HEADER LYASE 14-NOV-08 3F9S TITLE CRYSTAL STRUCTURE OF A PUTATIVE POLYKETIDE CYCLASE (LFERR_0659) FROM TITLE 2 ACIDITHIOBACILLUS FERROOXIDANS ATCC AT 1.76 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE POLYKETIDE CYCLASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACIDITHIOBACILLUS FERROOXIDANS; SOURCE 3 ORGANISM_COMMON: ACIDITHIOBACILLUS FERROOXIDANS NCIB8455; SOURCE 4 ORGANISM_TAXID: 243159; SOURCE 5 STRAIN: ATCC 23270; SOURCE 6 ATCC: 23270; SOURCE 7 GENE: AFE_2539, LFERR_0659; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, PSI-2, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 9 27-NOV-24 3F9S 1 REMARK REVDAT 8 01-FEB-23 3F9S 1 REMARK SEQADV REVDAT 7 24-JUL-19 3F9S 1 REMARK LINK REVDAT 6 01-NOV-17 3F9S 1 REMARK REVDAT 5 02-APR-14 3F9S 1 SOURCE REVDAT 4 13-JUL-11 3F9S 1 VERSN REVDAT 3 23-MAR-11 3F9S 1 HEADER TITLE KEYWDS REVDAT 2 24-FEB-09 3F9S 1 VERSN REVDAT 1 25-NOV-08 3F9S 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE POLYKETIDE CYCLASE (AFE_2539) JRNL TITL 2 FROM ACIDITHIOBACILLUS FERROOXIDANS NCIB8455 AT 1.76 A JRNL TITL 3 RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.76 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.76 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.43 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 26993 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1358 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.76 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.81 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1838 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.61 REMARK 3 BIN R VALUE (WORKING SET) : 0.2170 REMARK 3 BIN FREE R VALUE SET COUNT : 99 REMARK 3 BIN FREE R VALUE : 0.2320 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2263 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 286 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 18.65 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.11000 REMARK 3 B22 (A**2) : 0.95000 REMARK 3 B33 (A**2) : -1.16000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.63000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.128 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.120 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.081 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.858 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2413 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1651 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3280 ; 1.793 ; 1.935 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4002 ; 1.354 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 301 ; 4.325 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 116 ;32.885 ;23.793 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 397 ; 9.963 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;13.817 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 345 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2713 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 517 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 505 ; 0.191 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1879 ; 0.164 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1219 ; 0.176 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1369 ; 0.084 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 340 ; 0.115 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 11 ; 0.104 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 53 ; 0.210 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 24 ; 0.105 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1534 ; 1.388 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 597 ; 0.237 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2344 ; 1.941 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1088 ; 3.233 ; 6.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 930 ; 4.384 ; 8.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 142 REMARK 3 ORIGIN FOR THE GROUP (A): 11.9510 18.2560 34.3810 REMARK 3 T TENSOR REMARK 3 T11: -0.1472 T22: -0.1020 REMARK 3 T33: -0.0583 T12: 0.0233 REMARK 3 T13: -0.0316 T23: -0.0177 REMARK 3 L TENSOR REMARK 3 L11: 1.7162 L22: 1.3748 REMARK 3 L33: 1.3603 L12: -0.0282 REMARK 3 L13: -0.0472 L23: -0.1689 REMARK 3 S TENSOR REMARK 3 S11: 0.0760 S12: 0.0377 S13: -0.2555 REMARK 3 S21: 0.0289 S22: -0.0299 S23: -0.1395 REMARK 3 S31: 0.1140 S32: 0.1900 S33: -0.0462 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 6 B 142 REMARK 3 ORIGIN FOR THE GROUP (A): -8.4480 19.0250 47.7070 REMARK 3 T TENSOR REMARK 3 T11: -0.1276 T22: -0.0842 REMARK 3 T33: -0.1156 T12: -0.0137 REMARK 3 T13: -0.0107 T23: 0.0162 REMARK 3 L TENSOR REMARK 3 L11: 0.6719 L22: 0.6829 REMARK 3 L33: 1.1095 L12: -0.2087 REMARK 3 L13: 0.2309 L23: 0.0046 REMARK 3 S TENSOR REMARK 3 S11: 0.0125 S12: -0.1249 S13: -0.0669 REMARK 3 S21: 0.1405 S22: -0.0070 S23: 0.0612 REMARK 3 S31: 0.0063 S32: -0.1506 S33: -0.0056 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. ATOM RECORDS CONTAIN RESIDUAL B FACTORS REMARK 3 ONLY. 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE REMARK 3 ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED REMARK 3 SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4. GOL REMARK 3 MOLECULES FROM THE CRYSTALLIZATION SOLUTION ARE MODELED IN THE REMARK 3 PUTATIVE ACTIVE SITE OF THE PROTEIN AND IT MAY REPRESENT THE REMARK 3 SUBSTRATE OF THE PROTEIN. 5. THE N-TERMINUS OF CHAIN B SHOWS REMARK 3 MULTIPLE ORDER. THIS HAS BEEN MODELED AS TWO CONFORMERS. FOR REMARK 3 CONFORMER A, RESIDUES 3-6 HAVE BEEN MODELED WITH RESIDUES 0-2 REMARK 3 OMITTED DUE TO DISORDER. FOR CONFORMER B, RESIDUES 1-6 HAVE BEEN REMARK 3 MODELED WITH ONLY RESIDUE 0 OMITTED DUE TO DISORDER. REMARK 4 REMARK 4 3F9S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-NOV-08. REMARK 100 THE DEPOSITION ID IS D_1000050325. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-OCT-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.94645,0.97967 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL REMARK 200 MONOCHROMETER REMARK 200 OPTICS : ADJUSTABLE FOCUSING MIRRORS IN K REMARK 200 -B GEOMETRY REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.2.5 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26997 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.760 REMARK 200 RESOLUTION RANGE LOW (A) : 30.429 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.11700 REMARK 200 R SYM (I) : 0.11700 REMARK 200 FOR THE DATA SET : 4.3230 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.73 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.77 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.44100 REMARK 200 R SYM FOR SHELL (I) : 0.44100 REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5.0000% GLYCEROL, 19.0000% ISO REMARK 280 -PROPANOL, 19.0000% PEG-4000, 0.1M CITRATE PH 5.6, NANODROP, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 24.29700 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT CRYSTAL PACKING ANALYSIS SUGGESTS THE REMARK 300 ASSIGNMENT OF A DIMER AS THE SIGNIFICANT OLIGOMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 143 REMARK 465 GLY A 144 REMARK 465 ALA A 145 REMARK 465 GLY B 0 REMARK 465 ALA B 143 REMARK 465 GLY B 144 REMARK 465 ALA B 145 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 34 CD CE NZ REMARK 470 LYS A 105 CG CD CE NZ REMARK 470 GLN B 140 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 16 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 2 -176.38 68.35 REMARK 500 ASP A 40 80.77 -174.76 REMARK 500 PRO A 98 109.66 -49.05 REMARK 500 SER A 102 109.23 -32.82 REMARK 500 ASP B 40 82.59 -172.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 146 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 146 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 391571 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3F9S A 1 145 UNP B5EMY1 B5EMY1_ACIF5 1 145 DBREF 3F9S B 1 145 UNP B5EMY1 B5EMY1_ACIF5 1 145 SEQADV 3F9S GLY A 0 UNP B5EMY1 EXPRESSION TAG SEQADV 3F9S GLY B 0 UNP B5EMY1 EXPRESSION TAG SEQRES 1 A 146 GLY MSE SER ILE SER SER LYS ALA LYS GLU ILE LEU THR SEQRES 2 A 146 GLN PHE THR ARG GLU VAL TRP SER GLU GLY ASN ILE GLU SEQRES 3 A 146 ALA SER ASP LYS TYR ILE ALA PRO LYS TYR THR VAL LEU SEQRES 4 A 146 HIS ASP PRO GLY ASP PRO TRP GLU GLY ARG GLU LEU ASP SEQRES 5 A 146 VAL ALA GLY TYR LYS GLU ARG VAL LYS THR LEU ARG ALA SEQRES 6 A 146 ALA PHE PRO ASP GLN CYS PHE ASP ILE GLN GLY LEU PHE SEQRES 7 A 146 ALA ASP GLY ASP ALA VAL VAL MSE THR TRP LEU TRP THR SEQRES 8 A 146 ALA THR HIS LYS GLU ASP ILE PRO GLY PHE PRO SER THR SEQRES 9 A 146 GLY LYS GLN ILE LYS MSE SER GLY ALA THR VAL TYR TYR SEQRES 10 A 146 PHE ASP GLY ASN ARG LEU THR GLY HIS TRP GLN ILE THR SEQRES 11 A 146 ASP ARG LEU GLY VAL TYR GLN GLN LEU ARG GLN ALA ALA SEQRES 12 A 146 ALA GLY ALA SEQRES 1 B 146 GLY MSE SER ILE SER SER LYS ALA LYS GLU ILE LEU THR SEQRES 2 B 146 GLN PHE THR ARG GLU VAL TRP SER GLU GLY ASN ILE GLU SEQRES 3 B 146 ALA SER ASP LYS TYR ILE ALA PRO LYS TYR THR VAL LEU SEQRES 4 B 146 HIS ASP PRO GLY ASP PRO TRP GLU GLY ARG GLU LEU ASP SEQRES 5 B 146 VAL ALA GLY TYR LYS GLU ARG VAL LYS THR LEU ARG ALA SEQRES 6 B 146 ALA PHE PRO ASP GLN CYS PHE ASP ILE GLN GLY LEU PHE SEQRES 7 B 146 ALA ASP GLY ASP ALA VAL VAL MSE THR TRP LEU TRP THR SEQRES 8 B 146 ALA THR HIS LYS GLU ASP ILE PRO GLY PHE PRO SER THR SEQRES 9 B 146 GLY LYS GLN ILE LYS MSE SER GLY ALA THR VAL TYR TYR SEQRES 10 B 146 PHE ASP GLY ASN ARG LEU THR GLY HIS TRP GLN ILE THR SEQRES 11 B 146 ASP ARG LEU GLY VAL TYR GLN GLN LEU ARG GLN ALA ALA SEQRES 12 B 146 ALA GLY ALA MODRES 3F9S MSE A 1 MET SELENOMETHIONINE MODRES 3F9S MSE A 85 MET SELENOMETHIONINE MODRES 3F9S MSE A 109 MET SELENOMETHIONINE MODRES 3F9S MSE B 1 MET SELENOMETHIONINE MODRES 3F9S MSE B 85 MET SELENOMETHIONINE MODRES 3F9S MSE B 109 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 85 8 HET MSE A 109 8 HET MSE B 1 8 HET MSE B 85 8 HET MSE B 109 8 HET GOL A 146 6 HET GOL B 146 6 HETNAM MSE SELENOMETHIONINE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 3 GOL 2(C3 H8 O3) FORMUL 5 HOH *286(H2 O) HELIX 1 1 LYS A 6 TRP A 19 1 14 HELIX 2 2 ASN A 23 GLU A 25 5 3 HELIX 3 3 ALA A 26 TYR A 30 1 5 HELIX 4 4 ASP A 51 PHE A 66 1 16 HELIX 5 5 ASP A 130 ALA A 142 1 13 HELIX 6 6 LYS B 6 TRP B 19 1 14 HELIX 7 7 ASN B 23 GLU B 25 5 3 HELIX 8 8 ALA B 26 TYR B 30 1 5 HELIX 9 9 ASP B 51 ALA B 64 1 14 HELIX 10 10 ASP B 130 ALA B 142 1 13 SHEET 1 A 5 SER A 2 ILE A 3 0 SHEET 2 A 5 GLN A 106 GLY A 119 1 O GLY A 119 N SER A 2 SHEET 3 A 5 ARG A 121 THR A 129 -1 O TRP A 126 N VAL A 114 SHEET 4 A 5 ILE A 31 HIS A 39 1 N HIS A 39 O GLN A 127 SHEET 5 A 5 GLU A 49 LEU A 50 -1 O LEU A 50 N TYR A 35 SHEET 1 B 4 SER A 2 ILE A 3 0 SHEET 2 B 4 GLN A 106 GLY A 119 1 O GLY A 119 N SER A 2 SHEET 3 B 4 ALA A 82 THR A 92 -1 N ALA A 91 O ILE A 107 SHEET 4 B 4 CYS A 70 ASP A 79 -1 N GLN A 74 O THR A 86 SHEET 1 C 6 GLU B 49 LEU B 50 0 SHEET 2 C 6 ILE B 31 HIS B 39 -1 N TYR B 35 O LEU B 50 SHEET 3 C 6 ARG B 121 THR B 129 1 O GLN B 127 N HIS B 39 SHEET 4 C 6 GLN B 106 ASP B 118 -1 N VAL B 114 O TRP B 126 SHEET 5 C 6 ALA B 82 THR B 92 -1 N ALA B 91 O ILE B 107 SHEET 6 C 6 CYS B 70 ASP B 79 -1 N ASP B 79 O ALA B 82 LINK C GLY A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N SER A 2 1555 1555 1.33 LINK C VAL A 84 N MSE A 85 1555 1555 1.34 LINK C MSE A 85 N THR A 86 1555 1555 1.31 LINK C LYS A 108 N MSE A 109 1555 1555 1.32 LINK C MSE A 109 N SER A 110 1555 1555 1.32 LINK C BMSE B 1 N BSER B 2 1555 1555 1.33 LINK C VAL B 84 N MSE B 85 1555 1555 1.33 LINK C MSE B 85 N THR B 86 1555 1555 1.32 LINK C LYS B 108 N MSE B 109 1555 1555 1.32 LINK C MSE B 109 N SER B 110 1555 1555 1.32 SITE 1 AC1 6 TRP A 19 ARG A 58 TYR A 115 HIS A 125 SITE 2 AC1 6 GLN A 127 HOH A 150 SITE 1 AC2 9 TRP B 19 ARG B 58 THR B 113 TYR B 115 SITE 2 AC2 9 HIS B 125 GLN B 127 HOH B 165 HOH B 221 SITE 3 AC2 9 HOH B 253 CRYST1 50.970 48.594 55.967 90.00 94.19 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019619 0.000000 0.001438 0.00000 SCALE2 0.000000 0.020579 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017916 0.00000 CONECT 3 5 CONECT 5 3 6 CONECT 6 5 7 9 CONECT 7 6 8 13 CONECT 8 7 CONECT 9 6 10 CONECT 10 9 11 CONECT 11 10 12 CONECT 12 11 CONECT 13 7 CONECT 681 686 CONECT 686 681 687 CONECT 687 686 688 690 CONECT 688 687 689 694 CONECT 689 688 CONECT 690 687 691 CONECT 691 690 692 CONECT 692 691 693 CONECT 693 692 CONECT 694 688 CONECT 870 877 CONECT 877 870 878 CONECT 878 877 879 881 CONECT 879 878 880 885 CONECT 880 879 CONECT 881 878 882 CONECT 882 881 883 CONECT 883 882 884 CONECT 884 883 CONECT 885 879 CONECT 1154 1155 CONECT 1155 1154 1156 1158 CONECT 1156 1155 1157 1162 CONECT 1157 1156 CONECT 1158 1155 1159 CONECT 1159 1158 1160 CONECT 1160 1159 1161 CONECT 1161 1160 CONECT 1162 1156 CONECT 1856 1861 CONECT 1861 1856 1862 CONECT 1862 1861 1863 1865 CONECT 1863 1862 1864 1869 CONECT 1864 1863 CONECT 1865 1862 1866 CONECT 1866 1865 1867 CONECT 1867 1866 1868 CONECT 1868 1867 CONECT 1869 1863 CONECT 2056 2063 CONECT 2063 2056 2064 CONECT 2064 2063 2065 2067 CONECT 2065 2064 2066 2071 CONECT 2066 2065 CONECT 2067 2064 2068 CONECT 2068 2067 2069 CONECT 2069 2068 2070 CONECT 2070 2069 CONECT 2071 2065 CONECT 2336 2337 2338 CONECT 2337 2336 CONECT 2338 2336 2339 2340 CONECT 2339 2338 CONECT 2340 2338 2341 CONECT 2341 2340 CONECT 2342 2343 2344 CONECT 2343 2342 CONECT 2344 2342 2345 2346 CONECT 2345 2344 CONECT 2346 2344 2347 CONECT 2347 2346 MASTER 365 0 8 10 15 0 5 6 2561 2 71 24 END