HEADER HYDROLASE 18-NOV-08 3FAX TITLE THE CRYSTAL STRUCTURE OF GBS PULLULANASE SAP IN COMPLEX WITH TITLE 2 MALTOTETRAOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RETICULOCYTE BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N2, N3, A AND C PULLULANASE DOMAINS, UNP RESIDUES 346-1215; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS AGALACTIAE COH1; SOURCE 3 ORGANISM_TAXID: 342616; SOURCE 4 GENE: SAN_1346; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET21-B KEYWDS TIM BARREL, ALPHA AMYLASE DOMAIN, PULLULANASE DOMAIN, HYDROLASE, CELL KEYWDS 2 WALL, PEPTIDOGLYCAN-ANCHOR, SECRETED EXPDTA X-RAY DIFFRACTION AUTHOR L.J.GOURLAY REVDAT 5 01-NOV-23 3FAX 1 HETSYN REVDAT 4 29-JUL-20 3FAX 1 COMPND REMARK SEQADV HETNAM REVDAT 4 2 1 LINK SITE ATOM REVDAT 3 13-JUL-11 3FAX 1 VERSN REVDAT 2 26-MAY-09 3FAX 1 JRNL REVDAT 1 14-APR-09 3FAX 0 JRNL AUTH L.J.GOURLAY,I.SANTI,A.PEZZICOLI,G.GRANDI,M.SORIANI, JRNL AUTH 2 M.BOLOGNESI JRNL TITL GROUP B STREPTOCOCCUS PULLULANASE CRYSTAL STRUCTURES IN THE JRNL TITL 2 CONTEXT OF A NOVEL STRATEGY FOR VACCINE DEVELOPMENT JRNL REF J.BACTERIOL. V. 191 3544 2009 JRNL REFN ISSN 0021-9193 JRNL PMID 19329633 JRNL DOI 10.1128/JB.01755-08 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0053 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 32409 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.283 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1726 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2337 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.88 REMARK 3 BIN R VALUE (WORKING SET) : 0.3060 REMARK 3 BIN FREE R VALUE SET COUNT : 127 REMARK 3 BIN FREE R VALUE : 0.3750 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6083 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 39 REMARK 3 SOLVENT ATOMS : 63 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 41.06 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.87000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : -6.86000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.487 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.302 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.254 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 24.663 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.886 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6250 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 4201 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8460 ; 1.014 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10281 ; 0.787 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 768 ; 5.641 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 294 ;33.547 ;25.136 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1088 ;13.946 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;12.163 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 946 ; 0.060 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6913 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1209 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3833 ; 1.165 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1568 ; 0.240 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6185 ; 1.875 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2417 ; 1.122 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2274 ; 1.658 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 380 A 466 REMARK 3 ORIGIN FOR THE GROUP (A): 2.3096 83.7666 35.6913 REMARK 3 T TENSOR REMARK 3 T11: 0.0648 T22: 0.0798 REMARK 3 T33: 0.0515 T12: -0.0396 REMARK 3 T13: 0.0052 T23: -0.0323 REMARK 3 L TENSOR REMARK 3 L11: 4.5368 L22: 5.3074 REMARK 3 L33: 6.5304 L12: 0.0549 REMARK 3 L13: 1.5687 L23: 0.2549 REMARK 3 S TENSOR REMARK 3 S11: -0.0662 S12: -0.2230 S13: -0.0513 REMARK 3 S21: -0.0057 S22: 0.0676 S23: 0.3077 REMARK 3 S31: 0.5924 S32: -0.4400 S33: -0.0014 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 467 A 590 REMARK 3 ORIGIN FOR THE GROUP (A): 28.3914 59.9509 42.8556 REMARK 3 T TENSOR REMARK 3 T11: 0.0320 T22: 0.1423 REMARK 3 T33: 0.0171 T12: 0.0103 REMARK 3 T13: 0.0067 T23: 0.0029 REMARK 3 L TENSOR REMARK 3 L11: 0.7094 L22: 1.8875 REMARK 3 L33: 3.3906 L12: -0.6629 REMARK 3 L13: 0.7367 L23: -0.0216 REMARK 3 S TENSOR REMARK 3 S11: -0.0844 S12: -0.2855 S13: -0.0165 REMARK 3 S21: 0.2440 S22: 0.0934 S23: 0.0343 REMARK 3 S31: -0.0120 S32: -0.2928 S33: -0.0090 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 591 A 1056 REMARK 3 ORIGIN FOR THE GROUP (A): 32.7150 53.6287 11.5260 REMARK 3 T TENSOR REMARK 3 T11: 0.0450 T22: 0.0076 REMARK 3 T33: 0.0440 T12: 0.0101 REMARK 3 T13: -0.0038 T23: -0.0138 REMARK 3 L TENSOR REMARK 3 L11: 0.4648 L22: 0.7262 REMARK 3 L33: 3.8117 L12: -0.0751 REMARK 3 L13: -0.0498 L23: 0.3779 REMARK 3 S TENSOR REMARK 3 S11: 0.0141 S12: 0.0003 S13: 0.0011 REMARK 3 S21: -0.0606 S22: 0.0186 S23: 0.0007 REMARK 3 S31: 0.3476 S32: 0.1193 S33: -0.0327 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1057 A 1160 REMARK 3 ORIGIN FOR THE GROUP (A): 43.5124 57.8736 -18.1822 REMARK 3 T TENSOR REMARK 3 T11: 0.2048 T22: 0.3092 REMARK 3 T33: 0.0853 T12: -0.0537 REMARK 3 T13: 0.0523 T23: -0.0309 REMARK 3 L TENSOR REMARK 3 L11: 0.5471 L22: 0.3554 REMARK 3 L33: 3.3575 L12: -0.0952 REMARK 3 L13: -0.2972 L23: 0.0053 REMARK 3 S TENSOR REMARK 3 S11: 0.0999 S12: 0.1812 S13: 0.0572 REMARK 3 S21: -0.2555 S22: 0.0086 S23: -0.0329 REMARK 3 S31: -0.2216 S32: 0.7580 S33: -0.1085 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3FAX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-NOV-08. REMARK 100 THE DEPOSITION ID IS D_1000050364. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JUN-08 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 9.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34193 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : 0.07700 REMARK 200 FOR THE DATA SET : 11.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.35100 REMARK 200 R SYM FOR SHELL (I) : 0.35100 REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3FAW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG3K, 0.2M CACL2, 0.05M CAPSO, REMARK 280 PH9.8, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.10700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 85.84500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.43100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 85.84500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.10700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 51.43100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 346 REMARK 465 LYS A 347 REMARK 465 VAL A 348 REMARK 465 GLN A 349 REMARK 465 PRO A 350 REMARK 465 ASN A 351 REMARK 465 ASP A 352 REMARK 465 TYR A 353 REMARK 465 VAL A 354 REMARK 465 PHE A 355 REMARK 465 ARG A 356 REMARK 465 ASP A 357 REMARK 465 LEU A 358 REMARK 465 ALA A 359 REMARK 465 ASN A 360 REMARK 465 HIS A 361 REMARK 465 ASN A 362 REMARK 465 GLN A 363 REMARK 465 ILE A 364 REMARK 465 PHE A 365 REMARK 465 VAL A 366 REMARK 465 LYS A 367 REMARK 465 ASP A 368 REMARK 465 LYS A 369 REMARK 465 ASP A 370 REMARK 465 PRO A 371 REMARK 465 LYS A 372 REMARK 465 VAL A 373 REMARK 465 TYR A 374 REMARK 465 ASN A 375 REMARK 465 ASN A 376 REMARK 465 PRO A 377 REMARK 465 TYR A 378 REMARK 465 TYR A 379 REMARK 465 ILE A 380 REMARK 465 ASP A 381 REMARK 465 GLN A 382 REMARK 465 ASN A 421 REMARK 465 GLY A 458 REMARK 465 LYS A 556 REMARK 465 LYS A 632 REMARK 465 LEU A 633 REMARK 465 ASP A 985 REMARK 465 LYS A 1090 REMARK 465 VAL A 1161 REMARK 465 ALA A 1162 REMARK 465 PRO A 1163 REMARK 465 SER A 1164 REMARK 465 PRO A 1165 REMARK 465 LYS A 1166 REMARK 465 GLU A 1167 REMARK 465 GLU A 1168 REMARK 465 LEU A 1169 REMARK 465 GLN A 1170 REMARK 465 ALA A 1171 REMARK 465 ASP A 1172 REMARK 465 TYR A 1173 REMARK 465 PRO A 1174 REMARK 465 LYS A 1175 REMARK 465 THR A 1176 REMARK 465 GLN A 1177 REMARK 465 SER A 1178 REMARK 465 PHE A 1179 REMARK 465 LYS A 1180 REMARK 465 GLY A 1181 REMARK 465 SER A 1182 REMARK 465 LYS A 1183 REMARK 465 THR A 1184 REMARK 465 VAL A 1185 REMARK 465 GLU A 1186 REMARK 465 LYS A 1187 REMARK 465 VAL A 1188 REMARK 465 ASN A 1189 REMARK 465 ARG A 1190 REMARK 465 ILE A 1191 REMARK 465 ALA A 1192 REMARK 465 ASN A 1193 REMARK 465 LYS A 1194 REMARK 465 THR A 1195 REMARK 465 SER A 1196 REMARK 465 ILE A 1197 REMARK 465 THR A 1198 REMARK 465 PRO A 1199 REMARK 465 VAL A 1200 REMARK 465 VAL A 1201 REMARK 465 SER A 1202 REMARK 465 ASN A 1203 REMARK 465 LYS A 1204 REMARK 465 THR A 1205 REMARK 465 ASP A 1206 REMARK 465 SER A 1207 REMARK 465 TYR A 1208 REMARK 465 LEU A 1209 REMARK 465 THR A 1210 REMARK 465 ASN A 1211 REMARK 465 GLU A 1212 REMARK 465 ALA A 1213 REMARK 465 ASN A 1214 REMARK 465 LEU A 1215 REMARK 465 GLU A 1216 REMARK 465 HIS A 1217 REMARK 465 HIS A 1218 REMARK 465 HIS A 1219 REMARK 465 HIS A 1220 REMARK 465 HIS A 1221 REMARK 465 HIS A 1222 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 386 -64.41 -96.17 REMARK 500 GLN A 449 45.74 -80.02 REMARK 500 SER A 497 80.21 -162.44 REMARK 500 ASN A 512 99.27 -165.25 REMARK 500 ASN A 606 -6.39 65.10 REMARK 500 ASP A 630 -6.36 -52.29 REMARK 500 TYR A 691 31.66 -94.70 REMARK 500 LYS A 706 78.53 -119.80 REMARK 500 TYR A 753 -62.05 -154.22 REMARK 500 MET A 803 60.07 36.96 REMARK 500 THR A 857 -66.77 -107.81 REMARK 500 LYS A 870 38.64 -156.58 REMARK 500 SER A 871 156.96 71.37 REMARK 500 ASN A 875 42.55 -100.07 REMARK 500 ASN A 920 -172.61 69.02 REMARK 500 TYR A1001 76.46 53.53 REMARK 500 ASP A1007 83.43 -154.21 REMARK 500 GLN A1072 109.17 -58.48 REMARK 500 ASP A1144 32.42 -148.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 4 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET A 852 O REMARK 620 2 THR A 855 O 88.0 REMARK 620 3 ASP A 856 OD1 167.0 79.4 REMARK 620 4 ASP A 906 OD1 85.0 151.3 104.5 REMARK 620 5 ASP A 910 OD1 103.2 85.7 79.3 123.0 REMARK 620 6 ASP A 910 OD2 86.0 130.3 104.6 77.0 48.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1223 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 52 O REMARK 620 2 HOH A 57 O 74.4 REMARK 620 3 LYS A 510 O 81.3 62.0 REMARK 620 4 TYR A 547 OH 132.3 59.5 87.0 REMARK 620 5 LYS A 708 O 102.4 87.2 147.1 66.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1225 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 59 O REMARK 620 2 LYS A 652 O 132.6 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1224 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 685 O REMARK 620 2 TYR A 687 O 72.5 REMARK 620 3 ASP A1010 OD1 78.9 106.7 REMARK 620 N 1 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3FAW RELATED DB: PDB DBREF 3FAX A 346 1215 UNP Q3DB05 Q3DB05_STRAG 346 1215 SEQADV 3FAX GLU A 1216 UNP Q3DB05 EXPRESSION TAG SEQADV 3FAX HIS A 1217 UNP Q3DB05 EXPRESSION TAG SEQADV 3FAX HIS A 1218 UNP Q3DB05 EXPRESSION TAG SEQADV 3FAX HIS A 1219 UNP Q3DB05 EXPRESSION TAG SEQADV 3FAX HIS A 1220 UNP Q3DB05 EXPRESSION TAG SEQADV 3FAX HIS A 1221 UNP Q3DB05 EXPRESSION TAG SEQADV 3FAX HIS A 1222 UNP Q3DB05 EXPRESSION TAG SEQRES 1 A 877 VAL LYS VAL GLN PRO ASN ASP TYR VAL PHE ARG ASP LEU SEQRES 2 A 877 ALA ASN HIS ASN GLN ILE PHE VAL LYS ASP LYS ASP PRO SEQRES 3 A 877 LYS VAL TYR ASN ASN PRO TYR TYR ILE ASP GLN VAL GLN SEQRES 4 A 877 LEU LYS ASP ALA GLN GLN THR ASP LEU THR SER ILE GLN SEQRES 5 A 877 ALA SER PHE THR THR LEU ASP GLY VAL ASP LYS THR GLU SEQRES 6 A 877 ILE LEU LYS GLU LEU LYS VAL THR ASP LYS ASN GLN ASN SEQRES 7 A 877 ALA ILE GLN ILE SER ASP ILE THR LEU ASP THR SER LYS SEQRES 8 A 877 SER LEU LEU ILE ILE LYS GLY ASP PHE ASN PRO LYS GLN SEQRES 9 A 877 GLY HIS PHE ASN ILE SER TYR ASN GLY ASN ASN VAL THR SEQRES 10 A 877 THR ARG GLN SER TRP GLU PHE LYS ASP GLN LEU TYR ALA SEQRES 11 A 877 TYR SER GLY ASN LEU GLY ALA VAL LEU ASN GLN ASP GLY SEQRES 12 A 877 SER LYS VAL GLU ALA SER LEU TRP SER PRO SER ALA ASP SEQRES 13 A 877 SER VAL THR MET ILE ILE TYR ASP LYS ASP ASN GLN ASN SEQRES 14 A 877 ARG VAL VAL ALA THR THR PRO LEU VAL LYS ASN ASN LYS SEQRES 15 A 877 GLY VAL TRP GLN THR ILE LEU ASP THR LYS LEU GLY ILE SEQRES 16 A 877 LYS ASN TYR THR GLY TYR TYR TYR LEU TYR GLU ILE LYS SEQRES 17 A 877 ARG GLY LYS ASP LYS VAL LYS ILE LEU ASP PRO TYR ALA SEQRES 18 A 877 LYS SER LEU ALA GLU TRP ASP SER ASN THR VAL ASN ASP SEQRES 19 A 877 ASP ILE LYS THR ALA LYS ALA ALA PHE VAL ASN PRO SER SEQRES 20 A 877 GLN LEU GLY PRO GLN ASN LEU SER PHE ALA LYS ILE ALA SEQRES 21 A 877 ASN PHE LYS GLY ARG GLN ASP ALA VAL ILE TYR GLU ALA SEQRES 22 A 877 HIS VAL ARG ASP PHE THR SER ASP GLN SER LEU ASP GLY SEQRES 23 A 877 LYS LEU LYS ASN GLN LEU GLY THR PHE ALA ALA PHE SER SEQRES 24 A 877 GLU LYS LEU ASP TYR LEU GLN LYS LEU GLY VAL THR HIS SEQRES 25 A 877 ILE GLN LEU LEU PRO VAL LEU SER TYR PHE TYR VAL ASN SEQRES 26 A 877 GLU MET ASP LYS SER ARG SER THR ALA TYR THR SER SER SEQRES 27 A 877 ASP ASN ASN TYR ASN TRP GLY TYR ASP PRO GLN SER TYR SEQRES 28 A 877 PHE ALA LEU SER GLY MET TYR SER GLU LYS PRO LYS ASP SEQRES 29 A 877 PRO SER ALA ARG ILE ALA GLU LEU LYS GLN LEU ILE HIS SEQRES 30 A 877 ASP ILE HIS LYS ARG GLY MET GLY VAL ILE LEU ASP VAL SEQRES 31 A 877 VAL TYR ASN HIS THR ALA LYS THR TYR LEU PHE GLU ASP SEQRES 32 A 877 ILE GLU PRO ASN TYR TYR HIS PHE MET ASN GLU ASP GLY SEQRES 33 A 877 SER PRO ARG GLU SER PHE GLY GLY GLY ARG LEU GLY THR SEQRES 34 A 877 THR HIS ALA MET SER ARG ARG VAL LEU VAL ASP SER ILE SEQRES 35 A 877 LYS TYR LEU THR SER GLU PHE LYS VAL ASP GLY PHE ARG SEQRES 36 A 877 PHE ASP MET MET GLY ASP HIS ASP ALA ALA ALA ILE GLU SEQRES 37 A 877 LEU ALA TYR LYS GLU ALA LYS ALA ILE ASN PRO ASN MET SEQRES 38 A 877 ILE MET ILE GLY GLU GLY TRP ARG THR PHE GLN GLY ASP SEQRES 39 A 877 GLN GLY LYS PRO VAL LYS PRO ALA ASP GLN ASP TRP MET SEQRES 40 A 877 LYS SER THR ASP THR VAL GLY VAL PHE SER ASP ASP ILE SEQRES 41 A 877 ARG ASN SER LEU LYS SER GLY PHE PRO ASN GLU GLY THR SEQRES 42 A 877 PRO ALA PHE ILE THR GLY GLY PRO GLN SER LEU GLN GLY SEQRES 43 A 877 ILE PHE LYS ASN ILE LYS ALA GLN PRO GLY ASN PHE GLU SEQRES 44 A 877 ALA ASP SER PRO GLY ASP VAL VAL GLN TYR ILE ALA ALA SEQRES 45 A 877 HIS ASP ASN LEU THR LEU HIS ASP VAL ILE ALA LYS SER SEQRES 46 A 877 ILE ASN LYS ASP PRO LYS VAL ALA GLU GLU ASP ILE HIS SEQRES 47 A 877 ARG ARG LEU ARG LEU GLY ASN VAL MET ILE LEU THR SER SEQRES 48 A 877 GLN GLY THR ALA PHE ILE HIS SER GLY GLN GLU TYR GLY SEQRES 49 A 877 ARG THR LYS ARG LEU LEU ASN PRO ASP TYR MET THR LYS SEQRES 50 A 877 VAL SER ASP ASP LYS LEU PRO ASN LYS ALA THR LEU ILE SEQRES 51 A 877 GLU ALA VAL LYS GLU TYR PRO TYR PHE ILE HIS ASP SER SEQRES 52 A 877 TYR ASP SER SER ASP ALA ILE ASN HIS PHE ASP TRP ALA SEQRES 53 A 877 ALA ALA THR ASP ASN ASN LYS HIS PRO ILE SER THR LYS SEQRES 54 A 877 THR GLN ALA TYR THR ALA GLY LEU ILE THR LEU ARG ARG SEQRES 55 A 877 SER THR ASP ALA PHE ARG LYS LEU SER LYS ALA GLU ILE SEQRES 56 A 877 ASP ARG GLU VAL SER LEU ILE THR GLU VAL GLY GLN GLY SEQRES 57 A 877 ASP ILE LYS GLU LYS ASP LEU VAL ILE ALA TYR GLN THR SEQRES 58 A 877 ILE ASP SER LYS GLY ASP ILE TYR ALA VAL PHE VAL ASN SEQRES 59 A 877 ALA ASP SER LYS ALA ARG ASN VAL LEU LEU GLY GLU LYS SEQRES 60 A 877 TYR LYS HIS LEU LEU LYS GLY GLN VAL ILE VAL ASP ALA SEQRES 61 A 877 ASP GLN ALA GLY ILE LYS PRO ILE SER THR PRO ARG GLY SEQRES 62 A 877 VAL HIS PHE GLU LYS ASP SER LEU LEU ILE ASP PRO LEU SEQRES 63 A 877 THR ALA ILE VAL ILE LYS VAL GLY LYS VAL ALA PRO SER SEQRES 64 A 877 PRO LYS GLU GLU LEU GLN ALA ASP TYR PRO LYS THR GLN SEQRES 65 A 877 SER PHE LYS GLY SER LYS THR VAL GLU LYS VAL ASN ARG SEQRES 66 A 877 ILE ALA ASN LYS THR SER ILE THR PRO VAL VAL SER ASN SEQRES 67 A 877 LYS THR ASP SER TYR LEU THR ASN GLU ALA ASN LEU GLU SEQRES 68 A 877 HIS HIS HIS HIS HIS HIS HET BGC B 1 12 HET GLC B 2 11 HET GLC B 3 11 HET CA A1223 1 HET CA A1224 1 HET CA A1225 1 HET CA A 4 1 HET CL A1226 1 HETNAM BGC BETA-D-GLUCOPYRANOSE HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM CA CALCIUM ION HETNAM CL CHLORIDE ION HETSYN BGC BETA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE FORMUL 2 BGC C6 H12 O6 FORMUL 2 GLC 2(C6 H12 O6) FORMUL 3 CA 4(CA 2+) FORMUL 7 CL CL 1- FORMUL 8 HOH *63(H2 O) HELIX 1 1 ASP A 407 LEU A 415 1 9 HELIX 2 2 SER A 466 ALA A 475 1 10 HELIX 3 3 ASP A 535 GLY A 539 5 5 HELIX 4 4 ASP A 573 VAL A 577 5 5 HELIX 5 5 ASN A 590 LEU A 594 5 5 HELIX 6 6 GLY A 609 ASP A 612 5 4 HELIX 7 7 HIS A 619 SER A 625 1 7 HELIX 8 8 ASP A 626 ASP A 630 5 5 HELIX 9 9 THR A 639 LYS A 646 1 8 HELIX 10 10 LYS A 646 GLY A 654 1 9 HELIX 11 11 SER A 700 SER A 704 5 5 HELIX 12 12 ASP A 709 ARG A 727 1 19 HELIX 13 13 THR A 743 ASP A 748 1 6 HELIX 14 14 HIS A 776 PHE A 794 1 19 HELIX 15 15 MET A 803 HIS A 807 5 5 HELIX 16 16 ASP A 808 ASN A 823 1 16 HELIX 17 17 ASP A 848 THR A 855 5 8 HELIX 18 18 ASP A 863 SER A 871 1 9 HELIX 19 19 LEU A 889 LYS A 897 1 9 HELIX 20 20 SER A 907 GLY A 909 5 3 HELIX 21 21 THR A 922 ASN A 932 1 11 HELIX 22 22 ALA A 938 THR A 955 1 18 HELIX 23 23 ASN A 976 MET A 980 5 5 HELIX 24 24 ASP A 1007 SER A 1011 5 5 HELIX 25 25 SER A 1012 HIS A 1017 1 6 HELIX 26 26 ASP A 1019 ASP A 1025 1 7 HELIX 27 27 HIS A 1029 SER A 1048 1 20 HELIX 28 28 SER A 1056 VAL A 1064 1 9 HELIX 29 29 LEU A 1109 LYS A 1114 1 6 HELIX 30 30 HIS A 1115 GLY A 1119 5 5 SHEET 1 A 5 ILE A 427 ASP A 433 0 SHEET 2 A 5 LEU A 438 GLY A 443 -1 O ILE A 440 N THR A 431 SHEET 3 A 5 SER A 395 PHE A 400 -1 N ILE A 396 O ILE A 441 SHEET 4 A 5 LEU A 385 ASP A 392 -1 N GLN A 389 O GLN A 397 SHEET 5 A 5 ARG A 464 GLN A 465 1 O ARG A 464 N GLN A 390 SHEET 1 B 4 ALA A 424 ILE A 425 0 SHEET 2 B 4 LYS A 416 THR A 418 -1 N VAL A 417 O ILE A 425 SHEET 3 B 4 ASN A 453 SER A 455 -1 O SER A 455 N LYS A 416 SHEET 4 B 4 ASN A 460 THR A 462 -1 O VAL A 461 N ILE A 454 SHEET 1 C 4 GLY A 481 LEU A 484 0 SHEET 2 C 4 VAL A 491 TRP A 496 -1 O SER A 494 N GLY A 481 SHEET 3 C 4 VAL A 529 LEU A 534 -1 O TRP A 530 N LEU A 495 SHEET 4 C 4 VAL A 523 LYS A 524 -1 N VAL A 523 O GLN A 531 SHEET 1 D 4 ASN A 512 PRO A 521 0 SHEET 2 D 4 SER A 502 ASP A 509 -1 N ILE A 507 O ALA A 518 SHEET 3 D 4 TYR A 547 LYS A 553 -1 O LEU A 549 N ILE A 506 SHEET 4 D 4 VAL A 559 ILE A 561 -1 O ILE A 561 N TYR A 550 SHEET 1 E 4 ASN A 512 PRO A 521 0 SHEET 2 E 4 SER A 502 ASP A 509 -1 N ILE A 507 O ALA A 518 SHEET 3 E 4 TYR A 547 LYS A 553 -1 O LEU A 549 N ILE A 506 SHEET 4 E 4 ALA A 586 ALA A 587 -1 O ALA A 586 N TYR A 548 SHEET 1 F 9 VAL A 614 ALA A 618 0 SHEET 2 F 9 HIS A 657 LEU A 660 1 O GLN A 659 N ALA A 618 SHEET 3 F 9 GLY A 730 VAL A 735 1 O GLY A 730 N ILE A 658 SHEET 4 F 9 GLY A 798 PHE A 801 1 O ARG A 800 N VAL A 735 SHEET 5 F 9 ILE A 827 GLY A 830 1 O ILE A 829 N PHE A 799 SHEET 6 F 9 VAL A 858 SER A 862 1 O GLY A 859 N MET A 828 SHEET 7 F 9 VAL A 911 GLN A 913 1 O VAL A 912 N VAL A 860 SHEET 8 F 9 THR A 959 HIS A 963 1 O THR A 959 N GLN A 913 SHEET 9 F 9 VAL A 614 ALA A 618 1 N ILE A 615 O ALA A 960 SHEET 1 G 2 GLN A 887 SER A 888 0 SHEET 2 G 2 LYS A1078 ASP A1079 -1 O ASP A1079 N GLN A 887 SHEET 1 H 2 ALA A 992 LEU A 994 0 SHEET 2 H 2 TYR A1003 ILE A1005 -1 O PHE A1004 N THR A 993 SHEET 1 I 5 SER A1065 LEU A1066 0 SHEET 2 I 5 VAL A1081 ILE A1087 -1 O GLN A1085 N SER A1065 SHEET 3 I 5 ILE A1093 ASN A1099 -1 O TYR A1094 N THR A1086 SHEET 4 I 5 THR A1152 VAL A1158 -1 O ILE A1154 N PHE A1097 SHEET 5 I 5 GLN A1120 VAL A1123 -1 N GLN A1120 O LYS A1157 SHEET 1 J 3 ARG A1105 LEU A1108 0 SHEET 2 J 3 SER A1145 ILE A1148 -1 O LEU A1146 N VAL A1107 SHEET 3 J 3 VAL A1139 PHE A1141 -1 N HIS A1140 O LEU A1147 LINK O4 BGC B 1 C1 GLC B 2 1555 1555 1.45 LINK O4 GLC B 2 C1 GLC B 3 1555 1555 1.44 LINK CA CA A 4 O MET A 852 1555 1555 2.35 LINK CA CA A 4 O THR A 855 1555 1555 2.30 LINK CA CA A 4 OD1 ASP A 856 1555 1555 2.37 LINK CA CA A 4 OD1 ASP A 906 1555 1555 2.34 LINK CA CA A 4 OD1 ASP A 910 1555 1555 2.86 LINK CA CA A 4 OD2 ASP A 910 1555 1555 2.44 LINK O HOH A 52 CA CA A1223 1555 1555 2.31 LINK O HOH A 57 CA CA A1223 1555 1555 2.41 LINK O HOH A 59 CA CA A1225 1555 1555 2.58 LINK O LYS A 510 CA CA A1223 1555 1555 2.63 LINK OH TYR A 547 CA CA A1223 1555 1555 2.75 LINK O LYS A 652 CA CA A1225 1555 1555 2.55 LINK O ASN A 685 CA CA A1224 1555 1555 2.37 LINK O TYR A 687 CA CA A1224 1555 1555 2.39 LINK O LYS A 708 CA CA A1223 1555 1555 2.34 LINK OD1 ASP A1010 CA CA A1224 1555 1555 2.53 CISPEP 1 PHE A 873 PRO A 874 0 4.16 CRYST1 48.214 102.862 171.690 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020741 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009722 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005824 0.00000