HEADER TRANSFERASE 12-NOV-08 3F8K TITLE CRYSTAL STRUCTURE OF PROTEIN ACETYLTRANSFERASE (PAT) FROM SULFOLOBUS TITLE 2 SOLFATARICUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN ACETYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS SOLFATARICUS P2; SOURCE 3 ORGANISM_TAXID: 273057; SOURCE 4 STRAIN: DSM 1617 / JCM 11322 / P2; SOURCE 5 ATCC: 35092; SOURCE 6 GENE: SSO2813; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS GCN5-RELATED N-ACETYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.M.BRENT REVDAT 5 27-DEC-23 3F8K 1 REMARK LINK REVDAT 4 01-NOV-17 3F8K 1 REMARK REVDAT 3 28-JUL-09 3F8K 1 JRNL REVDAT 2 09-JUN-09 3F8K 1 JRNL REVDAT 1 26-MAY-09 3F8K 0 JRNL AUTH M.M.BRENT,A.IWATA,J.CARTEN,K.ZHAO,R.MARMORSTEIN JRNL TITL STRUCTURE AND BIOCHEMICAL CHARACTERIZATION OF PROTEIN JRNL TITL 2 ACETYLTRANSFERASE FROM SULFOLOBUS SOLFATARICUS. JRNL REF J.BIOL.CHEM. V. 284 19412 2009 JRNL REFN ISSN 0021-9258 JRNL PMID 19473964 JRNL DOI 10.1074/JBC.M109.014951 REMARK 2 REMARK 2 RESOLUTION. 1.84 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.84 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 22938 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 2152 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1053 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 48 REMARK 3 SOLVENT ATOMS : 73 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.82400 REMARK 3 B22 (A**2) : -0.11300 REMARK 3 B33 (A**2) : -1.71100 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.070 REMARK 3 BOND ANGLES (DEGREES) : 1.900 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.404 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.170 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.540 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.510 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : 0.42 REMARK 3 BSOL : 68.10 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE FRIEDEL PAIRS WERE USED IN PHASING REMARK 4 REMARK 4 3F8K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-NOV-08. REMARK 100 THE DEPOSITION ID IS D_1000050281. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-JUL-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97932, 0.97945, 0.94932 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL CRYO-COOLED REMARK 200 SI(111) REMARK 200 OPTICS : ADJUSTABLE FOCUS K-B PAIR SI REMARK 200 PLUS PT, RH COATINGS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23521 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.840 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.84 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.42300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: THE STRUCTURE FACTOR FILE CONTAINS FRIEDEL PAIRS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% PEG 20000, 0.05M MES PH 6.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 300K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.35050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 34.31200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.37500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 34.31200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.35050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 23.37500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 ASN A 2 REMARK 465 ASP A 3 REMARK 465 GLN A 4 REMARK 465 GLU A 43 REMARK 465 ASP A 44 REMARK 465 ALA A 45 REMARK 465 LYS A 46 REMARK 465 LYS A 47 REMARK 465 ILE A 48 REMARK 465 ALA A 49 REMARK 465 SER A 50 REMARK 465 ASN A 51 REMARK 465 GLU A 52 REMARK 465 GLU A 147 REMARK 465 ARG A 148 REMARK 465 GLU A 149 REMARK 465 LEU A 150 REMARK 465 ASN A 151 REMARK 465 VAL A 152 REMARK 465 ASN A 153 REMARK 465 LEU A 154 REMARK 465 ALA A 155 REMARK 465 THR A 156 REMARK 465 PHE A 157 REMARK 465 SER A 158 REMARK 465 ALA A 159 REMARK 465 PRO A 160 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 5 CG1 CG2 CD1 REMARK 470 LYS A 6 CG CD CE NZ REMARK 470 LYS A 12 CG CD CE NZ REMARK 470 GLU A 16 CG CD OE1 OE2 REMARK 470 GLU A 42 CA C O CB CG CD OE1 REMARK 470 GLU A 42 OE2 REMARK 470 ASP A 53 CG OD1 OD2 REMARK 470 LYS A 73 CG CD CE NZ REMARK 470 LYS A 131 CG CD CE NZ REMARK 470 ARG A 144 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 62 -103.38 79.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE COA A 301 DBREF 3F8K A 1 160 UNP Q97V23 Q97V23_SULSO 1 160 SEQRES 1 A 160 MSE ASN ASP GLN ILE LYS ILE ARG LYS ALA THR LYS GLU SEQRES 2 A 160 ASP TRP GLU LYS ILE TYR GLN LEU TYR ASN SER LEU SER SEQRES 3 A 160 ASP GLU ASP LEU TYR LEU ARG PHE PHE HIS LEU TYR ARG SEQRES 4 A 160 ILE THR GLU GLU ASP ALA LYS LYS ILE ALA SER ASN GLU SEQRES 5 A 160 ASP HIS VAL THR PHE LEU ALA GLU VAL ASP GLY LYS VAL SEQRES 6 A 160 VAL GLY GLU ALA SER LEU HIS LYS ASP GLY GLU PHE SER SEQRES 7 A 160 LEU VAL VAL HIS ARG ASN TYR ARG THR LEU GLY ILE GLY SEQRES 8 A 160 THR LEU LEU VAL LYS THR LEU ILE GLU GLU ALA LYS LYS SEQRES 9 A 160 SER GLY LEU SER THR VAL LYS PHE TYR THR LEU PRO GLU SEQRES 10 A 160 ASN THR PRO MSE ILE LYS ILE GLY ARG LYS LEU GLY PHE SEQRES 11 A 160 LYS MSE ARG PHE TYR GLU ASP GLU VAL TYR GLY GLU MSE SEQRES 12 A 160 ARG LEU THR GLU ARG GLU LEU ASN VAL ASN LEU ALA THR SEQRES 13 A 160 PHE SER ALA PRO MODRES 3F8K MSE A 121 MET SELENOMETHIONINE MODRES 3F8K MSE A 132 MET SELENOMETHIONINE MODRES 3F8K MSE A 143 MET SELENOMETHIONINE HET MSE A 121 8 HET MSE A 132 8 HET MSE A 143 8 HET COA A 301 48 HETNAM MSE SELENOMETHIONINE HETNAM COA COENZYME A FORMUL 1 MSE 3(C5 H11 N O2 SE) FORMUL 2 COA C21 H36 N7 O16 P3 S FORMUL 3 HOH *73(H2 O) HELIX 1 1 THR A 11 GLU A 13 5 3 HELIX 2 2 ASP A 14 LEU A 25 1 12 HELIX 3 3 SER A 26 PHE A 34 1 9 HELIX 4 4 PHE A 34 ILE A 40 1 7 HELIX 5 5 ARG A 83 ARG A 86 5 4 HELIX 6 6 GLY A 89 SER A 105 1 17 HELIX 7 7 ASN A 118 GLY A 129 1 12 SHEET 1 A 4 LYS A 6 LYS A 9 0 SHEET 2 A 4 HIS A 54 VAL A 61 -1 O GLU A 60 N LYS A 6 SHEET 3 A 4 LYS A 64 HIS A 72 -1 O ALA A 69 N PHE A 57 SHEET 4 A 4 PHE A 77 VAL A 81 -1 O VAL A 80 N GLU A 68 SHEET 1 B 3 THR A 109 THR A 114 0 SHEET 2 B 3 VAL A 139 ARG A 144 -1 O VAL A 139 N THR A 114 SHEET 3 B 3 LYS A 131 PHE A 134 -1 N LYS A 131 O GLU A 142 LINK C PRO A 120 N MSE A 121 1555 1555 1.33 LINK C MSE A 121 N ILE A 122 1555 1555 1.33 LINK C LYS A 131 N MSE A 132 1555 1555 1.33 LINK C MSE A 132 N ARG A 133 1555 1555 1.33 LINK C GLU A 142 N MSE A 143 1555 1555 1.33 LINK C MSE A 143 N ARG A 144 1555 1555 1.33 SITE 1 AC1 24 LEU A 32 ASP A 62 LYS A 64 SER A 78 SITE 2 AC1 24 LEU A 79 VAL A 80 VAL A 81 ARG A 86 SITE 3 AC1 24 THR A 87 LEU A 88 GLY A 89 GLY A 91 SITE 4 AC1 24 THR A 92 TYR A 113 ASN A 118 PRO A 120 SITE 5 AC1 24 LYS A 123 ILE A 124 LYS A 127 HOH A 169 SITE 6 AC1 24 HOH A 171 HOH A 177 HOH A 180 HOH A 206 CRYST1 44.701 46.750 68.624 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022371 0.000000 0.000000 0.00000 SCALE2 0.000000 0.021390 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014572 0.00000