4 HOH 34 174 174 HOH HOH A . J 4 HOH 35 175 175 HOH HOH A . J 4 HOH 36 176 176 HOH HOH A . J 4 HOH 37 177 177 HOH HOH A . J 4 HOH 38 178 178 HOH HOH A . J 4 HOH 39 179 179 HOH HOH A . J 4 HOH 40 180 180 HOH HOH A . J 4 HOH 41 181 181 HOH HOH A . J 4 HOH 42 182 182 HOH HOH A . J 4 HOH 43 183 183 HOH HOH A . J 4 HOH 44 184 184 HOH HOH A . J 4 HOH 45 185 185 HOH HOH A . J 4 HOH 46 186 186 HOH HOH A . J 4 HOH 47 187 187 HOH HOH A . J 4 HOH 48 188 188 HOH HOH A . J 4 HOH 49 189 9 HOH HOH A . J 4 HOH 50 190 10 HOH HOH A . J 4 HOH 51 191 11 HOH HOH A . J 4 HOH 52 192 12 HOH HOH A . J 4 HOH 53 193 13 HOH HOH A . J 4 HOH 54 194 14 HOH HOH A . J 4 HOH 55 195 15 HOH HOH A . J 4 HOH 56 196 16 HOH HOH A . J 4 HOH 57 197 17 HOH HOH A . J 4 HOH 58 198 18 HOH HOH A . J 4 HOH 59 199 19 HOH HOH A . J 4 HOH 60 200 20 HOH HOH A . J 4 HOH 61 201 21 HOH HOH A . J 4 HOH 62 202 22 HOH HOH A . J 4 HOH 63 203 23 HOH HOH A . J 4 HOH 64 204 24 HOH HOH A . J 4 HOH 65 205 25 HOH HOH A . J 4 HOH 66 206 26 HOH HOH A . J 4 HOH 67 207 27 HOH HOH A . J 4 HOH 68 208 28 HOH HOH A . J 4 HOH 69 209 29 HOH HOH A . J 4 HOH 70 210 30 HOH HOH A . J 4 HOH 71 211 31 HOH HOH A . J 4 HOH 72 212 32 HOH HOH A . J 4 HOH 73 213 33 HOH HOH A . J 4 HOH 74 214 34 HOH HOH A . J 4 HOH 75 215 35 HOH HOH A . J 4 HOH 76 216 36 HOH HOH A . J 4 HOH 77 217 37 HOH HOH A . J 4 HOH 78 218 38 HOH HOH A . J 4 HOH 79 219 39 HOH HOH A . J 4 HOH 80 220 40 HOH HOH A . J 4 HOH 81 221 41 HOH HOH A . J 4 HOH 82 222 42 HOH HOH A . J 4 HOH 83 223 43 HOH HOH A . J 4 HOH 84 224 44 HOH HOH A . J 4 HOH 85 225 45 HOH HOH A . J 4 HOH 86 226 46 HOH HOH A . J 4 HOH 87 227 47 HOH HOH A . J 4 HOH 88 228 48 HOH HOH A . J 4 HOH 89 229 49 HOH HOH A . J 4 HOH 90 230 50 HOH HOH A . J 4 HOH 91 231 51 HOH HOH A . J 4 HOH 92 232 52 HOH HOH A . J 4 HOH 93 233 53 HOH HOH A . J 4 HOH 94 234 54 HOH HOH A . J 4 HOH 95 235 55 HOH HOH A . J 4 HOH 96 236 56 HOH HOH A . J 4 HOH 97 237 57 HOH HOH A . J 4 HOH 98 238 58 HOH HOH A . J 4 HOH 99 239 59 HOH HOH A . J 4 HOH 100 240 60 HOH HOH A . J 4 HOH 101 241 61 HOH HOH A . J 4 HOH 102 242 62 HOH HOH A . J 4 HOH 103 243 63 HOH HOH A . J 4 HOH 104 244 64 HOH HOH A . J 4 HOH 105 245 65 HOH HOH A . J 4 HOH 106 246 66 HOH HOH A . J 4 HOH 107 247 67 HOH HOH A . J 4 HOH 108 248 68 HOH HOH A . J 4 HOH 109 249 69 HOH HOH A . J 4 HOH 110 250 70 HOH HOH A . J 4 HOH 111 251 71 HOH HOH A . J 4 HOH 112 252 72 HOH HOH A . J 4 HOH 113 253 73 HOH HOH A . J 4 HOH 114 254 74 HOH HOH A . J 4 HOH 115 255 75 HOH HOH A . J 4 HOH 116 256 76 HOH HOH A . J 4 HOH 117 257 77 HOH HOH A . J 4 HOH 118 258 78 HOH HOH A . J 4 HOH 119 259 79 HOH HOH A . J 4 HOH 120 260 80 HOH HOH A . J 4 HOH 121 261 81 HOH HOH A . J 4 HOH 122 262 82 HOH HOH A . J 4 HOH 123 263 83 HOH HOH A . J 4 HOH 124 264 84 HOH HOH A . J 4 HOH 125 265 85 HOH HOH A . J 4 HOH 126 266 86 HOH HOH A . J 4 HOH 127 267 87 HOH HOH A . J 4 HOH 128 268 88 HOH HOH A . J 4 HOH 129 269 89 HOH HOH A . J 4 HOH 130 270 90 HOH HOH A . J 4 HOH 131 271 91 HOH HOH A . J 4 HOH 132 272 92 HOH HOH A . J 4 HOH 133 273 93 HOH HOH A . J 4 HOH 134 274 94 HOH HOH A . J 4 HOH 135 275 95 HOH HOH A . J 4 HOH 136 276 96 HOH HOH A . J 4 HOH 137 277 97 HOH HOH A . J 4 HOH 138 278 98 HOH HOH A . J 4 HOH 139 279 99 HOH HOH A . J 4 HOH 140 280 100 HOH HOH A . J 4 HOH 141 281 101 HOH HOH A . J 4 HOH 142 282 102 HOH HOH A . J 4 HOH 143 283 103 HOH HOH A . J 4 HOH 144 284 104 HOH HOH A . J 4 HOH 145 285 105 HOH HOH A . J 4 HOH 146 286 106 HOH HOH A . J 4 HOH 147 287 107 HOH HOH A . J 4 HOH 148 288 108 HOH HOH A . J 4 HOH 149 289 109 HOH HOH A . J 4 HOH 150 290 110 HOH HOH A . J 4 HOH 151 291 111 HOH HOH A . J 4 HOH 152 292 112 HOH HOH A . J 4 HOH 153 293 113 HOH HOH A . J 4 HOH 154 294 114 HOH HOH A . J 4 HOH 155 295 115 HOH HOH A . J 4 HOH 156 296 116 HOH HOH A . J 4 HOH 157 297 117 HOH HOH A . J 4 HOH 158 298 118 HOH HOH A . J 4 HOH 159 299 119 HOH HOH A . J 4 HOH 160 300 120 HOH HOH A . J 4 HOH 161 301 121 HOH HOH A . J 4 HOH 162 302 122 HOH HOH A . J 4 HOH 163 303 123 HOH HOH A . J 4 HOH 164 304 124 HOH HOH A . J 4 HOH 165 305 125 HOH HOH A . J 4 HOH 166 306 126 HOH HOH A . J 4 HOH 167 307 127 HOH HOH A . J 4 HOH 168 308 128 HOH HOH A . J 4 HOH 169 309 129 HOH HOH A . J 4 HOH 170 310 130 HOH HOH A . J 4 HOH 171 311 131 HOH HOH A . J 4 HOH 172 312 132 HOH HOH A . J 4 HOH 173 313 133 HOH HOH A . J 4 HOH 174 314 134 HOH HOH A . J 4 HOH 175 315 135 HOH HOH A . J 4 HOH 176 316 136 HOH HOH A . J 4 HOH 177 317 137 HOH HOH A . J 4 HOH 178 318 138 HOH HOH A . J 4 HOH 179 319 139 HOH HOH A . J 4 HOH 180 320 140 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 20 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 38 A MSE 19 ? MET SELENOMETHIONINE 3 A MSE 60 A MSE 41 ? MET SELENOMETHIONINE 4 A MSE 69 A MSE 50 ? MET SELENOMETHIONINE 5 A MSE 72 A MSE 53 ? MET SELENOMETHIONINE 6 A MSE 86 A MSE 67 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5500 ? 1 MORE 14 ? 1 'SSA (A^2)' 12540 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1.0000000000 0.0000000000 0.0000000000 36.5892088291 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 32.2565666555 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-11-25 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-25 4 'Structure model' 1 3 2019-07-24 5 'Structure model' 1 4 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' 'Refinement description' 6 5 'Structure model' 'Database references' 7 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' software 3 4 'Structure model' struct_conn 4 5 'Structure model' database_2 5 5 'Structure model' struct_ref_seq_dif 6 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.name' 3 4 'Structure model' '_software.classification' 4 4 'Structure model' '_software.contact_author' 5 4 'Structure model' '_software.contact_author_email' 6 4 'Structure model' '_software.language' 7 4 'Structure model' '_software.location' 8 4 'Structure model' '_software.name' 9 4 'Structure model' '_software.type' 10 4 'Structure model' '_software.version' 11 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 12 5 'Structure model' '_database_2.pdbx_DOI' 13 5 'Structure model' '_database_2.pdbx_database_accession' 14 5 'Structure model' '_struct_ref_seq_dif.details' 15 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 16 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 17 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _phasing.method MAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.5.0063 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 1 PHENIX . ? package 'P.D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 2 SHELX . ? package 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 3 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 4 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 5 PDB_EXTRACT 3.006 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 XDS . ? ? ? ? 'data reduction' ? ? ? 7 SHELXD . ? ? ? ? phasing ? ? ? 8 autoSHARP . ? ? ? ? phasing ? ? ? 9 # _pdbx_entry_details.entry_id 3F7X _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;SEQUENCE THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG, WITH THE CRYSTALLIZED PROTEIN CONTAINING THE PURIFICATION TAG FOLLOWED BY THE TARGET SEQUENCE. ; _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 242 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 284 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.19 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 259 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 319 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 1_554 _pdbx_validate_symm_contact.dist 2.18 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CD A GLU 51 ? B OE1 A GLU 51 ? B 1.319 1.252 0.067 0.011 N 2 1 CB A CYS 112 ? B SG A CYS 112 ? B 1.663 1.812 -0.149 0.016 N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ASN _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 96 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -146.42 _pdbx_validate_torsion.psi 25.99 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A MSE 41 ? CE ? A MSE 60 CE 2 1 Y 1 A GLU 129 ? CD ? A GLU 148 CD 3 1 Y 1 A GLU 129 ? OE1 ? A GLU 148 OE1 4 1 Y 1 A GLU 129 ? OE2 ? A GLU 148 OE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE -18 ? A MSE 1 2 1 Y 1 A GLY -17 ? A GLY 2 3 1 Y 1 A SER -16 ? A SER 3 4 1 Y 1 A ASP -15 ? A ASP 4 5 1 Y 1 A LYS -14 ? A LYS 5 6 1 Y 1 A ILE -13 ? A ILE 6 7 1 Y 1 A HIS -12 ? A HIS 7 8 1 Y 1 A HIS -11 ? A HIS 8 9 1 Y 1 A HIS -10 ? A HIS 9 10 1 Y 1 A HIS -9 ? A HIS 10 11 1 Y 1 A HIS -8 ? A HIS 11 12 1 Y 1 A HIS -7 ? A HIS 12 13 1 Y 1 A GLU -6 ? A GLU 13 14 1 Y 1 A ASN -5 ? A ASN 14 15 1 Y 1 A LEU -4 ? A LEU 15 16 1 Y 1 A TYR -3 ? A TYR 16 17 1 Y 1 A PHE -2 ? A PHE 17 18 1 Y 1 A GLN -1 ? A GLN 18 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'UNKNOWN LIGAND' UNL 3 1,2-ETHANEDIOL EDO 4 water HOH #