HEADER LYASE 14-NOV-08 3F9S TITLE CRYSTAL STRUCTURE OF A PUTATIVE POLYKETIDE CYCLASE (LFERR_0659) FROM TITLE 2 ACIDITHIOBACILLUS FERROOXIDANS ATCC AT 1.76 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE POLYKETIDE CYCLASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACIDITHIOBACILLUS FERROOXIDANS; SOURCE 3 ORGANISM_COMMON: ACIDITHIOBACILLUS FERROOXIDANS NCIB8455; SOURCE 4 ORGANISM_TAXID: 243159; SOURCE 5 STRAIN: ATCC 23270; SOURCE 6 ATCC: 23270; SOURCE 7 GENE: AFE_2539, LFERR_0659; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, PSI-2, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 8 01-FEB-23 3F9S 1 REMARK SEQADV REVDAT 7 24-JUL-19 3F9S 1 REMARK LINK REVDAT 6 01-NOV-17 3F9S 1 REMARK REVDAT 5 02-APR-14 3F9S 1 SOURCE REVDAT 4 13-JUL-11 3F9S 1 VERSN REVDAT 3 23-MAR-11 3F9S 1 HEADER TITLE KEYWDS REVDAT 2 24-FEB-09 3F9S 1 VERSN REVDAT 1 25-NOV-08 3F9S 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE POLYKETIDE CYCLASE (AFE_2539) JRNL TITL 2 FROM ACIDITHIOBACILLUS FERROOXIDANS NCIB8455 AT 1.76 A JRNL TITL 3 RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.76 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.76 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.43 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 26993 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1358 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.76 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.81 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1838 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.61 REMARK 3 BIN R VALUE (WORKING SET) : 0.2170 REMARK 3 BIN FREE R VALUE SET COUNT : 99 REMARK 3 BIN FREE R VALUE : 0.2320 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2263 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 286 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 18.65 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.11000 REMARK 3 B22 (A**2) : 0.95000 REMARK 3 B33 (A**2) : -1.16000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.63000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.128 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.120 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.081 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.858 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2413 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1651 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3280 ; 1.793 ; 1.935 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4002 ; 1.354 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 301 ; 4.325 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 116 ;32.885 ;23.793 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 397 ; 9.963 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;13.817 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 345 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2713 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 517 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 505 ; 0.191 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1879 ; 0.164 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1219 ; 0.176 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1369 ; 0.084 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 340 ; 0.115 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 11 ; 0.104 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 53 ; 0.210 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 24 ; 0.105 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1534 ; 1.388 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 597 ; 0.237 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2344 ; 1.941 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1088 ; 3.233 ; 6.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 930 ; 4.384 ; 8.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 142 REMARK 3 ORIGIN FOR THE GROUP (A): 11.9510 18.2560 34.3810 REMARK 3 T TENSOR REMARK 3 T11: -0.1472 T22: -0.1020 REMARK 3 T33: -0.0583 T12: 0.0233 REMARK 3 T13: -0.0316 T23: -0.0177 REMARK 3 L TENSOR REMARK 3 L11: 1.7162 L22: 1.3748 REMARK 3 L33: 1.3603 L12: -0.0282 REMARK 3 L13: -0.0472 L23: -0.1689 REMARK 3 S TENSOR REMARK 3 S11: 0.0760 S12: 0.0377 S13: -0.2555 REMARK 3 S21: 0.0289 S22: -0.0299 S23: -0.1395 REMARK 3 S31: 0.1140 S32: 0.1900 S33: -0.0462 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 6 B 142 REMARK 3 ORIGIN FOR THE GROUP (A): -8.4480 19.0250 47.7070 REMARK 3 T TENSOR REMARK 3 T11: -0.1276 T22: -0.0842 REMARK 3 T33: -0.1156 T12: -0.0137 REMARK 3 T13: -0.0107 T23: 0.0162 REMARK 3 L TENSOR REMARK 3 L11: 0.6719 L22: 0.6829 REMARK 3 L33: 1.1095 L12: -0.2087 REMARK 3 L13: 0.2309 L23: 0.0046 REMARK 3 S TENSOR REMARK 3 S11: 0.0125 S12: -0.1249 S13: -0.0669 REMARK 3 S21: 0.1405 S22: -0.0070 S23: 0.0612 REMARK 3 S31: 0.0063 S32: -0.1506 S33: -0.0056 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. ATOM RECORDS CONTAIN RESIDUAL B FACTORS REMARK 3 ONLY. 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE REMARK 3 ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED REMARK 3 SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4. GOL REMARK 3 MOLECULES FROM THE CRYSTALLIZATION SOLUTION ARE MODELED IN THE REMARK 3 PUTATIVE ACTIVE SITE OF THE PROTEIN AND IT MAY REPRESENT THE REMARK 3 SUBSTRATE OF THE PROTEIN. 5. THE N-TERMINUS OF CHAIN B SHOWS REMARK 3 MULTIPLE ORDER. THIS HAS BEEN MODELED AS TWO CONFORMERS. FOR REMARK 3 CONFORMER A, RESIDUES 3-6 HAVE BEEN MODELED WITH RESIDUES 0-2 REMARK 3 OMITTED DUE TO DISORDER. FOR CONFORMER B, RESIDUES 1-6 HAVE BEEN REMARK 3 MODELED WITH ONLY RESIDUE 0 OMITTED DUE TO DISORDER. REMARK 4 REMARK 4 3F9S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-NOV-08. REMARK 100 THE DEPOSITION ID IS D_1000050325. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-OCT-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.94645,0.97967 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL REMARK 200 MONOCHROMETER REMARK 200 OPTICS : ADJUSTABLE FOCUSING MIRRORS IN K REMARK 200 -B GEOMETRY REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.2.5 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26997 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.760 REMARK 200 RESOLUTION RANGE LOW (A) : 30.429 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.11700 REMARK 200 R SYM (I) : 0.11700 REMARK 200 FOR THE DATA SET : 4.3230 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.73 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.77 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.44100 REMARK 200 R SYM FOR SHELL (I) : 0.44100 REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5.0000% GLYCEROL, 19.0000% ISO REMARK 280 -PROPANOL, 19.0000% PEG-4000, 0.1M CITRATE PH 5.6, NANODROP, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 24.29700 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT CRYSTAL PACKING ANALYSIS SUGGESTS THE REMARK 300 ASSIGNMENT OF A DIMER AS THE SIGNIFICANT OLIGOMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 143 REMARK 465 GLY A 144 REMARK 465 ALA A 145 REMARK 465 GLY B 0 REMARK 465 ALA B 143 REMARK 465 GLY B 144 REMARK 465 ALA B 145 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 34 CD CE NZ REMARK 470 LYS A 105 CG CD CE NZ REMARK 470 GLN B 140 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 16 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 2 -176.38 68.35 REMARK 500 ASP A 40 80.77 -174.76 REMARK 500 PRO A 98 109.66 -49.05 REMARK 500 SER A 102 109.23 -32.82 REMARK 500 ASP B 40 82.59 -172.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 146 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 146 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 391571 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3F9S A 1 145 UNP B5EMY1 B5EMY1_ACIF5 1 145 DBREF 3F9S B 1 145 UNP B5EMY1 B5EMY1_ACIF5 1 145 SEQADV 3F9S GLY A 0 UNP B5EMY1 EXPRESSION TAG SEQADV 3F9S GLY B 0 UNP B5EMY1 EXPRESSION TAG SEQRES 1 A 146 GLY MSE SER ILE SER SER LYS ALA LYS GLU ILE LEU THR SEQRES 2 A 146 GLN PHE THR ARG GLU VAL TRP SER GLU GLY ASN ILE GLU SEQRES 3 A 146 ALA SER ASP LYS TYR ILE ALA PRO LYS TYR THR VAL LEU SEQRES 4 A 146 HIS ASP PRO GLY ASP PRO TRP GLU GLY ARG GLU LEU ASP SEQRES 5 A 146 VAL ALA GLY TYR LYS GLU ARG VAL LYS THR LEU ARG ALA SEQRES 6 A 146 ALA PHE PRO ASP GLN CYS PHE ASP ILE GLN GLY LEU PHE SEQRES 7 A 146 ALA ASP GLY ASP ALA VAL VAL MSE THR TRP LEU TRP THR SEQRES 8 A 146 ALA THR HIS LYS GLU ASP ILE PRO GLY PHE PRO SER THR SEQRES 9 A 146 GLY LYS GLN ILE LYS MSE SER GLY ALA THR VAL TYR TYR SEQRES 10 A 146 PHE ASP GLY ASN ARG LEU THR GLY HIS TRP GLN ILE THR SEQRES 11 A 146 ASP ARG LEU GLY VAL TYR GLN GLN LEU ARG GLN ALA ALA SEQRES 12 A 146 ALA GLY ALA SEQRES 1 B 146 GLY MSE SER ILE SER SER LYS ALA LYS GLU ILE LEU THR SEQRES 2 B 146 GLN PHE THR ARG GLU VAL TRP SER GLU GLY ASN ILE GLU SEQRES 3 B 146 ALA SER ASP LYS TYR ILE ALA PRO LYS TYR THR VAL LEU SEQRES 4 B 146 HIS ASP PRO GLY ASP PRO TRP GLU GLY ARG GLU LEU ASP SEQRES 5 B 146 VAL ALA GLY TYR LYS GLU ARG VAL LYS THR LEU ARG ALA SEQRES 6 B 146 ALA PHE PRO ASP GLN CYS PHE ASP ILE GLN GLY LEU PHE SEQRES 7 B 146 ALA ASP GLY ASP ALA VAL VAL MSE THR TRP LEU TRP THR SEQRES 8 B 146 ALA THR HIS LYS GLU ASP ILE PRO GLY PHE PRO SER THR SEQRES 9 B 146 GLY LYS GLN ILE LYS MSE SER GLY ALA THR VAL TYR TYR SEQRES 10 B 146 PHE ASP GLY ASN ARG LEU THR GLY HIS TRP GLN ILE THR SEQRES 11 B 146 ASP ARG LEU GLY VAL TYR GLN GLN LEU ARG GLN ALA ALA SEQRES 12 B 146 ALA GLY ALA MODRES 3F9S MSE A 1 MET SELENOMETHIONINE MODRES 3F9S MSE A 85 MET SELENOMETHIONINE MODRES 3F9S MSE A 109 MET SELENOMETHIONINE MODRES 3F9S MSE B 1 MET SELENOMETHIONINE MODRES 3F9S MSE B 85 MET SELENOMETHIONINE MODRES 3F9S MSE B 109 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 85 8 HET MSE A 109 8 HET MSE B 1 8 HET MSE B 85 8 HET MSE B 109 8 HET GOL A 146 6 HET GOL B 146 6 HETNAM MSE SELENOMETHIONINE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 3 GOL 2(C3 H8 O3) FORMUL 5 HOH *286(H2 O) HELIX 1 1 LYS A 6 TRP A 19 1 14 HELIX 2 2 ASN A 23 GLU A 25 5 3 HELIX 3 3 ALA A 26 TYR A 30 1 5 HELIX 4 4 ASP A 51 PHE A 66 1 16 HELIX 5 5 ASP A 130 ALA A 142 1 13 HELIX 6 6 LYS B 6 TRP B 19 1 14 HELIX 7 7 ASN B 23 GLU B 25 5 3 HELIX 8 8 ALA B 26 TYR B 30 1 5 HELIX 9 9 ASP B 51 ALA B 64 1 14 HELIX 10 10 ASP B 130 ALA B 142 1 13 SHEET 1 A 5 SER A 2 ILE A 3 0 SHEET 2 A 5 GLN A 106 GLY A 119 1 O GLY A 119 N SER A 2 SHEET 3 A 5 ARG A 121 THR A 129 -1 O TRP A 126 N VAL A 114 SHEET 4 A 5 ILE A 31 HIS A 39 1 N HIS A 39 O GLN A 127 SHEET 5 A 5 GLU A 49 LEU A 50 -1 O LEU A 50 N TYR A 35 SHEET 1 B 4 SER A 2 ILE A 3 0 SHEET 2 B 4 GLN A 106 GLY A 119 1 O GLY A 119 N SER A 2 SHEET 3 B 4 ALA A 82 THR A 92 -1 N ALA A 91 O ILE A 107 SHEET 4 B 4 CYS A 70 ASP A 79 -1 N GLN A 74 O THR A 86 SHEET 1 C 6 GLU B 49 LEU B 50 0 SHEET 2 C 6 ILE B 31 HIS B 39 -1 N TYR B 35 O LEU B 50 SHEET 3 C 6 ARG B 121 THR B 129 1 O GLN B 127 N HIS B 39 SHEET 4 C 6 GLN B 106 ASP B 118 -1 N VAL B 114 O TRP B 126 SHEET 5 C 6 ALA B 82 THR B 92 -1 N ALA B 91 O ILE B 107 SHEET 6 C 6 CYS B 70 ASP B 79 -1 N ASP B 79 O ALA B 82 LINK C GLY A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N SER A 2 1555 1555 1.33 LINK C VAL A 84 N MSE A 85 1555 1555 1.34 LINK C MSE A 85 N THR A 86 1555 1555 1.31 LINK C LYS A 108 N MSE A 109 1555 1555 1.32 LINK C MSE A 109 N SER A 110 1555 1555 1.32 LINK C BMSE B 1 N BSER B 2 1555 1555 1.33 LINK C VAL B 84 N MSE B 85 1555 1555 1.33 LINK C MSE B 85 N THR B 86 1555 1555 1.32 LINK C LYS B 108 N MSE B 109 1555 1555 1.32 LINK C MSE B 109 N SER B 110 1555 1555 1.32 SITE 1 AC1 6 TRP A 19 ARG A 58 TYR A 115 HIS A 125 SITE 2 AC1 6 GLN A 127 HOH A 150 SITE 1 AC2 9 TRP B 19 ARG B 58 THR B 113 TYR B 115 SITE 2 AC2 9 HIS B 125 GLN B 127 HOH B 165 HOH B 221 SITE 3 AC2 9 HOH B 253 CRYST1 50.970 48.594 55.967 90.00 94.19 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019619 0.000000 0.001438 0.00000 SCALE2 0.000000 0.020579 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017916 0.00000