HEADER HYDROLASE 20-NOV-08 3FBX TITLE CRYSTAL STRUCTURE OF THE LYSOSOMAL 66.3 KDA PROTEIN FROM MOUSE SOLVED TITLE 2 BY S-SAD COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE PHOSPHOLIPASE B-LIKE 2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 66.3 KDA PROTEIN, LAMINA ANCESTOR HOMOLOG 2, LAMA-LIKE COMPND 5 PROTEIN 2, 76 KDA PROTEIN, P76, PUTATIVE PHOSPHOLIPASE B-LIKE 2 28 COMPND 6 KDA FORM, PUTATIVE PHOSPHOLIPASE B-LIKE 2 40 KDA FORM, PUTATIVE COMPND 7 PHOSPHOLIPASE B-LIKE 2 15 KDA FORM; COMPND 8 EC: 3.1.1.-; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 STRAIN: C3H/RV; SOURCE 6 GENE: AAG44101; SOURCE 7 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 8 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 10 EXPRESSION_SYSTEM_CELL_LINE: HT1080; SOURCE 11 EXPRESSION_SYSTEM_CELL: FIBROSARCOMA CELL; SOURCE 12 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 13 EXPRESSION_SYSTEM_PLASMID: PCDNA3.1/HYGRO(+) KEYWDS ALPHA BETA, GLYCOSYLATED, DISULPHIDE BONDS, OXIDIZED CYSTEINE, KEYWDS 2 GLYCOPROTEIN, HYDROLASE, LIPID DEGRADATION, LYSOSOME EXPDTA X-RAY DIFFRACTION AUTHOR K.LAKOMEK,A.DICKMANNS,U.MUELLER,R.FICNER REVDAT 5 27-DEC-23 3FBX 1 HETSYN REVDAT 4 29-JUL-20 3FBX 1 COMPND REMARK SEQADV HETNAM REVDAT 4 2 1 LINK SITE ATOM REVDAT 3 01-NOV-17 3FBX 1 REMARK REVDAT 2 13-JUL-11 3FBX 1 VERSN REVDAT 1 03-MAR-09 3FBX 0 JRNL AUTH K.LAKOMEK,A.DICKMANNS,U.MUELLER,K.KOLLMANN,F.DEUSCHL, JRNL AUTH 2 A.BERNDT,T.LUBKE,R.FICNER JRNL TITL DE NOVO SULFUR SAD PHASING OF THE LYSOSOMAL 66.3 KDA PROTEIN JRNL TITL 2 FROM MOUSE JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 65 220 2009 JRNL REFN ISSN 0907-4449 JRNL PMID 19237744 JRNL DOI 10.1107/S0907444908041814 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.11 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 30794 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1620 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2134 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.69 REMARK 3 BIN R VALUE (WORKING SET) : 0.1650 REMARK 3 BIN FREE R VALUE SET COUNT : 130 REMARK 3 BIN FREE R VALUE : 0.2020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4159 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 130 REMARK 3 SOLVENT ATOMS : 294 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.50000 REMARK 3 B22 (A**2) : -0.48000 REMARK 3 B33 (A**2) : 0.87000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.36000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.235 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.188 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.113 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.683 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4445 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6036 ; 1.436 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 528 ; 6.505 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 208 ;35.310 ;24.087 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 689 ;16.265 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;20.148 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 647 ; 0.100 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3383 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2048 ; 0.200 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2998 ; 0.304 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 285 ; 0.166 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.025 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 39 ; 0.168 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 9 ; 0.117 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2613 ; 0.701 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4213 ; 1.417 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1933 ; 2.392 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1818 ; 3.796 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 3FBX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-NOV-08. REMARK 100 THE DEPOSITION ID IS D_1000050399. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-MAY-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.9000 REMARK 200 MONOCHROMATOR : SI-111 CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32641 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 23.00 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 48.8130 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.5 REMARK 200 DATA REDUNDANCY IN SHELL : 21.20 REMARK 200 R MERGE FOR SHELL (I) : 0.37300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 10.20 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% (W/V) PEG 4000, 200MM NH4AC, 100MM REMARK 280 NAAC/HAC PH 4.6, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K, REMARK 280 PH 5.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 74.40200 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.83600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 74.40200 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 44.83600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHOR STATES THAT THE BIOLOGICAL UNIT IS UNKNOWN REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 39320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -9.79138 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 64.21177 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 47 REMARK 465 PRO A 48 REMARK 465 THR A 49 REMARK 465 LEU A 50 REMARK 465 GLY A 51 REMARK 465 PRO A 52 REMARK 465 GLY A 53 REMARK 465 TRP A 54 REMARK 465 GLN A 55 REMARK 465 ARG A 56 REMARK 465 GLN A 57 REMARK 465 ASN A 58 REMARK 465 PRO A 59 REMARK 465 ASP A 60 REMARK 465 PRO A 61 REMARK 465 PRO A 62 REMARK 465 ASN A 239 REMARK 465 THR A 240 REMARK 465 LYS A 241 REMARK 465 PRO A 242 REMARK 465 SER A 243 REMARK 465 LEU A 244 REMARK 465 GLY A 245 REMARK 465 SER A 246 REMARK 465 GLY A 247 REMARK 465 SER A 248 REMARK 465 TRP A 593 REMARK 465 ASP A 594 REMARK 465 GLY A 595 REMARK 465 ARG A 596 REMARK 465 GLY A 597 REMARK 465 SER A 598 REMARK 465 HIS A 599 REMARK 465 HIS A 600 REMARK 465 HIS A 601 REMARK 465 HIS A 602 REMARK 465 HIS A 603 REMARK 465 HIS A 604 REMARK 465 GLY A 605 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN A 520 O5 NAG A 41 1.82 REMARK 500 NE2 GLN A 382 OE2 GLU A 407 2.03 REMARK 500 ND2 ASN A 236 O5 NAG A 21 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 275 43.23 -82.84 REMARK 500 ASN A 394 -4.23 73.30 REMARK 500 ARG A 401 -23.78 82.39 REMARK 500 TYR A 431 49.71 -162.68 REMARK 500 PRO A 571 7.25 -67.59 REMARK 500 HIS A 577 46.56 -146.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 153 VAL A 154 -149.32 REMARK 500 VAL A 154 GLY A 155 33.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 609 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 OCS A 249 OD3 REMARK 620 2 ASP A 315 O 92.0 REMARK 620 3 GLU A 328 OE1 127.2 77.0 REMARK 620 4 GLU A 328 OE2 87.9 95.7 43.6 REMARK 620 5 THR A 330 OG1 81.3 168.5 99.5 74.8 REMARK 620 6 TYR A 379 OH 158.3 100.3 73.5 108.4 89.1 REMARK 620 N 1 2 3 4 5 DBREF 3FBX A 47 594 UNP Q3TCN2 PLBL2_MOUSE 47 594 SEQADV 3FBX GLY A 595 UNP Q3TCN2 EXPRESSION TAG SEQADV 3FBX ARG A 596 UNP Q3TCN2 EXPRESSION TAG SEQADV 3FBX GLY A 597 UNP Q3TCN2 EXPRESSION TAG SEQADV 3FBX SER A 598 UNP Q3TCN2 EXPRESSION TAG SEQADV 3FBX HIS A 599 UNP Q3TCN2 EXPRESSION TAG SEQADV 3FBX HIS A 600 UNP Q3TCN2 EXPRESSION TAG SEQADV 3FBX HIS A 601 UNP Q3TCN2 EXPRESSION TAG SEQADV 3FBX HIS A 602 UNP Q3TCN2 EXPRESSION TAG SEQADV 3FBX HIS A 603 UNP Q3TCN2 EXPRESSION TAG SEQADV 3FBX HIS A 604 UNP Q3TCN2 EXPRESSION TAG SEQADV 3FBX GLY A 605 UNP Q3TCN2 EXPRESSION TAG SEQRES 1 A 559 LEU PRO THR LEU GLY PRO GLY TRP GLN ARG GLN ASN PRO SEQRES 2 A 559 ASP PRO PRO VAL SER ARG THR ARG SER LEU LEU LEU ASP SEQRES 3 A 559 ALA ALA SER GLY GLN LEU ARG LEU GLU ASP GLY PHE HIS SEQRES 4 A 559 PRO ASP ALA VAL ALA TRP ALA ASN LEU THR ASN ALA ILE SEQRES 5 A 559 ARG GLU THR GLY TRP ALA TYR LEU ASP LEU SER THR ASN SEQRES 6 A 559 GLY ARG TYR ASN ASP SER LEU GLN ALA TYR ALA ALA GLY SEQRES 7 A 559 VAL VAL GLU ALA SER VAL SER GLU GLU LEU ILE TYR MET SEQRES 8 A 559 HIS TRP MET ASN THR VAL VAL ASN TYR CYS GLY PRO PHE SEQRES 9 A 559 GLU TYR GLU VAL GLY TYR CYS GLU LYS LEU LYS ASN PHE SEQRES 10 A 559 LEU GLU ALA ASN LEU GLU TRP MET GLN ARG GLU MET GLU SEQRES 11 A 559 LEU ASN PRO ASP SER PRO TYR TRP HIS GLN VAL ARG LEU SEQRES 12 A 559 THR LEU LEU GLN LEU LYS GLY LEU GLU ASP SER TYR GLU SEQRES 13 A 559 GLY ARG LEU THR PHE PRO THR GLY ARG PHE THR ILE LYS SEQRES 14 A 559 PRO LEU GLY PHE LEU LEU LEU GLN ILE SER GLY ASP LEU SEQRES 15 A 559 GLU ASP LEU GLU PRO ALA LEU ASN LYS THR ASN THR LYS SEQRES 16 A 559 PRO SER LEU GLY SER GLY SER OCS SER ALA LEU ILE LYS SEQRES 17 A 559 LEU LEU PRO GLY GLY HIS ASP LEU LEU VAL ALA HIS ASN SEQRES 18 A 559 THR TRP ASN SER TYR GLN ASN MET LEU ARG ILE ILE LYS SEQRES 19 A 559 LYS TYR ARG LEU GLN PHE ARG GLU GLY PRO GLN GLU GLU SEQRES 20 A 559 TYR PRO LEU VAL ALA GLY ASN ASN LEU VAL PHE SER SER SEQRES 21 A 559 TYR PRO GLY THR ILE PHE SER GLY ASP ASP PHE TYR ILE SEQRES 22 A 559 LEU GLY SER GLY LEU VAL THR LEU GLU THR THR ILE GLY SEQRES 23 A 559 ASN LYS ASN PRO ALA LEU TRP LYS TYR VAL GLN PRO GLN SEQRES 24 A 559 GLY CYS VAL LEU GLU TRP ILE ARG ASN VAL VAL ALA ASN SEQRES 25 A 559 ARG LEU ALA LEU ASP GLY ALA THR TRP ALA ASP VAL PHE SEQRES 26 A 559 LYS ARG PHE ASN SER GLY THR TYR ASN ASN GLN TRP MET SEQRES 27 A 559 ILE VAL ASP TYR LYS ALA PHE LEU PRO ASN GLY PRO SER SEQRES 28 A 559 PRO GLY SER ARG VAL LEU THR ILE LEU GLU GLN ILE PRO SEQRES 29 A 559 GLY MET VAL VAL VAL ALA ASP LYS THR ALA GLU LEU TYR SEQRES 30 A 559 LYS THR THR TYR TRP ALA SER TYR ASN ILE PRO TYR PHE SEQRES 31 A 559 GLU THR VAL PHE ASN ALA SER GLY LEU GLN ALA LEU VAL SEQRES 32 A 559 ALA GLN TYR GLY ASP TRP PHE SER TYR THR LYS ASN PRO SEQRES 33 A 559 ARG ALA LYS ILE PHE GLN ARG ASP GLN SER LEU VAL GLU SEQRES 34 A 559 ASP MET ASP ALA MET VAL ARG LEU MET ARG TYR ASN ASP SEQRES 35 A 559 PHE LEU HIS ASP PRO LEU SER LEU CYS GLU ALA CYS ASN SEQRES 36 A 559 PRO LYS PRO ASN ALA GLU ASN ALA ILE SER ALA ARG SER SEQRES 37 A 559 ASP LEU ASN PRO ALA ASN GLY SER TYR PRO PHE GLN ALA SEQRES 38 A 559 LEU HIS GLN ARG ALA HIS GLY GLY ILE ASP VAL LYS VAL SEQRES 39 A 559 THR SER PHE THR LEU ALA LYS TYR MET SER MET LEU ALA SEQRES 40 A 559 ALA SER GLY PRO THR TRP ASP GLN CYS PRO PRO PHE GLN SEQRES 41 A 559 TRP SER LYS SER PRO PHE HIS SER MET LEU HIS MET GLY SEQRES 42 A 559 GLN PRO ASP LEU TRP MET PHE SER PRO ILE ARG VAL PRO SEQRES 43 A 559 TRP ASP GLY ARG GLY SER HIS HIS HIS HIS HIS HIS GLY MODRES 3FBX ASN A 115 ASN GLYCOSYLATION SITE MODRES 3FBX ASN A 236 ASN GLYCOSYLATION SITE MODRES 3FBX ASN A 441 ASN GLYCOSYLATION SITE MODRES 3FBX ASN A 520 ASN GLYCOSYLATION SITE MODRES 3FBX OCS A 249 CYS CYSTEINESULFONIC ACID HET OCS A 249 9 HET NAG B 1 14 HET NAG B 2 14 HET NAG A 21 14 HET NAG A 31 14 HET NAG A 41 14 HET PG4 A 606 13 HET PG4 A 23 13 HET XE A 607 1 HET GOL A 1 6 HET ACT A 608 4 HET GOL A 2 6 HET GOL A 3 6 HET PGE A 22 10 HET NA A 609 1 HETNAM OCS CYSTEINESULFONIC ACID HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM XE XENON HETNAM GOL GLYCEROL HETNAM ACT ACETATE ION HETNAM PGE TRIETHYLENE GLYCOL HETNAM NA SODIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 OCS C3 H7 N O5 S FORMUL 2 NAG 5(C8 H15 N O6) FORMUL 6 PG4 2(C8 H18 O5) FORMUL 8 XE XE FORMUL 9 GOL 3(C3 H8 O3) FORMUL 10 ACT C2 H3 O2 1- FORMUL 13 PGE C6 H14 O4 FORMUL 14 NA NA 1+ FORMUL 15 HOH *294(H2 O) HELIX 1 1 ALA A 97 GLY A 102 1 6 HELIX 2 2 ASN A 115 VAL A 143 1 29 HELIX 3 3 GLU A 153 ASN A 178 1 26 HELIX 4 4 SER A 181 GLU A 202 1 22 HELIX 5 5 PHE A 219 ILE A 224 1 6 HELIX 6 6 ILE A 224 LEU A 235 1 12 HELIX 7 7 PRO A 257 HIS A 260 5 4 HELIX 8 8 GLN A 273 MET A 275 5 3 HELIX 9 9 ASN A 335 VAL A 342 5 8 HELIX 10 10 LEU A 349 ALA A 361 1 13 HELIX 11 11 ASP A 363 LYS A 372 1 10 HELIX 12 12 LYS A 389 PHE A 391 5 3 HELIX 13 13 LYS A 418 THR A 426 1 9 HELIX 14 14 PHE A 436 SER A 443 1 8 HELIX 15 15 GLY A 444 GLY A 453 1 10 HELIX 16 16 ASP A 454 SER A 457 5 4 HELIX 17 17 ASN A 461 GLN A 471 1 11 HELIX 18 18 SER A 472 VAL A 474 5 3 HELIX 19 19 ASP A 476 ARG A 485 1 10 HELIX 20 20 ASP A 492 LEU A 496 5 5 HELIX 21 21 ARG A 513 ASN A 517 5 5 HELIX 22 22 PHE A 525 HIS A 529 5 5 HELIX 23 23 SER A 542 TYR A 548 1 7 HELIX 24 24 SER A 568 SER A 570 5 3 SHEET 1 A11 LEU A 78 ASP A 82 0 SHEET 2 A11 SER A 64 LEU A 71 -1 N LEU A 70 O ARG A 79 SHEET 3 A11 ALA A 90 ASN A 96 -1 O ALA A 90 N LEU A 69 SHEET 4 A11 ALA A 104 THR A 110 -1 O SER A 109 N TRP A 91 SHEET 5 A11 ILE A 278 ARG A 283 1 O ILE A 279 N LEU A 106 SHEET 6 A11 ASN A 301 SER A 306 -1 O PHE A 304 N LYS A 280 SHEET 7 A11 PHE A 317 LEU A 320 -1 O ILE A 319 N VAL A 303 SHEET 8 A11 LEU A 324 THR A 330 -1 O LEU A 324 N LEU A 320 SHEET 9 A11 ASN A 381 ASP A 387 -1 O MET A 384 N LEU A 327 SHEET 10 A11 LEU A 403 ILE A 409 -1 O LEU A 406 N TRP A 383 SHEET 11 A11 MET A 412 ASP A 417 -1 O ALA A 416 N ILE A 405 SHEET 1 B 6 TYR A 427 SER A 430 0 SHEET 2 B 6 SER A 250 LEU A 255 -1 N ALA A 251 O SER A 430 SHEET 3 B 6 LEU A 262 ASN A 267 -1 O LEU A 263 N LYS A 254 SHEET 4 B 6 ASP A 537 THR A 541 -1 O LYS A 539 N HIS A 266 SHEET 5 B 6 MET A 551 SER A 555 -1 O LEU A 552 N VAL A 540 SHEET 6 B 6 ILE A 589 VAL A 591 -1 O ILE A 589 N ALA A 553 SHEET 1 C 2 TRP A 269 SER A 271 0 SHEET 2 C 2 HIS A 533 GLY A 535 -1 O GLY A 534 N ASN A 270 SHEET 1 D 2 PHE A 565 GLN A 566 0 SHEET 2 D 2 LEU A 583 TRP A 584 -1 O TRP A 584 N PHE A 565 SSBOND 1 CYS A 147 CYS A 157 1555 1555 2.10 SSBOND 2 CYS A 497 CYS A 500 1555 1555 2.11 LINK C1 NAG A 21 ND2 ASN A 236 1555 1555 1.28 LINK C1 NAG A 31 ND2 ASN A 441 1555 1555 1.27 LINK C1 NAG A 41 ND2 ASN A 520 1555 1555 1.28 LINK ND2 ASN A 115 C1 NAG B 1 1555 1555 1.27 LINK C OCS A 249 N SER A 250 1555 1555 1.31 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.34 LINK OD3 OCS A 249 NA NA A 609 1555 1555 2.39 LINK O ASP A 315 NA NA A 609 1555 1555 2.89 LINK OE1 GLU A 328 NA NA A 609 1555 1555 2.80 LINK OE2 GLU A 328 NA NA A 609 1555 1555 2.99 LINK OG1 THR A 330 NA NA A 609 1555 1555 2.95 LINK OH TYR A 379 NA NA A 609 1555 1555 2.68 CISPEP 1 SER A 75 GLY A 76 0 -25.84 CISPEP 2 ASP A 315 ASP A 316 0 -5.41 CISPEP 3 ASN A 501 PRO A 502 0 3.33 CISPEP 4 VAL A 591 PRO A 592 0 20.36 CRYST1 148.804 89.672 64.954 90.00 98.67 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006720 0.000000 0.001025 0.00000 SCALE2 0.000000 0.011152 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015573 0.00000