data_3F9S # _entry.id 3F9S # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3F9S pdb_00003f9s 10.2210/pdb3f9s/pdb RCSB RCSB050325 ? ? WWPDB D_1000050325 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 391571 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 3F9S _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2008-11-14 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of putative polyketide cyclase (AFE_2539) from ACIDITHIOBACILLUS FERROOXIDANS NCIB8455 at 1.76 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 3F9S _cell.length_a 50.970 _cell.length_b 48.594 _cell.length_c 55.967 _cell.angle_alpha 90.000 _cell.angle_beta 94.190 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3F9S _symmetry.Int_Tables_number 4 _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'putative polyketide cyclase' 16493.020 2 ? ? ? ? 2 non-polymer syn GLYCEROL 92.094 2 ? ? ? ? 3 water nat water 18.015 286 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;G(MSE)SISSKAKEILTQFTREVWSEGNIEASDKYIAPKYTVLHDPGDPWEGRELDVAGYKERVKTLRAAFPDQCFDIQG LFADGDAVV(MSE)TWLWTATHKEDIPGFPSTGKQIK(MSE)SGATVYYFDGNRLTGHWQITDRLGVYQQLRQAAAGA ; _entity_poly.pdbx_seq_one_letter_code_can ;GMSISSKAKEILTQFTREVWSEGNIEASDKYIAPKYTVLHDPGDPWEGRELDVAGYKERVKTLRAAFPDQCFDIQGLFAD GDAVVMTWLWTATHKEDIPGFPSTGKQIKMSGATVYYFDGNRLTGHWQITDRLGVYQQLRQAAAGA ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier 391571 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 MSE n 1 3 SER n 1 4 ILE n 1 5 SER n 1 6 SER n 1 7 LYS n 1 8 ALA n 1 9 LYS n 1 10 GLU n 1 11 ILE n 1 12 LEU n 1 13 THR n 1 14 GLN n 1 15 PHE n 1 16 THR n 1 17 ARG n 1 18 GLU n 1 19 VAL n 1 20 TRP n 1 21 SER n 1 22 GLU n 1 23 GLY n 1 24 ASN n 1 25 ILE n 1 26 GLU n 1 27 ALA n 1 28 SER n 1 29 ASP n 1 30 LYS n 1 31 TYR n 1 32 ILE n 1 33 ALA n 1 34 PRO n 1 35 LYS n 1 36 TYR n 1 37 THR n 1 38 VAL n 1 39 LEU n 1 40 HIS n 1 41 ASP n 1 42 PRO n 1 43 GLY n 1 44 ASP n 1 45 PRO n 1 46 TRP n 1 47 GLU n 1 48 GLY n 1 49 ARG n 1 50 GLU n 1 51 LEU n 1 52 ASP n 1 53 VAL n 1 54 ALA n 1 55 GLY n 1 56 TYR n 1 57 LYS n 1 58 GLU n 1 59 ARG n 1 60 VAL n 1 61 LYS n 1 62 THR n 1 63 LEU n 1 64 ARG n 1 65 ALA n 1 66 ALA n 1 67 PHE n 1 68 PRO n 1 69 ASP n 1 70 GLN n 1 71 CYS n 1 72 PHE n 1 73 ASP n 1 74 ILE n 1 75 GLN n 1 76 GLY n 1 77 LEU n 1 78 PHE n 1 79 ALA n 1 80 ASP n 1 81 GLY n 1 82 ASP n 1 83 ALA n 1 84 VAL n 1 85 VAL n 1 86 MSE n 1 87 THR n 1 88 TRP n 1 89 LEU n 1 90 TRP n 1 91 THR n 1 92 ALA n 1 93 THR n 1 94 HIS n 1 95 LYS n 1 96 GLU n 1 97 ASP n 1 98 ILE n 1 99 PRO n 1 100 GLY n 1 101 PHE n 1 102 PRO n 1 103 SER n 1 104 THR n 1 105 GLY n 1 106 LYS n 1 107 GLN n 1 108 ILE n 1 109 LYS n 1 110 MSE n 1 111 SER n 1 112 GLY n 1 113 ALA n 1 114 THR n 1 115 VAL n 1 116 TYR n 1 117 TYR n 1 118 PHE n 1 119 ASP n 1 120 GLY n 1 121 ASN n 1 122 ARG n 1 123 LEU n 1 124 THR n 1 125 GLY n 1 126 HIS n 1 127 TRP n 1 128 GLN n 1 129 ILE n 1 130 THR n 1 131 ASP n 1 132 ARG n 1 133 LEU n 1 134 GLY n 1 135 VAL n 1 136 TYR n 1 137 GLN n 1 138 GLN n 1 139 LEU n 1 140 ARG n 1 141 GLN n 1 142 ALA n 1 143 ALA n 1 144 ALA n 1 145 GLY n 1 146 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'ACIDITHIOBACILLUS FERROOXIDANS NCIB8455' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'AFE_2539, Lferr_0659' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'ATCC 23270' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Acidithiobacillus ferrooxidans' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 243159 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc 23270 _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code B5EMY1_ACIF5 _struct_ref.pdbx_db_accession B5EMY1 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MSISSKAKEILTQFTREVWSEGNIEASDKYIAPKYTVLHDPGDPWEGRELDVAGYKERVKTLRAAFPDQCFDIQGLFADG DAVVMTWLWTATHKEDIPGFPSTGKQIKMSGATVYYFDGNRLTGHWQITDRLGVYQQLRQAAAGA ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3F9S A 2 ? 146 ? B5EMY1 1 ? 145 ? 1 145 2 1 3F9S B 2 ? 146 ? B5EMY1 1 ? 145 ? 1 145 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3F9S GLY A 1 ? UNP B5EMY1 ? ? 'expression tag' 0 1 2 3F9S GLY B 1 ? UNP B5EMY1 ? ? 'expression tag' 0 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 3F9S # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.10 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 41.30 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 5.6 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details ;5.0000% Glycerol, 19.0000% iso-Propanol, 19.0000% PEG-4000, 0.1M Citrate pH 5.6, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K ; _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 300 mm CCD' _diffrn_detector.details 'Adjustable focusing mirrors in K-B geometry' _diffrn_detector.pdbx_collection_date 2008-10-12 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si(111) Double Crystal Monochrometer' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.94645 1.0 2 0.97967 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline 23-ID-B _diffrn_source.type 'APS BEAMLINE 23-ID-B' _diffrn_source.pdbx_wavelength_list 0.94645,0.97967 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site APS # _reflns.entry_id 3F9S _reflns.d_resolution_high 1.76 _reflns.d_resolution_low 30.429 _reflns.number_obs 26997 _reflns.pdbx_Rmerge_I_obs 0.117 _reflns.pdbx_netI_over_sigmaI 4.323 _reflns.pdbx_Rsym_value 0.117 _reflns.pdbx_redundancy 7.000 _reflns.percent_possible_obs 99.100 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.B_iso_Wilson_estimate 18.647 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.73 1.77 ? 7152 ? 0.441 1.7 0.441 ? 3.60 ? 1973 97.60 1 1 1.77 1.82 ? 11804 ? 0.469 1.5 0.469 ? 6.20 ? 1911 98.90 2 1 1.82 1.88 ? 13865 ? 0.410 1.8 0.410 ? 7.40 ? 1872 98.90 3 1 1.88 1.93 ? 13406 ? 0.318 2.2 0.318 ? 7.50 ? 1796 98.20 4 1 1.93 2.00 ? 13232 ? 0.274 2.4 0.274 ? 7.50 ? 1775 98.60 5 1 2.00 2.07 ? 12726 ? 0.230 3.0 0.230 ? 7.50 ? 1708 99.20 6 1 2.07 2.15 ? 12360 ? 0.205 3.3 0.205 ? 7.40 ? 1662 99.40 7 1 2.15 2.23 ? 11821 ? 0.188 3.7 0.188 ? 7.40 ? 1589 99.00 8 1 2.23 2.33 ? 11333 ? 0.167 4.0 0.167 ? 7.40 ? 1528 99.00 9 1 2.33 2.45 ? 10850 ? 0.157 4.3 0.157 ? 7.40 ? 1467 99.30 10 1 2.45 2.58 ? 10351 ? 0.133 5.1 0.133 ? 7.40 ? 1401 99.50 11 1 2.58 2.74 ? 9793 ? 0.120 5.4 0.120 ? 7.40 ? 1321 99.50 12 1 2.74 2.92 ? 9257 ? 0.109 5.9 0.109 ? 7.30 ? 1261 99.80 13 1 2.92 3.16 ? 8651 ? 0.095 6.4 0.095 ? 7.30 ? 1183 99.90 14 1 3.16 3.46 ? 7796 ? 0.084 7.2 0.084 ? 7.30 ? 1065 99.70 15 1 3.46 3.87 ? 7178 ? 0.074 7.7 0.074 ? 7.30 ? 980 99.90 16 1 3.87 4.47 ? 6201 ? 0.074 7.8 0.074 ? 7.30 ? 853 99.90 17 1 4.47 5.47 ? 5340 ? 0.078 7.3 0.078 ? 7.20 ? 744 99.90 18 1 5.47 7.74 ? 4087 ? 0.082 7.4 0.082 ? 7.00 ? 580 100.00 19 1 7.74 30.429 ? 2107 ? 0.080 6.0 0.080 ? 6.40 ? 328 98.40 20 1 # _refine.entry_id 3F9S _refine.ls_d_res_high 1.760 _refine.ls_d_res_low 30.429 _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 98.970 _refine.ls_number_reflns_obs 26993 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4. GOL MOLECULES FROM THE CRYSTALLIZATION SOLUTION ARE MODELED IN THE PUTATIVE ACTIVE SITE OF THE PROTEIN AND IT MAY REPRESENT THE SUBSTRATE OF THE PROTEIN. 5. THE N-TERMINUS OF CHAIN B SHOWS MULTIPLE ORDER. THIS HAS BEEN MODELED AS TWO CONFORMERS. FOR CONFORMER A, RESIDUES 3-6 HAVE BEEN MODELED WITH RESIDUES 0-2 OMITTED DUE TO DISORDER. FOR CONFORMER B, RESIDUES 1-6 HAVE BEEN MODELED WITH ONLY RESIDUE 0 OMITTED DUE TO DISORDER. ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.172 _refine.ls_R_factor_R_work 0.170 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.208 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 1358 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 29.434 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 0.110 _refine.aniso_B[2][2] 0.950 _refine.aniso_B[3][3] -1.160 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] -0.630 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.961 _refine.correlation_coeff_Fo_to_Fc_free 0.936 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.128 _refine.pdbx_overall_ESU_R_Free 0.120 _refine.overall_SU_ML 0.081 _refine.overall_SU_B 4.858 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 64.91 _refine.B_iso_min 13.51 _refine.occupancy_max 1.00 _refine.occupancy_min 0.38 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2263 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 12 _refine_hist.number_atoms_solvent 286 _refine_hist.number_atoms_total 2561 _refine_hist.d_res_high 1.760 _refine_hist.d_res_low 30.429 # loop_ _refine_ls_restr.type _refine_ls_restr.pdbx_refine_id _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 'X-RAY DIFFRACTION' 2413 0.015 0.022 ? ? r_bond_other_d 'X-RAY DIFFRACTION' 1651 0.003 0.020 ? ? r_angle_refined_deg 'X-RAY DIFFRACTION' 3280 1.793 1.935 ? ? r_angle_other_deg 'X-RAY DIFFRACTION' 4002 1.354 3.000 ? ? r_dihedral_angle_1_deg 'X-RAY DIFFRACTION' 301 4.325 5.000 ? ? r_dihedral_angle_2_deg 'X-RAY DIFFRACTION' 116 32.885 23.793 ? ? r_dihedral_angle_3_deg 'X-RAY DIFFRACTION' 397 9.963 15.000 ? ? r_dihedral_angle_4_deg 'X-RAY DIFFRACTION' 16 13.817 15.000 ? ? r_chiral_restr 'X-RAY DIFFRACTION' 345 0.099 0.200 ? ? r_gen_planes_refined 'X-RAY DIFFRACTION' 2713 0.007 0.020 ? ? r_gen_planes_other 'X-RAY DIFFRACTION' 517 0.003 0.020 ? ? r_nbd_refined 'X-RAY DIFFRACTION' 505 0.191 0.200 ? ? r_nbd_other 'X-RAY DIFFRACTION' 1879 0.164 0.200 ? ? r_nbtor_refined 'X-RAY DIFFRACTION' 1219 0.176 0.200 ? ? r_nbtor_other 'X-RAY DIFFRACTION' 1369 0.084 0.200 ? ? r_xyhbond_nbd_refined 'X-RAY DIFFRACTION' 340 0.115 0.200 ? ? r_symmetry_vdw_refined 'X-RAY DIFFRACTION' 11 0.104 0.200 ? ? r_symmetry_vdw_other 'X-RAY DIFFRACTION' 53 0.210 0.200 ? ? r_symmetry_hbond_refined 'X-RAY DIFFRACTION' 24 0.105 0.200 ? ? r_mcbond_it 'X-RAY DIFFRACTION' 1534 1.388 2.000 ? ? r_mcbond_other 'X-RAY DIFFRACTION' 597 0.237 2.000 ? ? r_mcangle_it 'X-RAY DIFFRACTION' 2344 1.941 4.000 ? ? r_scbond_it 'X-RAY DIFFRACTION' 1088 3.233 6.000 ? ? r_scangle_it 'X-RAY DIFFRACTION' 930 4.384 8.000 ? ? # _refine_ls_shell.d_res_high 1.760 _refine_ls_shell.d_res_low 1.806 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 95.610 _refine_ls_shell.number_reflns_R_work 1838 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.217 _refine_ls_shell.R_factor_R_free 0.232 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 99 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1937 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3F9S _struct.title 'Crystal structure of a putative polyketide cyclase (lferr_0659) from acidithiobacillus ferrooxidans atcc at 1.76 A resolution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text 'Structural genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, lyase' _struct_keywords.pdbx_keywords LYASE _struct_keywords.entry_id 3F9S # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? # _struct_biol.id 1 _struct_biol.details 'AUTHORS STATE THAT CRYSTAL PACKING ANALYSIS SUGGESTS THE ASSIGNMENT OF A DIMER AS THE SIGNIFICANT OLIGOMERIZATION STATE.' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LYS A 7 ? TRP A 20 ? LYS A 6 TRP A 19 1 ? 14 HELX_P HELX_P2 2 ASN A 24 ? GLU A 26 ? ASN A 23 GLU A 25 5 ? 3 HELX_P HELX_P3 3 ALA A 27 ? TYR A 31 ? ALA A 26 TYR A 30 1 ? 5 HELX_P HELX_P4 4 ASP A 52 ? PHE A 67 ? ASP A 51 PHE A 66 1 ? 16 HELX_P HELX_P5 5 ASP A 131 ? ALA A 143 ? ASP A 130 ALA A 142 1 ? 13 HELX_P HELX_P6 6 LYS B 7 ? TRP B 20 ? LYS B 6 TRP B 19 1 ? 14 HELX_P HELX_P7 7 ASN B 24 ? GLU B 26 ? ASN B 23 GLU B 25 5 ? 3 HELX_P HELX_P8 8 ALA B 27 ? TYR B 31 ? ALA B 26 TYR B 30 1 ? 5 HELX_P HELX_P9 9 ASP B 52 ? ALA B 65 ? ASP B 51 ALA B 64 1 ? 14 HELX_P HELX_P10 10 ASP B 131 ? ALA B 143 ? ASP B 130 ALA B 142 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GLY 1 C ? ? ? 1_555 A MSE 2 N ? ? A GLY 0 A MSE 1 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale2 covale both ? A MSE 2 C ? ? ? 1_555 A SER 3 N ? ? A MSE 1 A SER 2 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale3 covale both ? A VAL 85 C ? ? ? 1_555 A MSE 86 N ? ? A VAL 84 A MSE 85 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale4 covale both ? A MSE 86 C ? ? ? 1_555 A THR 87 N ? ? A MSE 85 A THR 86 1_555 ? ? ? ? ? ? ? 1.313 ? ? covale5 covale both ? A LYS 109 C ? ? ? 1_555 A MSE 110 N ? ? A LYS 108 A MSE 109 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale6 covale both ? A MSE 110 C ? ? ? 1_555 A SER 111 N ? ? A MSE 109 A SER 110 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale7 covale both ? B MSE 2 C B ? ? 1_555 B SER 3 N B ? B MSE 1 B SER 2 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale8 covale both ? B VAL 85 C ? ? ? 1_555 B MSE 86 N ? ? B VAL 84 B MSE 85 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale9 covale both ? B MSE 86 C ? ? ? 1_555 B THR 87 N ? ? B MSE 85 B THR 86 1_555 ? ? ? ? ? ? ? 1.319 ? ? covale10 covale both ? B LYS 109 C ? ? ? 1_555 B MSE 110 N ? ? B LYS 108 B MSE 109 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale11 covale both ? B MSE 110 C ? ? ? 1_555 B SER 111 N ? ? B MSE 109 B SER 110 1_555 ? ? ? ? ? ? ? 1.324 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 4 ? C ? 6 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? anti-parallel A 3 4 ? parallel A 4 5 ? anti-parallel B 1 2 ? parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? parallel C 3 4 ? anti-parallel C 4 5 ? anti-parallel C 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 SER A 3 ? ILE A 4 ? SER A 2 ILE A 3 A 2 GLN A 107 ? GLY A 120 ? GLN A 106 GLY A 119 A 3 ARG A 122 ? THR A 130 ? ARG A 121 THR A 129 A 4 ILE A 32 ? HIS A 40 ? ILE A 31 HIS A 39 A 5 GLU A 50 ? LEU A 51 ? GLU A 49 LEU A 50 B 1 SER A 3 ? ILE A 4 ? SER A 2 ILE A 3 B 2 GLN A 107 ? GLY A 120 ? GLN A 106 GLY A 119 B 3 ALA A 83 ? THR A 93 ? ALA A 82 THR A 92 B 4 CYS A 71 ? ASP A 80 ? CYS A 70 ASP A 79 C 1 GLU B 50 ? LEU B 51 ? GLU B 49 LEU B 50 C 2 ILE B 32 ? HIS B 40 ? ILE B 31 HIS B 39 C 3 ARG B 122 ? THR B 130 ? ARG B 121 THR B 129 C 4 GLN B 107 ? ASP B 119 ? GLN B 106 ASP B 118 C 5 ALA B 83 ? THR B 93 ? ALA B 82 THR B 92 C 6 CYS B 71 ? ASP B 80 ? CYS B 70 ASP B 79 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N SER A 3 ? N SER A 2 O GLY A 120 ? O GLY A 119 A 2 3 N VAL A 115 ? N VAL A 114 O TRP A 127 ? O TRP A 126 A 3 4 O GLN A 128 ? O GLN A 127 N HIS A 40 ? N HIS A 39 A 4 5 N TYR A 36 ? N TYR A 35 O LEU A 51 ? O LEU A 50 B 1 2 N SER A 3 ? N SER A 2 O GLY A 120 ? O GLY A 119 B 2 3 O ILE A 108 ? O ILE A 107 N ALA A 92 ? N ALA A 91 B 3 4 O THR A 87 ? O THR A 86 N GLN A 75 ? N GLN A 74 C 1 2 O LEU B 51 ? O LEU B 50 N TYR B 36 ? N TYR B 35 C 2 3 N HIS B 40 ? N HIS B 39 O GLN B 128 ? O GLN B 127 C 3 4 O TRP B 127 ? O TRP B 126 N VAL B 115 ? N VAL B 114 C 4 5 O ILE B 108 ? O ILE B 107 N ALA B 92 ? N ALA B 91 C 5 6 O ALA B 83 ? O ALA B 82 N ASP B 80 ? N ASP B 79 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A GOL 146 ? 6 'BINDING SITE FOR RESIDUE GOL A 146' AC2 Software B GOL 146 ? 9 'BINDING SITE FOR RESIDUE GOL B 146' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 TRP A 20 ? TRP A 19 . ? 1_555 ? 2 AC1 6 ARG A 59 ? ARG A 58 . ? 1_555 ? 3 AC1 6 TYR A 116 ? TYR A 115 . ? 1_555 ? 4 AC1 6 HIS A 126 ? HIS A 125 . ? 1_555 ? 5 AC1 6 GLN A 128 ? GLN A 127 . ? 1_555 ? 6 AC1 6 HOH E . ? HOH A 150 . ? 1_555 ? 7 AC2 9 TRP B 20 ? TRP B 19 . ? 1_555 ? 8 AC2 9 ARG B 59 ? ARG B 58 . ? 1_555 ? 9 AC2 9 THR B 114 ? THR B 113 . ? 1_555 ? 10 AC2 9 TYR B 116 ? TYR B 115 . ? 1_555 ? 11 AC2 9 HIS B 126 ? HIS B 125 . ? 1_555 ? 12 AC2 9 GLN B 128 ? GLN B 127 . ? 1_555 ? 13 AC2 9 HOH F . ? HOH B 165 . ? 1_555 ? 14 AC2 9 HOH F . ? HOH B 221 . ? 1_555 ? 15 AC2 9 HOH F . ? HOH B 253 . ? 1_555 ? # _atom_sites.entry_id 3F9S _atom_sites.fract_transf_matrix[1][1] 0.019619 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.001438 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020579 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.017916 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 0 GLY GLY A . n A 1 2 MSE 2 1 1 MSE MSE A . n A 1 3 SER 3 2 2 SER SER A . n A 1 4 ILE 4 3 3 ILE ILE A . n A 1 5 SER 5 4 4 SER SER A . n A 1 6 SER 6 5 5 SER SER A . n A 1 7 LYS 7 6 6 LYS LYS A . n A 1 8 ALA 8 7 7 ALA ALA A . n A 1 9 LYS 9 8 8 LYS LYS A . n A 1 10 GLU 10 9 9 GLU GLU A . n A 1 11 ILE 11 10 10 ILE ILE A . n A 1 12 LEU 12 11 11 LEU LEU A . n A 1 13 THR 13 12 12 THR THR A . n A 1 14 GLN 14 13 13 GLN GLN A . n A 1 15 PHE 15 14 14 PHE PHE A . n A 1 16 THR 16 15 15 THR THR A . n A 1 17 ARG 17 16 16 ARG ARG A . n A 1 18 GLU 18 17 17 GLU GLU A . n A 1 19 VAL 19 18 18 VAL VAL A . n A 1 20 TRP 20 19 19 TRP TRP A . n A 1 21 SER 21 20 20 SER SER A . n A 1 22 GLU 22 21 21 GLU GLU A . n A 1 23 GLY 23 22 22 GLY GLY A . n A 1 24 ASN 24 23 23 ASN ASN A . n A 1 25 ILE 25 24 24 ILE ILE A . n A 1 26 GLU 26 25 25 GLU GLU A . n A 1 27 ALA 27 26 26 ALA ALA A . n A 1 28 SER 28 27 27 SER SER A . n A 1 29 ASP 29 28 28 ASP ASP A . n A 1 30 LYS 30 29 29 LYS LYS A . n A 1 31 TYR 31 30 30 TYR TYR A . n A 1 32 ILE 32 31 31 ILE ILE A . n A 1 33 ALA 33 32 32 ALA ALA A . n A 1 34 PRO 34 33 33 PRO PRO A . n A 1 35 LYS 35 34 34 LYS LYS A . n A 1 36 TYR 36 35 35 TYR TYR A . n A 1 37 THR 37 36 36 THR THR A . n A 1 38 VAL 38 37 37 VAL VAL A . n A 1 39 LEU 39 38 38 LEU LEU A . n A 1 40 HIS 40 39 39 HIS HIS A . n A 1 41 ASP 41 40 40 ASP ASP A . n A 1 42 PRO 42 41 41 PRO PRO A . n A 1 43 GLY 43 42 42 GLY GLY A . n A 1 44 ASP 44 43 43 ASP ASP A . n A 1 45 PRO 45 44 44 PRO PRO A . n A 1 46 TRP 46 45 45 TRP TRP A . n A 1 47 GLU 47 46 46 GLU GLU A . n A 1 48 GLY 48 47 47 GLY GLY A . n A 1 49 ARG 49 48 48 ARG ARG A . n A 1 50 GLU 50 49 49 GLU GLU A . n A 1 51 LEU 51 50 50 LEU LEU A . n A 1 52 ASP 52 51 51 ASP ASP A . n A 1 53 VAL 53 52 52 VAL VAL A . n A 1 54 ALA 54 53 53 ALA ALA A . n A 1 55 GLY 55 54 54 GLY GLY A . n A 1 56 TYR 56 55 55 TYR TYR A . n A 1 57 LYS 57 56 56 LYS LYS A . n A 1 58 GLU 58 57 57 GLU GLU A . n A 1 59 ARG 59 58 58 ARG ARG A . n A 1 60 VAL 60 59 59 VAL VAL A . n A 1 61 LYS 61 60 60 LYS LYS A . n A 1 62 THR 62 61 61 THR THR A . n A 1 63 LEU 63 62 62 LEU LEU A . n A 1 64 ARG 64 63 63 ARG ARG A . n A 1 65 ALA 65 64 64 ALA ALA A . n A 1 66 ALA 66 65 65 ALA ALA A . n A 1 67 PHE 67 66 66 PHE PHE A . n A 1 68 PRO 68 67 67 PRO PRO A . n A 1 69 ASP 69 68 68 ASP ASP A . n A 1 70 GLN 70 69 69 GLN GLN A . n A 1 71 CYS 71 70 70 CYS CYS A . n A 1 72 PHE 72 71 71 PHE PHE A . n A 1 73 ASP 73 72 72 ASP ASP A . n A 1 74 ILE 74 73 73 ILE ILE A . n A 1 75 GLN 75 74 74 GLN GLN A . n A 1 76 GLY 76 75 75 GLY GLY A . n A 1 77 LEU 77 76 76 LEU LEU A . n A 1 78 PHE 78 77 77 PHE PHE A . n A 1 79 ALA 79 78 78 ALA ALA A . n A 1 80 ASP 80 79 79 ASP ASP A . n A 1 81 GLY 81 80 80 GLY GLY A . n A 1 82 ASP 82 81 81 ASP ASP A . n A 1 83 ALA 83 82 82 ALA ALA A . n A 1 84 VAL 84 83 83 VAL VAL A . n A 1 85 VAL 85 84 84 VAL VAL A . n A 1 86 MSE 86 85 85 MSE MSE A . n A 1 87 THR 87 86 86 THR THR A . n A 1 88 TRP 88 87 87 TRP TRP A . n A 1 89 LEU 89 88 88 LEU LEU A . n A 1 90 TRP 90 89 89 TRP TRP A . n A 1 91 THR 91 90 90 THR THR A . n A 1 92 ALA 92 91 91 ALA ALA A . n A 1 93 THR 93 92 92 THR THR A . n A 1 94 HIS 94 93 93 HIS HIS A . n A 1 95 LYS 95 94 94 LYS LYS A . n A 1 96 GLU 96 95 95 GLU GLU A . n A 1 97 ASP 97 96 96 ASP ASP A . n A 1 98 ILE 98 97 97 ILE ILE A . n A 1 99 PRO 99 98 98 PRO PRO A . n A 1 100 GLY 100 99 99 GLY GLY A . n A 1 101 PHE 101 100 100 PHE PHE A . n A 1 102 PRO 102 101 101 PRO PRO A . n A 1 103 SER 103 102 102 SER SER A . n A 1 104 THR 104 103 103 THR THR A . n A 1 105 GLY 105 104 104 GLY GLY A . n A 1 106 LYS 106 105 105 LYS LYS A . n A 1 107 GLN 107 106 106 GLN GLN A . n A 1 108 ILE 108 107 107 ILE ILE A . n A 1 109 LYS 109 108 108 LYS LYS A . n A 1 110 MSE 110 109 109 MSE MSE A . n A 1 111 SER 111 110 110 SER SER A . n A 1 112 GLY 112 111 111 GLY GLY A . n A 1 113 ALA 113 112 112 ALA ALA A . n A 1 114 THR 114 113 113 THR THR A . n A 1 115 VAL 115 114 114 VAL VAL A . n A 1 116 TYR 116 115 115 TYR TYR A . n A 1 117 TYR 117 116 116 TYR TYR A . n A 1 118 PHE 118 117 117 PHE PHE A . n A 1 119 ASP 119 118 118 ASP ASP A . n A 1 120 GLY 120 119 119 GLY GLY A . n A 1 121 ASN 121 120 120 ASN ASN A . n A 1 122 ARG 122 121 121 ARG ARG A . n A 1 123 LEU 123 122 122 LEU LEU A . n A 1 124 THR 124 123 123 THR THR A . n A 1 125 GLY 125 124 124 GLY GLY A . n A 1 126 HIS 126 125 125 HIS HIS A . n A 1 127 TRP 127 126 126 TRP TRP A . n A 1 128 GLN 128 127 127 GLN GLN A . n A 1 129 ILE 129 128 128 ILE ILE A . n A 1 130 THR 130 129 129 THR THR A . n A 1 131 ASP 131 130 130 ASP ASP A . n A 1 132 ARG 132 131 131 ARG ARG A . n A 1 133 LEU 133 132 132 LEU LEU A . n A 1 134 GLY 134 133 133 GLY GLY A . n A 1 135 VAL 135 134 134 VAL VAL A . n A 1 136 TYR 136 135 135 TYR TYR A . n A 1 137 GLN 137 136 136 GLN GLN A . n A 1 138 GLN 138 137 137 GLN GLN A . n A 1 139 LEU 139 138 138 LEU LEU A . n A 1 140 ARG 140 139 139 ARG ARG A . n A 1 141 GLN 141 140 140 GLN GLN A . n A 1 142 ALA 142 141 141 ALA ALA A . n A 1 143 ALA 143 142 142 ALA ALA A . n A 1 144 ALA 144 143 ? ? ? A . n A 1 145 GLY 145 144 ? ? ? A . n A 1 146 ALA 146 145 ? ? ? A . n B 1 1 GLY 1 0 ? ? ? B . n B 1 2 MSE 2 1 1 MSE MSE B . n B 1 3 SER 3 2 2 SER SER B . n B 1 4 ILE 4 3 3 ILE ILE B . n B 1 5 SER 5 4 4 SER SER B . n B 1 6 SER 6 5 5 SER SER B . n B 1 7 LYS 7 6 6 LYS LYS B . n B 1 8 ALA 8 7 7 ALA ALA B . n B 1 9 LYS 9 8 8 LYS LYS B . n B 1 10 GLU 10 9 9 GLU GLU B . n B 1 11 ILE 11 10 10 ILE ILE B . n B 1 12 LEU 12 11 11 LEU LEU B . n B 1 13 THR 13 12 12 THR THR B . n B 1 14 GLN 14 13 13 GLN GLN B . n B 1 15 PHE 15 14 14 PHE PHE B . n B 1 16 THR 16 15 15 THR THR B . n B 1 17 ARG 17 16 16 ARG ARG B . n B 1 18 GLU 18 17 17 GLU GLU B . n B 1 19 VAL 19 18 18 VAL VAL B . n B 1 20 TRP 20 19 19 TRP TRP B . n B 1 21 SER 21 20 20 SER SER B . n B 1 22 GLU 22 21 21 GLU GLU B . n B 1 23 GLY 23 22 22 GLY GLY B . n B 1 24 ASN 24 23 23 ASN ASN B . n B 1 25 ILE 25 24 24 ILE ILE B . n B 1 26 GLU 26 25 25 GLU GLU B . n B 1 27 ALA 27 26 26 ALA ALA B . n B 1 28 SER 28 27 27 SER SER B . n B 1 29 ASP 29 28 28 ASP ASP B . n B 1 30 LYS 30 29 29 LYS LYS B . n B 1 31 TYR 31 30 30 TYR TYR B . n B 1 32 ILE 32 31 31 ILE ILE B . n B 1 33 ALA 33 32 32 ALA ALA B . n B 1 34 PRO 34 33 33 PRO PRO B . n B 1 35 LYS 35 34 34 LYS LYS B . n B 1 36 TYR 36 35 35 TYR TYR B . n B 1 37 THR 37 36 36 THR THR B . n B 1 38 VAL 38 37 37 VAL VAL B . n B 1 39 LEU 39 38 38 LEU LEU B . n B 1 40 HIS 40 39 39 HIS HIS B . n B 1 41 ASP 41 40 40 ASP ASP B . n B 1 42 PRO 42 41 41 PRO PRO B . n B 1 43 GLY 43 42 42 GLY GLY B . n B 1 44 ASP 44 43 43 ASP ASP B . n B 1 45 PRO 45 44 44 PRO PRO B . n B 1 46 TRP 46 45 45 TRP TRP B . n B 1 47 GLU 47 46 46 GLU GLU B . n B 1 48 GLY 48 47 47 GLY GLY B . n B 1 49 ARG 49 48 48 ARG ARG B . n B 1 50 GLU 50 49 49 GLU GLU B . n B 1 51 LEU 51 50 50 LEU LEU B . n B 1 52 ASP 52 51 51 ASP ASP B . n B 1 53 VAL 53 52 52 VAL VAL B . n B 1 54 ALA 54 53 53 ALA ALA B . n B 1 55 GLY 55 54 54 GLY GLY B . n B 1 56 TYR 56 55 55 TYR TYR B . n B 1 57 LYS 57 56 56 LYS LYS B . n B 1 58 GLU 58 57 57 GLU GLU B . n B 1 59 ARG 59 58 58 ARG ARG B . n B 1 60 VAL 60 59 59 VAL VAL B . n B 1 61 LYS 61 60 60 LYS LYS B . n B 1 62 THR 62 61 61 THR THR B . n B 1 63 LEU 63 62 62 LEU LEU B . n B 1 64 ARG 64 63 63 ARG ARG B . n B 1 65 ALA 65 64 64 ALA ALA B . n B 1 66 ALA 66 65 65 ALA ALA B . n B 1 67 PHE 67 66 66 PHE PHE B . n B 1 68 PRO 68 67 67 PRO PRO B . n B 1 69 ASP 69 68 68 ASP ASP B . n B 1 70 GLN 70 69 69 GLN GLN B . n B 1 71 CYS 71 70 70 CYS CYS B . n B 1 72 PHE 72 71 71 PHE PHE B . n B 1 73 ASP 73 72 72 ASP ASP B . n B 1 74 ILE 74 73 73 ILE ILE B . n B 1 75 GLN 75 74 74 GLN GLN B . n B 1 76 GLY 76 75 75 GLY GLY B . n B 1 77 LEU 77 76 76 LEU LEU B . n B 1 78 PHE 78 77 77 PHE PHE B . n B 1 79 ALA 79 78 78 ALA ALA B . n B 1 80 ASP 80 79 79 ASP ASP B . n B 1 81 GLY 81 80 80 GLY GLY B . n B 1 82 ASP 82 81 81 ASP ASP B . n B 1 83 ALA 83 82 82 ALA ALA B . n B 1 84 VAL 84 83 83 VAL VAL B . n B 1 85 VAL 85 84 84 VAL VAL B . n B 1 86 MSE 86 85 85 MSE MSE B . n B 1 87 THR 87 86 86 THR THR B . n B 1 88 TRP 88 87 87 TRP TRP B . n B 1 89 LEU 89 88 88 LEU LEU B . n B 1 90 TRP 90 89 89 TRP TRP B . n B 1 91 THR 91 90 90 THR THR B . n B 1 92 ALA 92 91 91 ALA ALA B . n B 1 93 THR 93 92 92 THR THR B . n B 1 94 HIS 94 93 93 HIS HIS B . n B 1 95 LYS 95 94 94 LYS LYS B . n B 1 96 GLU 96 95 95 GLU GLU B . n B 1 97 ASP 97 96 96 ASP ASP B . n B 1 98 ILE 98 97 97 ILE ILE B . n B 1 99 PRO 99 98 98 PRO PRO B . n B 1 100 GLY 100 99 99 GLY GLY B . n B 1 101 PHE 101 100 100 PHE PHE B . n B 1 102 PRO 102 101 101 PRO PRO B . n B 1 103 SER 103 102 102 SER SER B . n B 1 104 THR 104 103 103 THR THR B . n B 1 105 GLY 105 104 104 GLY GLY B . n B 1 106 LYS 106 105 105 LYS LYS B . n B 1 107 GLN 107 106 106 GLN GLN B . n B 1 108 ILE 108 107 107 ILE ILE B . n B 1 109 LYS 109 108 108 LYS LYS B . n B 1 110 MSE 110 109 109 MSE MSE B . n B 1 111 SER 111 110 110 SER SER B . n B 1 112 GLY 112 111 111 GLY GLY B . n B 1 113 ALA 113 112 112 ALA ALA B . n B 1 114 THR 114 113 113 THR THR B . n B 1 115 VAL 115 114 114 VAL VAL B . n B 1 116 TYR 116 115 115 TYR TYR B . n B 1 117 TYR 117 116 116 TYR TYR B . n B 1 118 PHE 118 117 117 PHE PHE B . n B 1 119 ASP 119 118 118 ASP ASP B . n B 1 120 GLY 120 119 119 GLY GLY B . n B 1 121 ASN 121 120 120 ASN ASN B . n B 1 122 ARG 122 121 121 ARG ARG B . n B 1 123 LEU 123 122 122 LEU LEU B . n B 1 124 THR 124 123 123 THR THR B . n B 1 125 GLY 125 124 124 GLY GLY B . n B 1 126 HIS 126 125 125 HIS HIS B . n B 1 127 TRP 127 126 126 TRP TRP B . n B 1 128 GLN 128 127 127 GLN GLN B . n B 1 129 ILE 129 128 128 ILE ILE B . n B 1 130 THR 130 129 129 THR THR B . n B 1 131 ASP 131 130 130 ASP ASP B . n B 1 132 ARG 132 131 131 ARG ARG B . n B 1 133 LEU 133 132 132 LEU LEU B . n B 1 134 GLY 134 133 133 GLY GLY B . n B 1 135 VAL 135 134 134 VAL VAL B . n B 1 136 TYR 136 135 135 TYR TYR B . n B 1 137 GLN 137 136 136 GLN GLN B . n B 1 138 GLN 138 137 137 GLN GLN B . n B 1 139 LEU 139 138 138 LEU LEU B . n B 1 140 ARG 140 139 139 ARG ARG B . n B 1 141 GLN 141 140 140 GLN GLN B . n B 1 142 ALA 142 141 141 ALA ALA B . n B 1 143 ALA 143 142 142 ALA ALA B . n B 1 144 ALA 144 143 ? ? ? B . n B 1 145 GLY 145 144 ? ? ? B . n B 1 146 ALA 146 145 ? ? ? B . n # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL 1 146 1 GOL GOL A . D 2 GOL 1 146 2 GOL GOL B . E 3 HOH 1 147 3 HOH HOH A . E 3 HOH 2 148 148 HOH HOH A . E 3 HOH 3 149 6 HOH HOH A . E 3 HOH 4 150 5 HOH HOH A . E 3 HOH 5 151 143 HOH HOH A . E 3 HOH 6 152 152 HOH HOH A . E 3 HOH 7 153 144 HOH HOH A . E 3 HOH 8 154 154 HOH HOH A . E 3 HOH 9 155 155 HOH HOH A . E 3 HOH 10 156 156 HOH HOH A . E 3 HOH 11 157 12 HOH HOH A . E 3 HOH 12 158 17 HOH HOH A . E 3 HOH 13 159 22 HOH HOH A . E 3 HOH 14 160 23 HOH HOH A . E 3 HOH 15 161 161 HOH HOH A . E 3 HOH 16 162 25 HOH HOH A . E 3 HOH 17 163 29 HOH HOH A . E 3 HOH 18 164 164 HOH HOH A . E 3 HOH 19 165 165 HOH HOH A . E 3 HOH 20 166 33 HOH HOH A . E 3 HOH 21 167 34 HOH HOH A . E 3 HOH 22 168 168 HOH HOH A . E 3 HOH 23 169 38 HOH HOH A . E 3 HOH 24 170 170 HOH HOH A . E 3 HOH 25 171 171 HOH HOH A . E 3 HOH 26 172 172 HOH HOH A . E 3 HOH 27 173 173 HOH HOH A . E 3 HOH 28 174 174 HOH HOH A . E 3 HOH 29 175 175 HOH HOH A . E 3 HOH 30 176 176 HOH HOH A . E 3 HOH 31 177 39 HOH HOH A . E 3 HOH 32 178 42 HOH HOH A . E 3 HOH 33 179 43 HOH HOH A . E 3 HOH 34 180 50 HOH HOH A . E 3 HOH 35 181 181 HOH HOH A . E 3 HOH 36 182 53 HOH HOH A . E 3 HOH 37 183 54 HOH HOH A . E 3 HOH 38 184 55 HOH HOH A . E 3 HOH 39 185 56 HOH HOH A . E 3 HOH 40 186 57 HOH HOH A . E 3 HOH 41 187 59 HOH HOH A . E 3 HOH 42 188 62 HOH HOH A . E 3 HOH 43 189 189 HOH HOH A . E 3 HOH 44 190 63 HOH HOH A . E 3 HOH 45 191 191 HOH HOH A . E 3 HOH 46 193 193 HOH HOH A . E 3 HOH 47 194 194 HOH HOH A . E 3 HOH 48 195 195 HOH HOH A . E 3 HOH 49 196 196 HOH HOH A . E 3 HOH 50 197 197 HOH HOH A . E 3 HOH 51 198 198 HOH HOH A . E 3 HOH 52 205 205 HOH HOH A . E 3 HOH 53 206 206 HOH HOH A . E 3 HOH 54 207 207 HOH HOH A . E 3 HOH 55 208 208 HOH HOH A . E 3 HOH 56 211 211 HOH HOH A . E 3 HOH 57 212 212 HOH HOH A . E 3 HOH 58 215 215 HOH HOH A . E 3 HOH 59 216 216 HOH HOH A . E 3 HOH 60 219 219 HOH HOH A . E 3 HOH 61 223 223 HOH HOH A . E 3 HOH 62 225 225 HOH HOH A . E 3 HOH 63 227 227 HOH HOH A . E 3 HOH 64 230 230 HOH HOH A . E 3 HOH 65 233 233 HOH HOH A . E 3 HOH 66 236 236 HOH HOH A . E 3 HOH 67 237 237 HOH HOH A . E 3 HOH 68 240 240 HOH HOH A . E 3 HOH 69 242 242 HOH HOH A . E 3 HOH 70 244 244 HOH HOH A . E 3 HOH 71 245 245 HOH HOH A . E 3 HOH 72 247 247 HOH HOH A . E 3 HOH 73 248 248 HOH HOH A . E 3 HOH 74 249 249 HOH HOH A . E 3 HOH 75 252 252 HOH HOH A . E 3 HOH 76 254 254 HOH HOH A . E 3 HOH 77 255 255 HOH HOH A . E 3 HOH 78 257 257 HOH HOH A . E 3 HOH 79 265 265 HOH HOH A . E 3 HOH 80 267 267 HOH HOH A . E 3 HOH 81 268 268 HOH HOH A . E 3 HOH 82 269 269 HOH HOH A . E 3 HOH 83 272 272 HOH HOH A . E 3 HOH 84 273 273 HOH HOH A . E 3 HOH 85 275 275 HOH HOH A . E 3 HOH 86 277 277 HOH HOH A . E 3 HOH 87 279 279 HOH HOH A . E 3 HOH 88 285 285 HOH HOH A . E 3 HOH 89 286 286 HOH HOH A . E 3 HOH 90 287 287 HOH HOH A . E 3 HOH 91 288 288 HOH HOH A . E 3 HOH 92 291 71 HOH HOH A . E 3 HOH 93 292 72 HOH HOH A . E 3 HOH 94 293 73 HOH HOH A . E 3 HOH 95 294 74 HOH HOH A . E 3 HOH 96 296 76 HOH HOH A . E 3 HOH 97 298 78 HOH HOH A . E 3 HOH 98 300 80 HOH HOH A . E 3 HOH 99 307 87 HOH HOH A . E 3 HOH 100 308 88 HOH HOH A . E 3 HOH 101 311 91 HOH HOH A . E 3 HOH 102 315 95 HOH HOH A . E 3 HOH 103 316 96 HOH HOH A . E 3 HOH 104 318 98 HOH HOH A . E 3 HOH 105 321 101 HOH HOH A . E 3 HOH 106 322 102 HOH HOH A . E 3 HOH 107 324 104 HOH HOH A . E 3 HOH 108 327 107 HOH HOH A . E 3 HOH 109 328 108 HOH HOH A . E 3 HOH 110 329 109 HOH HOH A . E 3 HOH 111 330 110 HOH HOH A . E 3 HOH 112 331 111 HOH HOH A . E 3 HOH 113 334 114 HOH HOH A . E 3 HOH 114 336 116 HOH HOH A . E 3 HOH 115 337 117 HOH HOH A . E 3 HOH 116 338 118 HOH HOH A . E 3 HOH 117 339 119 HOH HOH A . E 3 HOH 118 340 120 HOH HOH A . E 3 HOH 119 341 121 HOH HOH A . E 3 HOH 120 344 124 HOH HOH A . E 3 HOH 121 345 125 HOH HOH A . E 3 HOH 122 346 126 HOH HOH A . E 3 HOH 123 347 127 HOH HOH A . E 3 HOH 124 349 129 HOH HOH A . E 3 HOH 125 350 130 HOH HOH A . E 3 HOH 126 351 131 HOH HOH A . E 3 HOH 127 352 132 HOH HOH A . E 3 HOH 128 356 136 HOH HOH A . E 3 HOH 129 358 138 HOH HOH A . E 3 HOH 130 359 139 HOH HOH A . E 3 HOH 131 361 141 HOH HOH A . E 3 HOH 132 362 142 HOH HOH A . F 3 HOH 1 147 147 HOH HOH B . F 3 HOH 2 149 4 HOH HOH B . F 3 HOH 3 150 150 HOH HOH B . F 3 HOH 4 151 151 HOH HOH B . F 3 HOH 5 152 7 HOH HOH B . F 3 HOH 6 153 153 HOH HOH B . F 3 HOH 7 154 8 HOH HOH B . F 3 HOH 8 155 9 HOH HOH B . F 3 HOH 9 156 10 HOH HOH B . F 3 HOH 10 157 157 HOH HOH B . F 3 HOH 11 158 158 HOH HOH B . F 3 HOH 12 159 159 HOH HOH B . F 3 HOH 13 160 160 HOH HOH B . F 3 HOH 14 161 11 HOH HOH B . F 3 HOH 15 162 162 HOH HOH B . F 3 HOH 16 163 163 HOH HOH B . F 3 HOH 17 164 149 HOH HOH B . F 3 HOH 18 165 13 HOH HOH B . F 3 HOH 19 166 166 HOH HOH B . F 3 HOH 20 167 167 HOH HOH B . F 3 HOH 21 168 14 HOH HOH B . F 3 HOH 22 169 169 HOH HOH B . F 3 HOH 23 170 15 HOH HOH B . F 3 HOH 24 171 16 HOH HOH B . F 3 HOH 25 173 18 HOH HOH B . F 3 HOH 26 174 19 HOH HOH B . F 3 HOH 27 175 20 HOH HOH B . F 3 HOH 28 176 21 HOH HOH B . F 3 HOH 29 177 177 HOH HOH B . F 3 HOH 30 178 178 HOH HOH B . F 3 HOH 31 179 179 HOH HOH B . F 3 HOH 32 180 180 HOH HOH B . F 3 HOH 33 182 182 HOH HOH B . F 3 HOH 34 183 183 HOH HOH B . F 3 HOH 35 184 184 HOH HOH B . F 3 HOH 36 185 185 HOH HOH B . F 3 HOH 37 186 186 HOH HOH B . F 3 HOH 38 187 187 HOH HOH B . F 3 HOH 39 188 188 HOH HOH B . F 3 HOH 40 190 190 HOH HOH B . F 3 HOH 41 192 192 HOH HOH B . F 3 HOH 42 193 24 HOH HOH B . F 3 HOH 43 195 26 HOH HOH B . F 3 HOH 44 196 27 HOH HOH B . F 3 HOH 45 197 28 HOH HOH B . F 3 HOH 46 199 199 HOH HOH B . F 3 HOH 47 200 200 HOH HOH B . F 3 HOH 48 201 201 HOH HOH B . F 3 HOH 49 202 202 HOH HOH B . F 3 HOH 50 203 203 HOH HOH B . F 3 HOH 51 204 204 HOH HOH B . F 3 HOH 52 205 30 HOH HOH B . F 3 HOH 53 206 31 HOH HOH B . F 3 HOH 54 207 32 HOH HOH B . F 3 HOH 55 209 209 HOH HOH B . F 3 HOH 56 210 210 HOH HOH B . F 3 HOH 57 212 35 HOH HOH B . F 3 HOH 58 213 213 HOH HOH B . F 3 HOH 59 214 214 HOH HOH B . F 3 HOH 60 215 36 HOH HOH B . F 3 HOH 61 216 37 HOH HOH B . F 3 HOH 62 217 217 HOH HOH B . F 3 HOH 63 218 218 HOH HOH B . F 3 HOH 64 220 220 HOH HOH B . F 3 HOH 65 221 221 HOH HOH B . F 3 HOH 66 222 222 HOH HOH B . F 3 HOH 67 224 224 HOH HOH B . F 3 HOH 68 225 40 HOH HOH B . F 3 HOH 69 226 226 HOH HOH B . F 3 HOH 70 227 41 HOH HOH B . F 3 HOH 71 228 228 HOH HOH B . F 3 HOH 72 229 229 HOH HOH B . F 3 HOH 73 231 231 HOH HOH B . F 3 HOH 74 232 232 HOH HOH B . F 3 HOH 75 234 234 HOH HOH B . F 3 HOH 76 235 235 HOH HOH B . F 3 HOH 77 236 44 HOH HOH B . F 3 HOH 78 237 45 HOH HOH B . F 3 HOH 79 238 238 HOH HOH B . F 3 HOH 80 239 239 HOH HOH B . F 3 HOH 81 241 241 HOH HOH B . F 3 HOH 82 242 46 HOH HOH B . F 3 HOH 83 243 243 HOH HOH B . F 3 HOH 84 244 47 HOH HOH B . F 3 HOH 85 245 48 HOH HOH B . F 3 HOH 86 246 246 HOH HOH B . F 3 HOH 87 247 49 HOH HOH B . F 3 HOH 88 249 51 HOH HOH B . F 3 HOH 89 250 250 HOH HOH B . F 3 HOH 90 251 251 HOH HOH B . F 3 HOH 91 252 52 HOH HOH B . F 3 HOH 92 253 253 HOH HOH B . F 3 HOH 93 256 256 HOH HOH B . F 3 HOH 94 258 258 HOH HOH B . F 3 HOH 95 259 259 HOH HOH B . F 3 HOH 96 260 260 HOH HOH B . F 3 HOH 97 261 261 HOH HOH B . F 3 HOH 98 262 262 HOH HOH B . F 3 HOH 99 263 263 HOH HOH B . F 3 HOH 100 264 264 HOH HOH B . F 3 HOH 101 266 266 HOH HOH B . F 3 HOH 102 268 58 HOH HOH B . F 3 HOH 103 270 270 HOH HOH B . F 3 HOH 104 271 271 HOH HOH B . F 3 HOH 105 272 60 HOH HOH B . F 3 HOH 106 273 61 HOH HOH B . F 3 HOH 107 274 274 HOH HOH B . F 3 HOH 108 276 276 HOH HOH B . F 3 HOH 109 278 278 HOH HOH B . F 3 HOH 110 279 64 HOH HOH B . F 3 HOH 111 280 280 HOH HOH B . F 3 HOH 112 281 281 HOH HOH B . F 3 HOH 113 282 282 HOH HOH B . F 3 HOH 114 283 283 HOH HOH B . F 3 HOH 115 284 284 HOH HOH B . F 3 HOH 116 285 65 HOH HOH B . F 3 HOH 117 286 66 HOH HOH B . F 3 HOH 118 287 67 HOH HOH B . F 3 HOH 119 288 68 HOH HOH B . F 3 HOH 120 289 69 HOH HOH B . F 3 HOH 121 290 70 HOH HOH B . F 3 HOH 122 295 75 HOH HOH B . F 3 HOH 123 297 77 HOH HOH B . F 3 HOH 124 299 79 HOH HOH B . F 3 HOH 125 301 81 HOH HOH B . F 3 HOH 126 302 82 HOH HOH B . F 3 HOH 127 303 83 HOH HOH B . F 3 HOH 128 304 84 HOH HOH B . F 3 HOH 129 305 85 HOH HOH B . F 3 HOH 130 306 86 HOH HOH B . F 3 HOH 131 309 89 HOH HOH B . F 3 HOH 132 310 90 HOH HOH B . F 3 HOH 133 312 92 HOH HOH B . F 3 HOH 134 313 93 HOH HOH B . F 3 HOH 135 314 94 HOH HOH B . F 3 HOH 136 317 97 HOH HOH B . F 3 HOH 137 319 99 HOH HOH B . F 3 HOH 138 320 100 HOH HOH B . F 3 HOH 139 323 103 HOH HOH B . F 3 HOH 140 325 105 HOH HOH B . F 3 HOH 141 326 106 HOH HOH B . F 3 HOH 142 332 112 HOH HOH B . F 3 HOH 143 333 113 HOH HOH B . F 3 HOH 144 335 115 HOH HOH B . F 3 HOH 145 342 122 HOH HOH B . F 3 HOH 146 343 123 HOH HOH B . F 3 HOH 147 348 128 HOH HOH B . F 3 HOH 148 353 133 HOH HOH B . F 3 HOH 149 354 134 HOH HOH B . F 3 HOH 150 355 135 HOH HOH B . F 3 HOH 151 357 137 HOH HOH B . F 3 HOH 152 360 140 HOH HOH B . F 3 HOH 153 363 145 HOH HOH B . F 3 HOH 154 364 146 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 2 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 86 A MSE 85 ? MET SELENOMETHIONINE 3 A MSE 110 A MSE 109 ? MET SELENOMETHIONINE 4 B MSE 2 B MSE 1 ? MET SELENOMETHIONINE 5 B MSE 86 B MSE 85 ? MET SELENOMETHIONINE 6 B MSE 110 B MSE 109 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2530 ? 1 MORE -12 ? 1 'SSA (A^2)' 12670 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-11-25 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2014-04-02 4 'Structure model' 1 3 2017-11-01 5 'Structure model' 1 4 2019-07-24 6 'Structure model' 1 5 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Source and taxonomy' 4 4 'Structure model' 'Refinement description' 5 5 'Structure model' 'Data collection' 6 5 'Structure model' 'Derived calculations' 7 5 'Structure model' 'Refinement description' 8 6 'Structure model' 'Database references' 9 6 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' software 3 5 'Structure model' struct_conn 4 6 'Structure model' database_2 5 6 'Structure model' struct_ref_seq_dif 6 6 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.classification' 2 4 'Structure model' '_software.name' 3 5 'Structure model' '_software.classification' 4 5 'Structure model' '_software.contact_author' 5 5 'Structure model' '_software.contact_author_email' 6 5 'Structure model' '_software.language' 7 5 'Structure model' '_software.location' 8 5 'Structure model' '_software.name' 9 5 'Structure model' '_software.type' 10 5 'Structure model' '_software.version' 11 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 12 6 'Structure model' '_database_2.pdbx_DOI' 13 6 'Structure model' '_database_2.pdbx_database_accession' 14 6 'Structure model' '_struct_ref_seq_dif.details' 15 6 'Structure model' '_struct_site.pdbx_auth_asym_id' 16 6 'Structure model' '_struct_site.pdbx_auth_comp_id' 17 6 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.pdbx_refine_id 1 ? refined 11.9510 18.2560 34.3810 -0.1472 -0.1020 -0.0583 0.0233 -0.0316 -0.0177 1.7162 1.3748 1.3603 -0.0282 -0.0472 -0.1689 0.0760 -0.0299 -0.0462 0.0377 -0.2555 -0.1395 0.0289 0.1140 0.1900 'X-RAY DIFFRACTION' 2 ? refined -8.4480 19.0250 47.7070 -0.1276 -0.0842 -0.1156 -0.0137 -0.0107 0.0162 0.6719 0.6829 1.1095 -0.2087 0.2309 0.0046 0.0125 -0.0070 -0.0056 -0.1249 -0.0669 0.0612 0.1405 0.0063 -0.1506 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.selection 0 1 1 A A 142 . . . . 'X-RAY DIFFRACTION' ? ? 6 2 2 B B 142 . . . . 'X-RAY DIFFRACTION' ? ? # _phasing.method MAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.2.0019 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 1 PHENIX . ? package 'P.D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 2 SHELX . ? package 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 3 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 4 SCALA 3.2.5 5/04/2004 other 'Phil R. Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' http://www.ccp4.ac.uk/dist/html/scala.html Fortran_77 ? 5 PDB_EXTRACT 3.006 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 MOSFLM . ? ? ? ? 'data reduction' ? ? ? 7 SHELXD . ? ? ? ? phasing ? ? ? 8 autoSHARP . ? ? ? ? phasing ? ? ? 9 # _pdbx_entry_details.entry_id 3F9S _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. ; _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 NE _pdbx_validate_rmsd_angle.auth_asym_id_1 B _pdbx_validate_rmsd_angle.auth_comp_id_1 ARG _pdbx_validate_rmsd_angle.auth_seq_id_1 16 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CZ _pdbx_validate_rmsd_angle.auth_asym_id_2 B _pdbx_validate_rmsd_angle.auth_comp_id_2 ARG _pdbx_validate_rmsd_angle.auth_seq_id_2 16 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 NH1 _pdbx_validate_rmsd_angle.auth_asym_id_3 B _pdbx_validate_rmsd_angle.auth_comp_id_3 ARG _pdbx_validate_rmsd_angle.auth_seq_id_3 16 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 123.74 _pdbx_validate_rmsd_angle.angle_target_value 120.30 _pdbx_validate_rmsd_angle.angle_deviation 3.44 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.50 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 2 ? ? 68.35 -176.38 2 1 ASP A 40 ? ? -174.76 80.77 3 1 PRO A 98 ? ? -49.05 109.66 4 1 SER A 102 ? ? -32.82 109.23 5 1 ASP B 40 ? ? -172.42 82.59 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 34 ? CD ? A LYS 35 CD 2 1 Y 1 A LYS 34 ? CE ? A LYS 35 CE 3 1 Y 1 A LYS 34 ? NZ ? A LYS 35 NZ 4 1 Y 1 A LYS 105 ? CG ? A LYS 106 CG 5 1 Y 1 A LYS 105 ? CD ? A LYS 106 CD 6 1 Y 1 A LYS 105 ? CE ? A LYS 106 CE 7 1 Y 1 A LYS 105 ? NZ ? A LYS 106 NZ 8 1 Y 1 B GLN 140 ? CG ? B GLN 141 CG 9 1 Y 1 B GLN 140 ? CD ? B GLN 141 CD 10 1 Y 1 B GLN 140 ? OE1 ? B GLN 141 OE1 11 1 Y 1 B GLN 140 ? NE2 ? B GLN 141 NE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ALA 143 ? A ALA 144 2 1 Y 1 A GLY 144 ? A GLY 145 3 1 Y 1 A ALA 145 ? A ALA 146 4 1 Y 1 B GLY 0 ? B GLY 1 5 1 Y 1 B ALA 143 ? B ALA 144 6 1 Y 1 B GLY 144 ? B GLY 145 7 1 Y 1 B ALA 145 ? B ALA 146 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 GLYCEROL GOL 3 water HOH #