HEADER LIGASE/DNA 12-NOV-08 3F8I TITLE MOUSE UHRF1 SRA DOMAIN BOUND WITH HEMI-METHYLATED CPG, CRYSTAL TITLE 2 STRUCTURE IN SPACE GROUP P21 COMPND MOL_ID: 1; COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE UHRF1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: YDG DOMAIN: UNP RESIDUES 419-628; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: 5'-D(*DCP*DCP*DAP*DTP*DGP*(5CM)P*DGP*DCP*DTP*DGP*DAP*DC)- COMPND 8 3'; COMPND 9 CHAIN: D, F; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: 5'-D(*DGP*DTP*DCP*DAP*DGP*DCP*DGP*DCP*DAP*DTP*DGP*DG)-3'; COMPND 13 CHAIN: E, G; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: UHRF1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PXC666; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 OTHER_DETAILS: SYNTHETIC DNA OLIGO; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES; SOURCE 15 OTHER_DETAILS: SYNTHETIC DNA OLIGO KEYWDS UHRF1, BASE FLIPPING, 5-METHYLCYTOSINE, CPG METHYLATION, CELL CYCLE, KEYWDS 2 DEVELOPMENTAL PROTEIN, DNA DAMAGE, DNA REPAIR, DNA-BINDING, LIGASE, KEYWDS 3 METAL-BINDING, NUCLEUS, PHOSPHOPROTEIN, TRANSCRIPTION, TRANSCRIPTION KEYWDS 4 REGULATION, UBL CONJUGATION, UBL CONJUGATION PATHWAY, ZINC, ZINC- KEYWDS 5 FINGER, LIGASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.HASHIMOTO,J.R.HORTON,X.ZHANG,X.CHENG REVDAT 4 06-SEP-23 3F8I 1 COMPND SOURCE DBREF SEQADV REVDAT 4 2 1 LINK REVDAT 3 24-MAR-09 3F8I 1 JRNL REVDAT 2 20-JAN-09 3F8I 1 JRNL REVDAT 1 06-JAN-09 3F8I 0 JRNL AUTH H.HASHIMOTO,J.R.HORTON,X.ZHANG,X.CHENG JRNL TITL UHRF1, A MODULAR MULTI-DOMAIN PROTEIN, REGULATES JRNL TITL 2 REPLICATION-COUPLED CROSSTALK BETWEEN DNA METHYLATION AND JRNL TITL 3 HISTONE MODIFICATIONS. JRNL REF EPIGENETICS V. 4 8 2009 JRNL REFN ISSN 1559-2294 JRNL PMID 19077538 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH H.HASHIMOTO,J.R.HORTON,X.ZHANG,M.BOSTICK,S.E.JACOBSEN, REMARK 1 AUTH 2 X.CHENG REMARK 1 TITL THE SRA DOMAIN OF UHRF1 FLIPS 5-METHYLCYTOSINE OUT OF THE REMARK 1 TITL 2 DNA HELIX. REMARK 1 REF NATURE V. 455 826 2008 REMARK 1 REFN ISSN 0028-0836 REMARK 1 PMID 18772888 REMARK 1 DOI 10.1038/NATURE07280 REMARK 2 REMARK 2 RESOLUTION. 2.29 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.29 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.53 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 622448.070 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 88.5 REMARK 3 NUMBER OF REFLECTIONS : 27777 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1351 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.29 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.37 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 63.60 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1869 REMARK 3 BIN R VALUE (WORKING SET) : 0.3590 REMARK 3 BIN FREE R VALUE : 0.4220 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 101 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.042 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3204 REMARK 3 NUCLEIC ACID ATOMS : 974 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 135 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 19.56000 REMARK 3 B22 (A**2) : -17.03000 REMARK 3 B33 (A**2) : -2.53000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 7.74000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.31 REMARK 3 ESD FROM SIGMAA (A) : 0.39 REMARK 3 LOW RESOLUTION CUTOFF (A) : 35.0 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.38 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.45 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.100 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.70 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.080 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.220 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.960 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.940 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.950 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.40 REMARK 3 BSOL : 32.01 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ION.PARAM REMARK 3 PARAMETER FILE 3 : WATER.PARAM REMARK 3 PARAMETER FILE 4 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3F8I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-NOV-08. REMARK 100 THE DEPOSITION ID IS D_1000050279. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-APR-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30041 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.290 REMARK 200 RESOLUTION RANGE LOW (A) : 34.530 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.10200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.29 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.35200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2ZO0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 0.4M NACL, PH 7.0, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 31.20800 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: ASYMMETRIC UNIT CONTAINS TWO SRA-DNA COMPLEXES. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, F, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 623 REMARK 465 LYS A 624 REMARK 465 SER A 625 REMARK 465 ARG A 626 REMARK 465 LYS A 627 REMARK 465 ARG A 628 REMARK 465 GLU B 623 REMARK 465 LYS B 624 REMARK 465 SER B 625 REMARK 465 ARG B 626 REMARK 465 LYS B 627 REMARK 465 ARG B 628 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 529 CG CD OE1 OE2 REMARK 470 LYS A 547 CG CD CE NZ REMARK 470 GLU A 597 CG CD OE1 OE2 REMARK 470 GLU A 613 CG CD OE1 OE2 REMARK 470 GLU A 617 CG CD OE1 OE2 REMARK 470 LYS A 622 CG CD CE NZ REMARK 470 GLU B 529 CG CD OE1 OE2 REMARK 470 LYS B 547 CG CD CE NZ REMARK 470 ARG B 596 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 597 CD OE1 OE2 REMARK 470 GLU B 613 CG CD OE1 OE2 REMARK 470 GLU B 617 CG CD OE1 OE2 REMARK 470 ASN B 621 CG OD1 ND2 REMARK 470 LYS B 622 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 451 -54.42 -124.52 REMARK 500 ASP A 460 -56.92 -137.99 REMARK 500 ASN A 508 -127.40 39.75 REMARK 500 ASP A 530 70.75 87.44 REMARK 500 TRP A 531 -39.92 -36.29 REMARK 500 ASN B 421 30.91 -97.19 REMARK 500 VAL B 451 -57.07 -126.26 REMARK 500 ASP B 460 -56.02 -131.46 REMARK 500 ASN B 508 -125.70 44.28 REMARK 500 ASP B 530 84.71 75.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DG E 433 0.08 SIDE CHAIN REMARK 500 DG G 433 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2ZO0 RELATED DB: PDB REMARK 900 SRA-DNA COMPLEX IN P2(1)2(1)2(1) SPACE GROUP REMARK 900 RELATED ID: 2ZO1 RELATED DB: PDB REMARK 900 SRA-DNA COMPLEX IN P4(1)2(1)2 SPACE GROUP REMARK 900 RELATED ID: 2ZO2 RELATED DB: PDB REMARK 900 SRA-DNA NON-SPECIFIC COMPLEX IN P6(1)22 SPACE GROUP REMARK 900 RELATED ID: 3F8J RELATED DB: PDB REMARK 900 SRA-DNA COMPLEX IN C222(1) SPACE GROUP DBREF 3F8I A 418 628 UNP Q8VDF2 UHRF1_MOUSE 418 628 DBREF 3F8I B 418 628 UNP Q8VDF2 UHRF1_MOUSE 418 628 DBREF 3F8I D 402 413 PDB 3F8I 3F8I 402 413 DBREF 3F8I E 421 433 PDB 3F8I 3F8I 421 433 DBREF 3F8I F 402 413 PDB 3F8I 3F8I 402 413 DBREF 3F8I G 421 433 PDB 3F8I 3F8I 421 433 SEQADV 3F8I HIS A 417 UNP Q8VDF2 EXPRESSION TAG SEQADV 3F8I MET A 418 UNP Q8VDF2 VAL 418 CONFLICT SEQADV 3F8I HIS B 417 UNP Q8VDF2 EXPRESSION TAG SEQADV 3F8I MET B 418 UNP Q8VDF2 VAL 418 CONFLICT SEQRES 1 A 212 HIS MET PRO ALA ASN HIS PHE GLY PRO ILE PRO GLY VAL SEQRES 2 A 212 PRO VAL GLY THR MET TRP ARG PHE ARG VAL GLN VAL SER SEQRES 3 A 212 GLU SER GLY VAL HIS ARG PRO HIS VAL ALA GLY ILE HIS SEQRES 4 A 212 GLY ARG SER ASN ASP GLY ALA TYR SER LEU VAL LEU ALA SEQRES 5 A 212 GLY GLY TYR GLU ASP ASP VAL ASP ASN GLY ASN TYR PHE SEQRES 6 A 212 THR TYR THR GLY SER GLY GLY ARG ASP LEU SER GLY ASN SEQRES 7 A 212 LYS ARG THR ALA GLY GLN SER SER ASP GLN LYS LEU THR SEQRES 8 A 212 ASN ASN ASN ARG ALA LEU ALA LEU ASN CYS HIS SER PRO SEQRES 9 A 212 ILE ASN GLU LYS GLY ALA GLU ALA GLU ASP TRP ARG GLN SEQRES 10 A 212 GLY LYS PRO VAL ARG VAL VAL ARG ASN MET LYS GLY GLY SEQRES 11 A 212 LYS HIS SER LYS TYR ALA PRO ALA GLU GLY ASN ARG TYR SEQRES 12 A 212 ASP GLY ILE TYR LYS VAL VAL LYS TYR TRP PRO GLU ARG SEQRES 13 A 212 GLY LYS SER GLY PHE LEU VAL TRP ARG TYR LEU LEU ARG SEQRES 14 A 212 ARG ASP ASP THR GLU PRO GLU PRO TRP THR ARG GLU GLY SEQRES 15 A 212 LYS ASP ARG THR ARG GLN LEU GLY LEU THR MET GLN TYR SEQRES 16 A 212 PRO GLU GLY TYR LEU GLU ALA LEU ALA ASN LYS GLU LYS SEQRES 17 A 212 SER ARG LYS ARG SEQRES 1 B 212 HIS MET PRO ALA ASN HIS PHE GLY PRO ILE PRO GLY VAL SEQRES 2 B 212 PRO VAL GLY THR MET TRP ARG PHE ARG VAL GLN VAL SER SEQRES 3 B 212 GLU SER GLY VAL HIS ARG PRO HIS VAL ALA GLY ILE HIS SEQRES 4 B 212 GLY ARG SER ASN ASP GLY ALA TYR SER LEU VAL LEU ALA SEQRES 5 B 212 GLY GLY TYR GLU ASP ASP VAL ASP ASN GLY ASN TYR PHE SEQRES 6 B 212 THR TYR THR GLY SER GLY GLY ARG ASP LEU SER GLY ASN SEQRES 7 B 212 LYS ARG THR ALA GLY GLN SER SER ASP GLN LYS LEU THR SEQRES 8 B 212 ASN ASN ASN ARG ALA LEU ALA LEU ASN CYS HIS SER PRO SEQRES 9 B 212 ILE ASN GLU LYS GLY ALA GLU ALA GLU ASP TRP ARG GLN SEQRES 10 B 212 GLY LYS PRO VAL ARG VAL VAL ARG ASN MET LYS GLY GLY SEQRES 11 B 212 LYS HIS SER LYS TYR ALA PRO ALA GLU GLY ASN ARG TYR SEQRES 12 B 212 ASP GLY ILE TYR LYS VAL VAL LYS TYR TRP PRO GLU ARG SEQRES 13 B 212 GLY LYS SER GLY PHE LEU VAL TRP ARG TYR LEU LEU ARG SEQRES 14 B 212 ARG ASP ASP THR GLU PRO GLU PRO TRP THR ARG GLU GLY SEQRES 15 B 212 LYS ASP ARG THR ARG GLN LEU GLY LEU THR MET GLN TYR SEQRES 16 B 212 PRO GLU GLY TYR LEU GLU ALA LEU ALA ASN LYS GLU LYS SEQRES 17 B 212 SER ARG LYS ARG SEQRES 1 D 12 DC DC DA DT DG 5CM DG DC DT DG DA DC SEQRES 1 E 12 DG DT DC DA DG DC DG DC DA DT DG DG SEQRES 1 F 12 DC DC DA DT DG 5CM DG DC DT DG DA DC SEQRES 1 G 12 DG DT DC DA DG DC DG DC DA DT DG DG MODRES 3F8I 5CM D 407 DC MODRES 3F8I 5CM F 407 DC HET 5CM D 407 20 HET 5CM F 407 20 HETNAM 5CM 5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE FORMUL 3 5CM 2(C10 H16 N3 O7 P) FORMUL 7 HOH *135(H2 O) HELIX 1 1 PHE A 437 SER A 444 1 8 HELIX 2 2 THR A 507 LEU A 515 1 9 HELIX 3 3 ASP A 530 GLY A 534 5 5 HELIX 4 4 LYS A 544 LYS A 547 5 4 HELIX 5 5 THR A 595 LEU A 605 1 11 HELIX 6 6 GLY A 614 ASN A 621 1 8 HELIX 7 7 PHE B 437 SER B 444 1 8 HELIX 8 8 THR B 507 LEU B 515 1 9 HELIX 9 9 ASP B 530 GLY B 534 5 5 HELIX 10 10 LYS B 544 HIS B 548 5 5 HELIX 11 11 THR B 595 LEU B 605 1 11 HELIX 12 12 GLY B 614 LYS B 622 1 9 SHEET 1 A 5 MET A 434 TRP A 435 0 SHEET 2 A 5 ASN A 557 ARG A 572 -1 O ASN A 557 N TRP A 435 SHEET 3 A 5 LEU A 578 ARG A 586 -1 O LEU A 583 N LYS A 567 SHEET 4 A 5 TYR A 480 THR A 484 -1 N TYR A 483 O TYR A 582 SHEET 5 A 5 VAL A 475 ASN A 477 -1 N VAL A 475 O THR A 482 SHEET 1 B 5 ILE A 454 ARG A 457 0 SHEET 2 B 5 GLY A 461 LEU A 467 -1 O TYR A 463 N HIS A 455 SHEET 3 B 5 VAL A 537 ASN A 542 1 O ASN A 542 N LEU A 467 SHEET 4 B 5 ASN A 557 ARG A 572 -1 O ARG A 558 N ARG A 541 SHEET 5 B 5 ALA A 526 GLU A 527 -1 N ALA A 526 O TYR A 568 SHEET 1 C 5 MET B 434 TRP B 435 0 SHEET 2 C 5 ASN B 557 ARG B 572 -1 O ASN B 557 N TRP B 435 SHEET 3 C 5 LEU B 578 ARG B 586 -1 O LEU B 583 N LYS B 567 SHEET 4 C 5 TYR B 480 THR B 484 -1 N PHE B 481 O LEU B 584 SHEET 5 C 5 VAL B 475 ASP B 476 -1 N VAL B 475 O THR B 482 SHEET 1 D 5 ILE B 454 ARG B 457 0 SHEET 2 D 5 GLY B 461 LEU B 467 -1 O TYR B 463 N HIS B 455 SHEET 3 D 5 VAL B 537 ASN B 542 1 O ARG B 538 N TYR B 463 SHEET 4 D 5 ASN B 557 ARG B 572 -1 O ASP B 560 N VAL B 539 SHEET 5 D 5 ALA B 526 GLU B 527 -1 N ALA B 526 O TYR B 568 LINK O3' DG D 406 P 5CM D 407 1555 1555 1.61 LINK O3' 5CM D 407 P DG D 408 1555 1555 1.60 LINK O3' DG F 406 P 5CM F 407 1555 1555 1.61 LINK O3' 5CM F 407 P DG F 408 1555 1555 1.61 CRYST1 50.084 62.416 113.447 90.00 98.92 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019966 0.000000 0.003134 0.00000 SCALE2 0.000000 0.016022 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008923 0.00000 CONECT 3291 3322 CONECT 3305 3306 3311 3314 CONECT 3306 3305 3307 3312 CONECT 3307 3306 3308 CONECT 3308 3307 3309 3313 CONECT 3309 3308 3310 3311 CONECT 3310 3309 CONECT 3311 3305 3309 CONECT 3312 3306 CONECT 3313 3308 CONECT 3314 3305 3315 3318 CONECT 3315 3314 3316 CONECT 3316 3315 3317 3319 CONECT 3317 3316 3318 3320 CONECT 3318 3314 3317 CONECT 3319 3316 3325 CONECT 3320 3317 3321 CONECT 3321 3320 3322 CONECT 3322 3291 3321 3323 3324 CONECT 3323 3322 CONECT 3324 3322 CONECT 3325 3319 CONECT 3780 3811 CONECT 3794 3795 3800 3803 CONECT 3795 3794 3796 3801 CONECT 3796 3795 3797 CONECT 3797 3796 3798 3802 CONECT 3798 3797 3799 3800 CONECT 3799 3798 CONECT 3800 3794 3798 CONECT 3801 3795 CONECT 3802 3797 CONECT 3803 3794 3804 3807 CONECT 3804 3803 3805 CONECT 3805 3804 3806 3808 CONECT 3806 3805 3807 3809 CONECT 3807 3803 3806 CONECT 3808 3805 3814 CONECT 3809 3806 3810 CONECT 3810 3809 3811 CONECT 3811 3780 3810 3812 3813 CONECT 3812 3811 CONECT 3813 3811 CONECT 3814 3808 MASTER 329 0 2 12 20 0 0 6 4313 6 44 38 END