HEADER LIGASE 21-NOV-08 3FCC TITLE CRYSTAL STRUCTURE OF DLTA PROTEIN IN COMPLEX WITH ATP AND MAGNESIUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: D-ALANINE--POLY(PHOSPHORIBITOL) LIGASE SUBUNIT 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: D-ALANINE-ACTIVATING ENZYME, DAE, D-ALANINE-D-ALANYL CARRIER COMPND 5 PROTEIN LIGASE, DCL; COMPND 6 EC: 6.1.1.13; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS CEREUS; SOURCE 3 ORGANISM_TAXID: 226900; SOURCE 4 STRAIN: ATCC 14579; SOURCE 5 GENE: BC_1372, DLTA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-ROSETTA2 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS DLTA, AMP-FORMING DOMAIN, D-ALANINE, ADENYLATION, D-ALANINE CARRIER KEYWDS 2 PROTEIN LIGASE, ATP COMPLEX, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR K.T.OSMAN,L.DU,Y.HE,Y.LUO REVDAT 4 06-SEP-23 3FCC 1 REMARK SEQADV LINK REVDAT 3 13-JUL-11 3FCC 1 VERSN REVDAT 2 30-JUN-09 3FCC 1 JRNL REVDAT 1 14-APR-09 3FCC 0 JRNL AUTH K.T.OSMAN,L.DU,Y.HE,Y.LUO JRNL TITL CRYSTAL STRUCTURE OF BACILLUS CEREUS D-ALANYL CARRIER JRNL TITL 2 PROTEIN LIGASE (DLTA) IN COMPLEX WITH ATP. JRNL REF J.MOL.BIOL. V. 388 345 2009 JRNL REFN ISSN 0022-2836 JRNL PMID 19324056 JRNL DOI 10.1016/J.JMB.2009.03.040 REMARK 2 REMARK 2 RESOLUTION. 2.32 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.32 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.4 REMARK 3 NUMBER OF REFLECTIONS : 25327 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.241 REMARK 3 FREE R VALUE : 0.286 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1748 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3943 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 133 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.280 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3FCC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-DEC-08. REMARK 100 THE DEPOSITION ID IS D_1000050414. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-OCT-08 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.20 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25327 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.3 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : 0.09200 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.23 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.29 REMARK 200 COMPLETENESS FOR SHELL (%) : 45.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.39800 REMARK 200 R SYM FOR SHELL (I) : 0.39800 REMARK 200 FOR SHELL : 4.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: 3DHV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05 M HEPES, 0.2 M POTASSIUM REMARK 280 CHLORIDE, 0.1 M MAGNESIUM CHLORIDE, 16% PEG 3350, 21% SUCROSE, REMARK 280 PH 7.2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 294.0K, PH REMARK 280 7.20 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 43.50000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 155 REMARK 465 THR A 156 REMARK 465 GLY A 157 REMARK 465 ASN A 158 REMARK 465 LEU A 505 REMARK 465 GLU A 506 REMARK 465 HIS A 507 REMARK 465 HIS A 508 REMARK 465 HIS A 509 REMARK 465 HIS A 510 REMARK 465 HIS A 511 REMARK 465 HIS A 512 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 23 -113.30 58.73 REMARK 500 HIS A 59 -91.91 -129.93 REMARK 500 THR A 106 -157.12 -96.44 REMARK 500 ASP A 112 125.83 -17.18 REMARK 500 GLU A 120 -103.00 31.14 REMARK 500 GLN A 183 -129.37 -115.95 REMARK 500 SER A 256 -165.56 -160.78 REMARK 500 LYS A 264 -13.21 -140.70 REMARK 500 VAL A 301 -68.60 73.93 REMARK 500 GLU A 335 -69.13 -20.90 REMARK 500 SER A 362 54.57 -178.56 REMARK 500 TYR A 423 -5.62 74.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 710 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ATP A 711 O1G REMARK 620 2 HOH A 791 O 74.4 REMARK 620 3 HOH A 792 O 154.2 118.7 REMARK 620 4 HOH A 793 O 75.7 107.4 116.7 REMARK 620 5 HOH A 794 O 86.1 73.2 77.8 160.6 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 710 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP A 711 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3DHV RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF DLTA PROTEIN IN COMPLEX WITH D-ALANINE REMARK 900 ADENYLATE REMARK 900 RELATED ID: 3FCE RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BACILLUS CEREUS D-ALANYL CARRIER PROTEIN REMARK 900 LIGASE DLTA IN COMPLEX WITH ATP DBREF 3FCC A 1 504 UNP Q81G39 DLTA_BACCR 1 504 SEQADV 3FCC LEU A 505 UNP Q81G39 EXPRESSION TAG SEQADV 3FCC GLU A 506 UNP Q81G39 EXPRESSION TAG SEQADV 3FCC HIS A 507 UNP Q81G39 EXPRESSION TAG SEQADV 3FCC HIS A 508 UNP Q81G39 EXPRESSION TAG SEQADV 3FCC HIS A 509 UNP Q81G39 EXPRESSION TAG SEQADV 3FCC HIS A 510 UNP Q81G39 EXPRESSION TAG SEQADV 3FCC HIS A 511 UNP Q81G39 EXPRESSION TAG SEQADV 3FCC HIS A 512 UNP Q81G39 EXPRESSION TAG SEQRES 1 A 512 MET LYS LEU LEU GLU GLN ILE GLU LYS TRP ALA ALA GLU SEQRES 2 A 512 THR PRO ASP GLN THR ALA PHE VAL TRP ARG ASP ALA LYS SEQRES 3 A 512 ILE THR TYR LYS GLN LEU LYS GLU ASP SER ASP ALA LEU SEQRES 4 A 512 ALA HIS TRP ILE SER SER GLU TYR PRO ASP ASP ARG SER SEQRES 5 A 512 PRO ILE MET VAL TYR GLY HIS MET GLN PRO GLU MET ILE SEQRES 6 A 512 ILE ASN PHE LEU GLY CYS VAL LYS ALA GLY HIS ALA TYR SEQRES 7 A 512 ILE PRO VAL ASP LEU SER ILE PRO ALA ASP ARG VAL GLN SEQRES 8 A 512 ARG ILE ALA GLU ASN SER GLY ALA LYS LEU LEU LEU SER SEQRES 9 A 512 ALA THR ALA VAL THR VAL THR ASP LEU PRO VAL ARG ILE SEQRES 10 A 512 VAL SER GLU ASP ASN LEU LYS ASP ILE PHE PHE THR HIS SEQRES 11 A 512 LYS GLY ASN THR PRO ASN PRO GLU HIS ALA VAL LYS GLY SEQRES 12 A 512 ASP GLU ASN PHE TYR ILE ILE TYR THR SER GLY SER THR SEQRES 13 A 512 GLY ASN PRO LYS GLY VAL GLN ILE THR TYR ASN CYS LEU SEQRES 14 A 512 VAL SER PHE THR LYS TRP ALA VAL GLU ASP PHE ASN LEU SEQRES 15 A 512 GLN THR GLY GLN VAL PHE LEU ASN GLN ALA PRO PHE SER SEQRES 16 A 512 PHE ASP LEU SER VAL MET ASP ILE TYR PRO SER LEU VAL SEQRES 17 A 512 THR GLY GLY THR LEU TRP ALA ILE ASP LYS ASP MET ILE SEQRES 18 A 512 ALA ARG PRO LYS ASP LEU PHE ALA SER LEU GLU GLN SER SEQRES 19 A 512 ASP ILE GLN VAL TRP THR SER THR PRO SER PHE ALA GLU SEQRES 20 A 512 MET CYS LEU MET GLU ALA SER PHE SER GLU SER MET LEU SEQRES 21 A 512 PRO ASN MET LYS THR PHE LEU PHE CYS GLY GLU VAL LEU SEQRES 22 A 512 PRO ASN GLU VAL ALA ARG LYS LEU ILE GLU ARG PHE PRO SEQRES 23 A 512 LYS ALA THR ILE MET ASN THR TYR GLY PRO THR GLU ALA SEQRES 24 A 512 THR VAL ALA VAL THR GLY ILE HIS VAL THR GLU GLU VAL SEQRES 25 A 512 LEU ASP GLN TYR LYS SER LEU PRO VAL GLY TYR CYS LYS SEQRES 26 A 512 SER ASP CYS ARG LEU LEU ILE MET LYS GLU ASP GLY THR SEQRES 27 A 512 ILE ALA PRO ASP GLY GLU LYS GLY GLU ILE VAL ILE VAL SEQRES 28 A 512 GLY PRO SER VAL SER VAL GLY TYR LEU GLY SER PRO GLU SEQRES 29 A 512 LEU THR GLU LYS ALA PHE THR MET ILE ASP GLY GLU ARG SEQRES 30 A 512 ALA TYR LYS THR GLY ASP ALA GLY TYR VAL GLU ASN GLY SEQRES 31 A 512 LEU LEU PHE TYR ASN GLY ARG LEU ASP PHE GLN ILE LYS SEQRES 32 A 512 LEU HIS GLY TYR ARG MET GLU LEU GLU GLU ILE GLU HIS SEQRES 33 A 512 HIS LEU ARG ALA CYS SER TYR VAL GLU GLY ALA VAL ILE SEQRES 34 A 512 VAL PRO ILE LYS LYS GLY GLU LYS TYR ASP TYR LEU LEU SEQRES 35 A 512 ALA VAL VAL VAL PRO GLY GLU HIS SER PHE GLU LYS GLU SEQRES 36 A 512 PHE LYS LEU THR SER ALA ILE LYS LYS GLU LEU ASN GLU SEQRES 37 A 512 ARG LEU PRO ASN TYR MET ILE PRO ARG LYS PHE MET TYR SEQRES 38 A 512 GLN SER SER ILE PRO MET THR PRO ASN GLY LYS VAL ASP SEQRES 39 A 512 ARG LYS LYS LEU LEU SER GLU VAL THR ALA LEU GLU HIS SEQRES 40 A 512 HIS HIS HIS HIS HIS HET MG A 710 1 HET ATP A 711 31 HETNAM MG MAGNESIUM ION HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE FORMUL 2 MG MG 2+ FORMUL 3 ATP C10 H16 N5 O13 P3 FORMUL 4 HOH *133(H2 O) HELIX 1 1 LYS A 2 THR A 14 1 13 HELIX 2 2 TYR A 29 TYR A 47 1 19 HELIX 3 3 GLN A 61 ALA A 74 1 14 HELIX 4 4 PRO A 86 SER A 97 1 12 HELIX 5 5 GLU A 120 HIS A 130 1 11 HELIX 6 6 ASN A 136 ALA A 140 5 5 HELIX 7 7 TYR A 166 PHE A 180 1 15 HELIX 8 8 PHE A 196 LEU A 198 5 3 HELIX 9 9 SER A 199 THR A 209 1 11 HELIX 10 10 ASP A 217 ARG A 223 1 7 HELIX 11 11 ARG A 223 ASP A 235 1 13 HELIX 12 12 THR A 242 MET A 251 1 10 HELIX 13 13 PRO A 274 PHE A 285 1 12 HELIX 14 14 PRO A 296 THR A 300 5 5 HELIX 15 15 THR A 309 TYR A 316 1 8 HELIX 16 16 GLU A 364 ALA A 369 1 6 HELIX 17 17 LEU A 411 CYS A 421 1 11 HELIX 18 18 LYS A 454 ASN A 467 1 14 HELIX 19 19 PRO A 471 ILE A 475 5 5 HELIX 20 20 ASP A 494 ALA A 504 1 11 SHEET 1 A 4 ALA A 25 THR A 28 0 SHEET 2 A 4 THR A 18 TRP A 22 -1 N ALA A 19 O ILE A 27 SHEET 3 A 4 THR A 212 ALA A 215 1 O LEU A 213 N ALA A 19 SHEET 4 A 4 VAL A 187 ASN A 190 1 N PHE A 188 O TRP A 214 SHEET 1 B 4 TYR A 78 ASP A 82 0 SHEET 2 B 4 ILE A 54 GLY A 58 1 N ILE A 54 O ILE A 79 SHEET 3 B 4 LEU A 101 SER A 104 1 O LEU A 103 N MET A 55 SHEET 4 B 4 ARG A 116 SER A 119 1 O VAL A 118 N LEU A 102 SHEET 1 C 2 ASN A 146 TYR A 151 0 SHEET 2 C 2 GLY A 161 THR A 165 -1 O ILE A 164 N PHE A 147 SHEET 1 D 9 VAL A 238 SER A 241 0 SHEET 2 D 9 THR A 265 PHE A 268 1 O LEU A 267 N TRP A 239 SHEET 3 D 9 THR A 289 TYR A 294 1 O THR A 289 N PHE A 266 SHEET 4 D 9 THR A 304 HIS A 307 -1 N THR A 304 O TYR A 294 SHEET 5 D 9 GLY A 322 CYS A 324 -1 O TYR A 323 N GLY A 305 SHEET 6 D 9 LEU A 391 ARG A 397 -1 O LEU A 392 N GLY A 322 SHEET 7 D 9 GLU A 376 GLU A 388 -1 N ALA A 384 O GLY A 396 SHEET 8 D 9 GLY A 346 VAL A 351 -1 N ILE A 348 O ASP A 383 SHEET 9 D 9 ARG A 329 MET A 333 -1 N MET A 333 O GLU A 347 SHEET 1 E 8 VAL A 238 SER A 241 0 SHEET 2 E 8 THR A 265 PHE A 268 1 O LEU A 267 N TRP A 239 SHEET 3 E 8 THR A 289 TYR A 294 1 O THR A 289 N PHE A 266 SHEET 4 E 8 THR A 304 HIS A 307 -1 N THR A 304 O TYR A 294 SHEET 5 E 8 GLY A 322 CYS A 324 -1 O TYR A 323 N GLY A 305 SHEET 6 E 8 LEU A 391 ARG A 397 -1 O LEU A 392 N GLY A 322 SHEET 7 E 8 GLU A 376 GLU A 388 -1 N ALA A 384 O GLY A 396 SHEET 8 E 8 PHE A 370 ILE A 373 -1 N THR A 371 O ALA A 378 SHEET 1 F 2 GLN A 401 LEU A 404 0 SHEET 2 F 2 TYR A 407 GLU A 410 -1 O TYR A 407 N LEU A 404 SHEET 1 G 3 VAL A 424 LYS A 434 0 SHEET 2 G 3 LYS A 437 PRO A 447 -1 O VAL A 446 N GLU A 425 SHEET 3 G 3 LYS A 478 TYR A 481 1 O LYS A 478 N ALA A 443 LINK MG MG A 710 O1G ATP A 711 1555 1555 2.48 LINK MG MG A 710 O HOH A 791 1555 1555 2.07 LINK MG MG A 710 O HOH A 792 1555 1555 2.37 LINK MG MG A 710 O HOH A 793 1555 1555 2.30 LINK MG MG A 710 O HOH A 794 1555 1555 2.38 SITE 1 AC1 5 ATP A 711 HOH A 791 HOH A 792 HOH A 793 SITE 2 AC1 5 HOH A 794 SITE 1 AC2 21 THR A 152 SER A 153 PHE A 196 GLY A 270 SITE 2 AC2 21 GLU A 271 VAL A 272 ASN A 292 THR A 293 SITE 3 AC2 21 TYR A 294 GLY A 295 THR A 297 ASP A 383 SITE 4 AC2 21 TYR A 394 ARG A 397 LYS A 492 MG A 710 SITE 5 AC2 21 HOH A 791 HOH A 792 HOH A 793 HOH A 806 SITE 6 AC2 21 HOH A 895 CRYST1 61.600 87.000 60.100 90.00 115.00 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016234 0.000000 0.007570 0.00000 SCALE2 0.000000 0.011494 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018359 0.00000 TER 3944 ALA A 504 HETATM 3945 MG MG A 710 23.863 -5.770 10.311 1.00 52.18 MG HETATM 3946 PG ATP A 711 21.492 -4.190 7.781 1.00 49.86 P HETATM 3947 O1G ATP A 711 22.518 -5.027 8.365 1.00 46.75 O HETATM 3948 O2G ATP A 711 21.955 -2.769 7.779 1.00 51.32 O HETATM 3949 O3G ATP A 711 21.224 -4.611 6.425 1.00 50.34 O HETATM 3950 PB ATP A 711 20.026 -5.266 9.890 1.00 41.05 P HETATM 3951 O1B ATP A 711 18.686 -5.128 10.511 1.00 44.06 O HETATM 3952 O2B ATP A 711 21.061 -4.946 10.853 1.00 42.53 O HETATM 3953 O3B ATP A 711 20.123 -4.284 8.643 1.00 45.88 O HETATM 3954 PA ATP A 711 19.348 -7.984 9.892 1.00 37.51 P HETATM 3955 O1A ATP A 711 18.069 -8.023 9.031 1.00 37.89 O HETATM 3956 O2A ATP A 711 20.114 -9.244 9.743 1.00 39.03 O HETATM 3957 O3A ATP A 711 20.267 -6.765 9.383 1.00 42.37 O HETATM 3958 O5' ATP A 711 18.936 -7.750 11.490 1.00 37.46 O HETATM 3959 C5' ATP A 711 19.850 -8.225 12.617 1.00 32.35 C HETATM 3960 C4' ATP A 711 19.849 -7.326 13.600 1.00 31.08 C HETATM 3961 O4' ATP A 711 18.504 -7.225 14.240 1.00 29.60 O HETATM 3962 C3' ATP A 711 20.836 -7.777 14.735 1.00 30.24 C HETATM 3963 O3' ATP A 711 22.130 -7.362 14.450 1.00 26.96 O HETATM 3964 C2' ATP A 711 20.112 -7.257 16.037 1.00 28.32 C HETATM 3965 O2' ATP A 711 20.616 -5.840 16.314 1.00 32.36 O HETATM 3966 C1' ATP A 711 18.636 -7.166 15.672 1.00 26.67 C HETATM 3967 N9 ATP A 711 17.960 -8.173 16.265 1.00 28.57 N HETATM 3968 C8 ATP A 711 17.740 -9.464 15.757 1.00 25.22 C HETATM 3969 N7 ATP A 711 17.056 -10.152 16.611 1.00 25.23 N HETATM 3970 C5 ATP A 711 16.793 -9.391 17.692 1.00 26.85 C HETATM 3971 C6 ATP A 711 16.113 -9.605 18.893 1.00 25.45 C HETATM 3972 N6 ATP A 711 15.537 -10.796 19.163 1.00 30.23 N HETATM 3973 N1 ATP A 711 16.028 -8.570 19.825 1.00 23.95 N HETATM 3974 C2 ATP A 711 16.625 -7.310 19.566 1.00 25.84 C HETATM 3975 N3 ATP A 711 17.297 -7.062 18.406 1.00 27.89 N HETATM 3976 C4 ATP A 711 17.358 -8.143 17.488 1.00 26.62 C HETATM 3977 O HOH A 791 25.035 -6.141 8.652 1.00 68.90 O HETATM 3978 O HOH A 792 24.250 -7.026 12.279 1.00 46.69 O HETATM 3979 O HOH A 793 23.721 -3.489 10.555 1.00 45.20 O HETATM 3980 O HOH A 794 23.367 -7.986 9.600 1.00 46.34 O HETATM 3981 O HOH A 801 3.145 1.977 28.235 1.00 17.41 O HETATM 3982 O HOH A 802 4.485 -28.535 10.865 1.00 24.52 O HETATM 3983 O HOH A 803 20.732 -15.827 6.604 1.00 23.15 O HETATM 3984 O HOH A 804 13.710 -6.912 1.741 1.00 24.60 O HETATM 3985 O HOH A 805 -2.268 -35.651 0.488 1.00 31.92 O HETATM 3986 O HOH A 806 14.339 -8.758 21.824 1.00 22.66 O HETATM 3987 O HOH A 807 13.978 -3.173 7.293 1.00 18.30 O HETATM 3988 O HOH A 808 5.436 -19.170 10.418 1.00 17.94 O HETATM 3989 O HOH A 809 12.521 -10.482 18.172 1.00 20.46 O HETATM 3990 O HOH A 810 25.948 -1.695 15.498 1.00 33.42 O HETATM 3991 O HOH A 811 14.334 -1.341 23.067 1.00 27.21 O HETATM 3992 O HOH A 812 7.664 -14.540 8.217 1.00 23.26 O HETATM 3993 O HOH A 813 3.084 -26.337 -13.957 1.00 32.97 O HETATM 3994 O HOH A 814 5.478 -25.638 3.333 1.00 25.88 O HETATM 3995 O HOH A 815 25.750 -20.623 -6.678 1.00 36.95 O HETATM 3996 O HOH A 816 6.775 -5.919 -0.151 1.00 39.50 O HETATM 3997 O HOH A 817 7.293 18.361 22.708 1.00 36.91 O HETATM 3998 O HOH A 818 7.559 2.946 6.053 1.00 31.51 O HETATM 3999 O HOH A 819 25.727 16.603 23.847 1.00 37.82 O HETATM 4000 O HOH A 820 21.778 -15.609 13.116 1.00 24.39 O HETATM 4001 O HOH A 821 1.402 -32.882 -13.227 1.00 29.61 O HETATM 4002 O HOH A 822 7.233 15.894 8.008 1.00 48.20 O HETATM 4003 O HOH A 823 0.117 -3.213 20.035 1.00 33.53 O HETATM 4004 O HOH A 824 -2.767 -28.014 9.527 1.00 36.19 O HETATM 4005 O HOH A 825 9.630 -9.461 -17.966 1.00 35.58 O HETATM 4006 O HOH A 826 -5.337 -6.507 0.011 1.00 33.38 O HETATM 4007 O HOH A 827 9.945 -11.783 -1.458 1.00 27.11 O HETATM 4008 O HOH A 828 16.414 20.022 26.356 1.00 39.33 O HETATM 4009 O HOH A 829 18.605 -10.792 -1.140 1.00 26.57 O HETATM 4010 O HOH A 830 37.498 -18.083 22.012 1.00 31.47 O HETATM 4011 O HOH A 831 0.378 -28.752 5.824 1.00 36.47 O HETATM 4012 O HOH A 832 36.109 -21.589 18.061 1.00 41.44 O HETATM 4013 O HOH A 833 11.250 -1.832 17.070 1.00 34.25 O HETATM 4014 O HOH A 834 3.229 -26.224 -17.653 1.00 36.55 O HETATM 4015 O HOH A 835 3.433 8.509 31.719 1.00 31.15 O HETATM 4016 O HOH A 836 31.039 -13.281 28.578 1.00 30.35 O HETATM 4017 O HOH A 837 12.568 -6.784 25.521 1.00 28.35 O HETATM 4018 O HOH A 838 1.830 -2.520 3.003 1.00 40.78 O HETATM 4019 O HOH A 839 -2.976 20.257 22.420 1.00 38.46 O HETATM 4020 O HOH A 840 6.406 -7.074 5.545 1.00 26.97 O HETATM 4021 O HOH A 841 13.684 -21.402 26.853 1.00 24.30 O HETATM 4022 O HOH A 842 13.905 -0.810 20.684 1.00 28.56 O HETATM 4023 O HOH A 843 29.398 -23.611 5.385 1.00 35.28 O HETATM 4024 O HOH A 844 24.304 -4.568 14.571 1.00 60.17 O HETATM 4025 O HOH A 845 -3.400 4.925 28.049 1.00 40.10 O HETATM 4026 O HOH A 846 1.745 -32.871 4.756 1.00 38.07 O HETATM 4027 O HOH A 847 -3.856 -21.867 -7.209 1.00 45.91 O HETATM 4028 O HOH A 848 -5.708 -25.832 7.347 1.00 45.64 O HETATM 4029 O HOH A 849 -12.703 -17.047 7.148 1.00 44.98 O HETATM 4030 O HOH A 850 4.942 18.432 18.783 1.00 47.12 O HETATM 4031 O HOH A 851 10.224 -3.519 18.739 1.00 31.24 O HETATM 4032 O HOH A 852 27.480 -16.399 33.555 1.00 36.91 O HETATM 4033 O HOH A 853 26.319 -20.976 35.024 1.00 45.48 O HETATM 4034 O HOH A 854 10.615 1.942 4.268 1.00 40.18 O HETATM 4035 O HOH A 855 16.240 -17.868 1.496 1.00 24.19 O HETATM 4036 O HOH A 856 2.271 -29.133 -11.461 1.00 54.06 O HETATM 4037 O HOH A 857 -1.611 20.249 19.821 1.00 37.55 O HETATM 4038 O HOH A 858 2.834 -11.894 -4.447 1.00 41.34 O HETATM 4039 O HOH A 859 28.606 -25.627 21.756 1.00 32.83 O HETATM 4040 O HOH A 860 28.879 -22.081 -3.757 1.00 39.85 O HETATM 4041 O HOH A 861 -4.321 12.181 21.857 1.00 36.13 O HETATM 4042 O HOH A 862 15.515 6.182 15.233 1.00 25.22 O HETATM 4043 O HOH A 863 17.034 15.482 24.145 1.00 29.07 O HETATM 4044 O HOH A 864 15.007 7.649 13.248 1.00 32.30 O HETATM 4045 O HOH A 865 10.437 -23.701 -22.316 1.00 36.71 O HETATM 4046 O HOH A 866 22.713 -32.032 -0.937 1.00 46.89 O HETATM 4047 O HOH A 867 21.731 -27.049 14.685 1.00 32.47 O HETATM 4048 O HOH A 868 20.089 -28.881 -1.935 1.00 34.14 O HETATM 4049 O HOH A 869 -0.350 -1.065 -0.680 1.00 36.40 O HETATM 4050 O HOH A 870 1.203 19.271 17.772 1.00 37.49 O HETATM 4051 O HOH A 871 16.096 -30.747 9.104 1.00 42.97 O HETATM 4052 O HOH A 872 15.845 9.021 6.406 1.00 41.29 O HETATM 4053 O HOH A 873 7.659 -3.816 18.034 1.00 30.08 O HETATM 4054 O HOH A 874 7.491 -0.212 15.845 1.00 34.63 O HETATM 4055 O HOH A 875 25.197 -28.457 9.127 1.00 34.67 O HETATM 4056 O HOH A 876 16.653 -5.800 24.253 1.00 30.10 O HETATM 4057 O HOH A 877 -3.144 -26.839 4.960 1.00 36.24 O HETATM 4058 O HOH A 878 13.505 15.773 4.817 1.00 41.64 O HETATM 4059 O HOH A 879 19.652 -34.359 17.356 1.00 46.84 O HETATM 4060 O HOH A 880 32.251 -23.230 11.518 1.00 35.94 O HETATM 4061 O HOH A 881 11.762 -20.017 29.376 1.00 36.72 O HETATM 4062 O HOH A 882 28.662 -24.144 7.716 1.00 38.63 O HETATM 4063 O HOH A 883 17.886 -8.753 26.013 1.00 30.45 O HETATM 4064 O HOH A 884 26.286 -23.003 -5.249 1.00 39.36 O HETATM 4065 O HOH A 885 14.253 -6.815 34.970 1.00 36.78 O HETATM 4066 O HOH A 886 -0.583 21.863 23.925 1.00 33.59 O HETATM 4067 O HOH A 887 19.938 -28.609 16.805 1.00 41.55 O HETATM 4068 O HOH A 888 9.343 -33.306 -13.363 1.00 34.87 O HETATM 4069 O HOH A 889 17.872 -10.799 5.761 1.00 33.60 O HETATM 4070 O HOH A 890 5.709 -32.739 20.893 1.00 40.32 O HETATM 4071 O HOH A 891 29.408 -16.337 26.254 1.00 45.57 O HETATM 4072 O HOH A 892 15.226 -32.339 10.940 1.00 49.26 O HETATM 4073 O HOH A 893 6.228 -6.346 2.528 1.00 50.62 O HETATM 4074 O HOH A 894 16.230 -7.409 31.843 1.00 49.64 O HETATM 4075 O HOH A 895 16.322 -7.683 11.605 1.00 38.42 O HETATM 4076 O HOH A 896 14.790 -7.411 24.308 1.00 34.02 O HETATM 4077 O HOH A 897 -5.177 11.922 31.051 1.00 36.73 O HETATM 4078 O HOH A 898 17.451 8.040 12.744 1.00 32.30 O HETATM 4079 O HOH A 899 -6.037 -20.881 14.007 1.00 50.30 O HETATM 4080 O HOH A 900 18.272 -8.978 0.426 1.00 40.01 O HETATM 4081 O HOH A 901 18.024 6.063 14.166 1.00 29.95 O HETATM 4082 O HOH A 902 25.131 -30.099 6.924 1.00 38.05 O HETATM 4083 O HOH A 903 11.302 -1.174 23.513 1.00 32.58 O HETATM 4084 O HOH A 904 -3.897 -24.286 4.190 1.00 43.65 O HETATM 4085 O HOH A 905 21.765 -20.536 12.676 1.00 37.05 O HETATM 4086 O HOH A 906 -0.794 -26.915 15.721 1.00 47.68 O HETATM 4087 O HOH A 907 -5.285 -23.351 6.074 1.00 31.37 O HETATM 4088 O HOH A 908 23.017 -17.400 -12.527 1.00 39.30 O HETATM 4089 O HOH A 909 9.180 -23.358 -24.824 1.00 37.67 O HETATM 4090 O HOH A 910 8.853 -1.326 28.153 1.00 35.06 O HETATM 4091 O HOH A 911 41.115 -15.151 11.377 1.00 60.93 O HETATM 4092 O HOH A 912 -3.432 4.641 17.255 1.00 32.83 O HETATM 4093 O HOH A 913 5.268 8.017 9.895 1.00 36.34 O HETATM 4094 O HOH A 914 15.873 -4.035 14.482 1.00 34.87 O HETATM 4095 O HOH A 915 23.505 -12.814 -19.228 1.00 45.67 O HETATM 4096 O HOH A 916 -8.115 -14.357 -1.716 1.00 45.30 O HETATM 4097 O HOH A 917 14.231 -16.280 1.668 1.00 38.25 O HETATM 4098 O HOH A 918 11.079 21.213 25.884 1.00 47.05 O HETATM 4099 O HOH A 919 5.143 -10.933 2.218 1.00 39.36 O HETATM 4100 O HOH A 920 15.737 -23.194 21.525 1.00 45.39 O HETATM 4101 O HOH A 921 14.322 -0.744 11.442 1.00 29.27 O HETATM 4102 O HOH A 922 -4.846 -19.997 21.334 1.00 43.49 O HETATM 4103 O HOH A 923 30.865 -22.998 18.553 1.00 46.22 O HETATM 4104 O HOH A 924 32.853 -28.690 6.146 1.00 43.85 O HETATM 4105 O HOH A 925 31.376 -14.393 26.285 1.00 44.62 O HETATM 4106 O HOH A 926 42.283 -18.423 13.822 1.00 52.60 O HETATM 4107 O HOH A 927 28.862 -11.169 29.385 1.00 42.84 O HETATM 4108 O HOH A 928 20.354 -24.223 23.715 1.00 33.67 O HETATM 4109 O HOH A 929 -0.203 22.917 19.761 1.00 41.40 O CONECT 3945 3947 3977 3978 3979 CONECT 3945 3980 CONECT 3946 3947 3948 3949 3953 CONECT 3947 3945 3946 CONECT 3948 3946 CONECT 3949 3946 CONECT 3950 3951 3952 3953 3957 CONECT 3951 3950 CONECT 3952 3950 CONECT 3953 3946 3950 CONECT 3954 3955 3956 3957 3958 CONECT 3955 3954 CONECT 3956 3954 CONECT 3957 3950 3954 CONECT 3958 3954 3959 CONECT 3959 3958 3960 CONECT 3960 3959 3961 3962 CONECT 3961 3960 3966 CONECT 3962 3960 3963 3964 CONECT 3963 3962 CONECT 3964 3962 3965 3966 CONECT 3965 3964 CONECT 3966 3961 3964 3967 CONECT 3967 3966 3968 3976 CONECT 3968 3967 3969 CONECT 3969 3968 3970 CONECT 3970 3969 3971 3976 CONECT 3971 3970 3972 3973 CONECT 3972 3971 CONECT 3973 3971 3974 CONECT 3974 3973 3975 CONECT 3975 3974 3976 CONECT 3976 3967 3970 3975 CONECT 3977 3945 CONECT 3978 3945 CONECT 3979 3945 CONECT 3980 3945 MASTER 290 0 2 20 32 0 8 6 4108 1 37 40 END