data_3FCF # _entry.id 3FCF # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3FCF RCSB RCSB050417 WWPDB D_1000050417 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3FCI . unspecified PDB 3FCK . unspecified PDB 3FCL . unspecified # _pdbx_database_status.entry_id 3FCF _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2008-11-21 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Bianchet, M.A.' 1 'Chung, S.' 2 'Parker, J.B.' 3 'Amzel, L.M.' 4 'Stivers, J.T.' 5 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Impact of linker strain and flexibility in the design of a fragment-based inhibitor' Nat.Chem.Biol. 5 407 413 2009 ? US 1552-4450 ? ? 19396178 10.1038/nchembio.163 1 'Uracil-directed ligand tethering: an efficient strategy for uracil DNA glycosylase (UNG) inhibitor development' J.Am.Chem.Soc. 127 17412 ? 2005 JACSAT US 0002-7863 0004 ? ? ? 2 'Mimicking damaged DNA with a small molecule inhibitor of human UNG2.' 'Nucleic Acids Res.' 34 5872 ? 2006 NARHAD UK 0305-1048 0389 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Chung, S.' 1 primary 'Parker, J.B.' 2 primary 'Bianchet, M.' 3 primary 'Amzel, L.M.' 4 primary 'Stivers, J.T.' 5 1 'Jiang, T.L.' 6 1 'Krosky, D.J.' 7 1 'Seiple, L.' 8 1 'Stivers, J.T.' 9 2 'Krosky, D.J.' 10 2 'Bianchet, M.A.' 11 2 'Seiple, L.' 12 2 'Chung, S.' 13 2 'Amzel, L.M.' 14 2 'Stivers, J.T.' 15 # _cell.length_a 43.251 _cell.length_b 69.260 _cell.length_c 70.097 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 3FCF _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.entry_id 3FCF _symmetry.Int_Tables_number 19 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Uracil-DNA glycosylase' 25544.137 1 3.2.2.- ? ? ? 2 non-polymer syn '3-[(1E,7E)-8-(2,6-dioxo-1,2,3,6-tetrahydropyrimidin-4-yl)-3,6-dioxa-2,7-diazaocta-1,7-dien-1-yl]benzoic acid' 346.295 1 ? ? ? ? 3 non-polymer syn 'THIOCYANATE ION' 58.082 2 ? ? ? ? 4 water nat water 18.015 179 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name UDG # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MEFFGESWKKHLSGEFGKPYFIKLMGFVAEERKHYTVYPPPHQVFTWTQMCDIKDVKVVILGQDPYHGPNQAHGLCFSVQ RPVPPPPSLENIYKELSTDIEDFVHPGHGDLSGWAKQGVLLLNAVLTVRAHQANSHKERGWEQFTDAVVSWLNQNSNGLV FLLWGSYAQKKGSAIDRKRHHVLQTAHPSPLSVYRGFFGCRHFSKTNELLQKSGKKPIDWKEL ; _entity_poly.pdbx_seq_one_letter_code_can ;MEFFGESWKKHLSGEFGKPYFIKLMGFVAEERKHYTVYPPPHQVFTWTQMCDIKDVKVVILGQDPYHGPNQAHGLCFSVQ RPVPPPPSLENIYKELSTDIEDFVHPGHGDLSGWAKQGVLLLNAVLTVRAHQANSHKERGWEQFTDAVVSWLNQNSNGLV FLLWGSYAQKKGSAIDRKRHHVLQTAHPSPLSVYRGFFGCRHFSKTNELLQKSGKKPIDWKEL ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLU n 1 3 PHE n 1 4 PHE n 1 5 GLY n 1 6 GLU n 1 7 SER n 1 8 TRP n 1 9 LYS n 1 10 LYS n 1 11 HIS n 1 12 LEU n 1 13 SER n 1 14 GLY n 1 15 GLU n 1 16 PHE n 1 17 GLY n 1 18 LYS n 1 19 PRO n 1 20 TYR n 1 21 PHE n 1 22 ILE n 1 23 LYS n 1 24 LEU n 1 25 MET n 1 26 GLY n 1 27 PHE n 1 28 VAL n 1 29 ALA n 1 30 GLU n 1 31 GLU n 1 32 ARG n 1 33 LYS n 1 34 HIS n 1 35 TYR n 1 36 THR n 1 37 VAL n 1 38 TYR n 1 39 PRO n 1 40 PRO n 1 41 PRO n 1 42 HIS n 1 43 GLN n 1 44 VAL n 1 45 PHE n 1 46 THR n 1 47 TRP n 1 48 THR n 1 49 GLN n 1 50 MET n 1 51 CYS n 1 52 ASP n 1 53 ILE n 1 54 LYS n 1 55 ASP n 1 56 VAL n 1 57 LYS n 1 58 VAL n 1 59 VAL n 1 60 ILE n 1 61 LEU n 1 62 GLY n 1 63 GLN n 1 64 ASP n 1 65 PRO n 1 66 TYR n 1 67 HIS n 1 68 GLY n 1 69 PRO n 1 70 ASN n 1 71 GLN n 1 72 ALA n 1 73 HIS n 1 74 GLY n 1 75 LEU n 1 76 CYS n 1 77 PHE n 1 78 SER n 1 79 VAL n 1 80 GLN n 1 81 ARG n 1 82 PRO n 1 83 VAL n 1 84 PRO n 1 85 PRO n 1 86 PRO n 1 87 PRO n 1 88 SER n 1 89 LEU n 1 90 GLU n 1 91 ASN n 1 92 ILE n 1 93 TYR n 1 94 LYS n 1 95 GLU n 1 96 LEU n 1 97 SER n 1 98 THR n 1 99 ASP n 1 100 ILE n 1 101 GLU n 1 102 ASP n 1 103 PHE n 1 104 VAL n 1 105 HIS n 1 106 PRO n 1 107 GLY n 1 108 HIS n 1 109 GLY n 1 110 ASP n 1 111 LEU n 1 112 SER n 1 113 GLY n 1 114 TRP n 1 115 ALA n 1 116 LYS n 1 117 GLN n 1 118 GLY n 1 119 VAL n 1 120 LEU n 1 121 LEU n 1 122 LEU n 1 123 ASN n 1 124 ALA n 1 125 VAL n 1 126 LEU n 1 127 THR n 1 128 VAL n 1 129 ARG n 1 130 ALA n 1 131 HIS n 1 132 GLN n 1 133 ALA n 1 134 ASN n 1 135 SER n 1 136 HIS n 1 137 LYS n 1 138 GLU n 1 139 ARG n 1 140 GLY n 1 141 TRP n 1 142 GLU n 1 143 GLN n 1 144 PHE n 1 145 THR n 1 146 ASP n 1 147 ALA n 1 148 VAL n 1 149 VAL n 1 150 SER n 1 151 TRP n 1 152 LEU n 1 153 ASN n 1 154 GLN n 1 155 ASN n 1 156 SER n 1 157 ASN n 1 158 GLY n 1 159 LEU n 1 160 VAL n 1 161 PHE n 1 162 LEU n 1 163 LEU n 1 164 TRP n 1 165 GLY n 1 166 SER n 1 167 TYR n 1 168 ALA n 1 169 GLN n 1 170 LYS n 1 171 LYS n 1 172 GLY n 1 173 SER n 1 174 ALA n 1 175 ILE n 1 176 ASP n 1 177 ARG n 1 178 LYS n 1 179 ARG n 1 180 HIS n 1 181 HIS n 1 182 VAL n 1 183 LEU n 1 184 GLN n 1 185 THR n 1 186 ALA n 1 187 HIS n 1 188 PRO n 1 189 SER n 1 190 PRO n 1 191 LEU n 1 192 SER n 1 193 VAL n 1 194 TYR n 1 195 ARG n 1 196 GLY n 1 197 PHE n 1 198 PHE n 1 199 GLY n 1 200 CYS n 1 201 ARG n 1 202 HIS n 1 203 PHE n 1 204 SER n 1 205 LYS n 1 206 THR n 1 207 ASN n 1 208 GLU n 1 209 LEU n 1 210 LEU n 1 211 GLN n 1 212 LYS n 1 213 SER n 1 214 GLY n 1 215 LYS n 1 216 LYS n 1 217 PRO n 1 218 ILE n 1 219 ASP n 1 220 TRP n 1 221 LYS n 1 222 GLU n 1 223 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'UNG, DGU, UNG1, UNG15' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code UNG_HUMAN _struct_ref.pdbx_db_accession P13051 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;FGESWKKHLSGEFGKPYFIKLMGFVAEERKHYTVYPPPHQVFTWTQMCDIKDVKVVILGQDPYHGPNQAHGLCFSVQRPV PPPPSLENIYKELSTDIEDFVHPGHGDLSGWAKQGVLLLNAVLTVRAHQANSHKERGWEQFTDAVVSWLNQNSNGLVFLL WGSYAQKKGSAIDRKRHHVLQTAHPSPLSVYRGFFGCRHFSKTNELLQKSGKKPIDWKEL ; _struct_ref.pdbx_align_begin 94 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3FCF _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 223 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P13051 _struct_ref_seq.db_align_beg 94 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 313 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 85 _struct_ref_seq.pdbx_auth_seq_align_end 304 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3FCF MET A 1 ? UNP P13051 ? ? 'EXPRESSION TAG' 82 1 1 3FCF GLU A 2 ? UNP P13051 ? ? 'EXPRESSION TAG' 83 2 1 3FCF PHE A 3 ? UNP P13051 ? ? 'EXPRESSION TAG' 84 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 FCF non-polymer . '3-[(1E,7E)-8-(2,6-dioxo-1,2,3,6-tetrahydropyrimidin-4-yl)-3,6-dioxa-2,7-diazaocta-1,7-dien-1-yl]benzoic acid' ? 'C15 H14 N4 O6' 346.295 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SCN non-polymer . 'THIOCYANATE ION' ? 'C N S -1' 58.082 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3FCF _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.06 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 40.15 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 8.0 _exptl_crystal_grow.temp 295 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details ;1 Microliter of the solution: 0.001 M UNG2 0.05 M TRIS-OAC pH 7.0 0.15 M NACL 0.001 M DTT 0.003 M inhibitor, was mixed with equal amount of the solution containing 0.16 M KSCN AND 22% PEG 3350 , VAPOR DIFFUSION, HANGING DROP, temperature 295K ; _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 93 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV' _diffrn_detector.pdbx_collection_date 2007-10-02 _diffrn_detector.details MIRROR # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator MIRROR _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RUH3R' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? # _reflns.entry_id 3FCF _reflns.d_resolution_high 1.830 _reflns.d_resolution_low 50.000 _reflns.number_obs 15237 _reflns.pdbx_Rmerge_I_obs 0.053 _reflns.pdbx_chi_squared 3.286 _reflns.pdbx_redundancy 5.200 _reflns.percent_possible_obs 79.300 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_netI_over_sigmaI ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal 1.83 1.90 ? ? ? 0.147 ? ? 2.114 1.70 ? 238 12.70 ? 1 1.90 1.97 ? ? ? 0.124 ? ? 2.384 2.20 ? 798 42.50 ? 2 1.97 2.06 ? ? ? 0.100 ? ? 2.620 2.60 ? 1312 68.90 ? 3 2.06 2.17 ? ? ? 0.088 ? ? 2.821 3.40 ? 1679 89.00 ? 4 2.17 2.31 ? ? ? 0.076 ? ? 3.083 5.30 ? 1860 98.50 ? 5 2.31 2.48 ? ? ? 0.069 ? ? 3.095 6.50 ? 1875 98.80 ? 6 2.48 2.73 ? ? ? 0.059 ? ? 3.161 6.50 ? 1859 96.60 ? 7 2.73 3.13 ? ? ? 0.052 ? ? 3.350 6.30 ? 1849 96.30 ? 8 3.13 3.94 ? ? ? 0.047 ? ? 3.533 5.90 ? 1815 92.40 ? 9 3.94 50.00 ? ? ? 0.048 ? ? 4.002 5.60 ? 1952 94.30 ? 10 # _refine.entry_id 3FCF _refine.ls_d_res_high 1.840 _refine.ls_d_res_low 36.81 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 80.040 _refine.ls_number_reflns_obs 15197 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.ls_R_factor_obs 0.200 _refine.ls_R_factor_R_work 0.198 _refine.ls_wR_factor_R_work 0.210 _refine.ls_R_factor_R_free 0.248 _refine.ls_wR_factor_R_free 0.264 _refine.ls_percent_reflns_R_free 4.900 _refine.ls_number_reflns_R_free 749 _refine.B_iso_mean 23.692 _refine.aniso_B[1][1] 0.120 _refine.aniso_B[2][2] -0.890 _refine.aniso_B[3][3] 0.770 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.940 _refine.correlation_coeff_Fo_to_Fc_free 0.906 _refine.overall_SU_R_Cruickshank_DPI 0.226 _refine.overall_SU_R_free 0.187 _refine.pdbx_overall_ESU_R 0.226 _refine.pdbx_overall_ESU_R_Free 0.187 _refine.overall_SU_ML 0.104 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.overall_FOM_work_R_set 0.844 _refine.B_iso_max 60.43 _refine.B_iso_min 15.13 _refine.occupancy_max 1.00 _refine.occupancy_min 0.50 _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.overall_SU_B ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1825 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 31 _refine_hist.number_atoms_solvent 179 _refine_hist.number_atoms_total 2035 _refine_hist.d_res_high 1.840 _refine_hist.d_res_low 36.81 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1918 0.007 0.021 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2598 1.052 1.944 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 226 5.192 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 90 35.951 23.556 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 311 12.420 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 9 8.884 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 259 0.076 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1501 0.003 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 906 0.177 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 1255 0.305 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 194 0.121 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 48 0.142 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 9 0.163 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1148 0.393 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1818 0.687 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 886 1.007 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 780 1.612 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.84 _refine_ls_shell.d_res_low 1.885 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 11.880 _refine_ls_shell.number_reflns_R_work 154 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.229 _refine_ls_shell.R_factor_R_free 0.373 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 11 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 165 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3FCF _struct.title 'Complex of UNG2 and a fragment-based designed inhibitor' _struct.pdbx_descriptor 'Complex of UNG2 and a fragment-based designed inhibitor' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3FCF _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text ;DNA REPAIR, URACIL, URACIL DNA GLYCOSYLASE, Alternative splicing, Disease mutation, DNA damage, Glycosidase, Host-virus interaction, Hydrolase, Mitochondrion, Nucleus, Phosphoprotein, Transit peptide ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 5 ? SER A 13 ? GLY A 86 SER A 94 1 ? 9 HELX_P HELX_P2 2 GLY A 14 ? PHE A 16 ? GLY A 95 PHE A 97 5 ? 3 HELX_P HELX_P3 3 LYS A 18 ? TYR A 35 ? LYS A 99 TYR A 116 1 ? 18 HELX_P HELX_P4 4 PRO A 40 ? VAL A 44 ? PRO A 121 VAL A 125 5 ? 5 HELX_P HELX_P5 5 PHE A 45 ? GLN A 49 ? PHE A 126 GLN A 130 5 ? 5 HELX_P HELX_P6 6 ASP A 52 ? VAL A 56 ? ASP A 133 VAL A 137 5 ? 5 HELX_P HELX_P7 7 PRO A 86 ? ILE A 100 ? PRO A 167 ILE A 181 1 ? 15 HELX_P HELX_P8 8 LEU A 111 ? LYS A 116 ? LEU A 192 LYS A 197 1 ? 6 HELX_P HELX_P9 9 GLY A 140 ? SER A 156 ? GLY A 221 SER A 237 1 ? 17 HELX_P HELX_P10 10 GLY A 165 ? GLY A 172 ? GLY A 246 GLY A 253 1 ? 8 HELX_P HELX_P11 11 SER A 192 ? GLY A 196 ? SER A 273 GLY A 277 5 ? 5 HELX_P HELX_P12 12 ARG A 201 ? SER A 213 ? ARG A 282 SER A 294 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 TYR 38 A . ? TYR 119 A PRO 39 A ? PRO 120 A 1 -9.03 2 ARG 81 A . ? ARG 162 A PRO 82 A ? PRO 163 A 1 0.08 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? parallel B 2 3 ? parallel B 3 4 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 37 ? TYR A 38 ? VAL A 118 TYR A 119 A 2 VAL A 128 ? ARG A 129 ? VAL A 209 ARG A 210 B 1 VAL A 119 ? ASN A 123 ? VAL A 200 ASN A 204 B 2 VAL A 58 ? GLY A 62 ? VAL A 139 GLY A 143 B 3 VAL A 160 ? TRP A 164 ? VAL A 241 TRP A 245 B 4 HIS A 181 ? THR A 185 ? HIS A 262 THR A 266 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N TYR A 38 ? N TYR A 119 O VAL A 128 ? O VAL A 209 B 1 2 O LEU A 120 ? O LEU A 201 N VAL A 58 ? N VAL A 139 B 2 3 N VAL A 59 ? N VAL A 140 O LEU A 162 ? O LEU A 243 B 3 4 N PHE A 161 ? N PHE A 242 O HIS A 181 ? O HIS A 262 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 20 'BINDING SITE FOR RESIDUE FCF A 1' AC2 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE SCN A 305' AC3 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE SCN A 2' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 20 SCN D . ? SCN A 2 . ? 1_555 ? 2 AC1 20 HOH E . ? HOH A 40 . ? 1_555 ? 3 AC1 20 GLY A 62 ? GLY A 143 . ? 1_555 ? 4 AC1 20 GLN A 63 ? GLN A 144 . ? 1_555 ? 5 AC1 20 ASP A 64 ? ASP A 145 . ? 1_555 ? 6 AC1 20 TYR A 66 ? TYR A 147 . ? 1_555 ? 7 AC1 20 CYS A 76 ? CYS A 157 . ? 1_555 ? 8 AC1 20 PHE A 77 ? PHE A 158 . ? 1_555 ? 9 AC1 20 SER A 88 ? SER A 169 . ? 1_555 ? 10 AC1 20 ASN A 123 ? ASN A 204 . ? 1_555 ? 11 AC1 20 GLY A 165 ? GLY A 246 . ? 1_555 ? 12 AC1 20 SER A 166 ? SER A 247 . ? 1_555 ? 13 AC1 20 TYR A 167 ? TYR A 248 . ? 1_555 ? 14 AC1 20 HIS A 187 ? HIS A 268 . ? 1_555 ? 15 AC1 20 SER A 189 ? SER A 270 . ? 1_555 ? 16 AC1 20 SER A 192 ? SER A 273 . ? 1_555 ? 17 AC1 20 HOH E . ? HOH A 306 . ? 1_555 ? 18 AC1 20 HOH E . ? HOH A 364 . ? 1_555 ? 19 AC1 20 HOH E . ? HOH A 384 . ? 1_555 ? 20 AC1 20 HOH E . ? HOH A 398 . ? 1_555 ? 21 AC2 4 HOH E . ? HOH A 44 . ? 2_455 ? 22 AC2 4 MET A 25 ? MET A 106 . ? 1_555 ? 23 AC2 4 VAL A 28 ? VAL A 109 . ? 1_555 ? 24 AC2 4 ARG A 32 ? ARG A 113 . ? 1_555 ? 25 AC3 5 FCF B . ? FCF A 1 . ? 1_555 ? 26 AC3 5 TYR A 66 ? TYR A 147 . ? 1_555 ? 27 AC3 5 HIS A 67 ? HIS A 148 . ? 1_555 ? 28 AC3 5 GLY A 68 ? GLY A 149 . ? 1_555 ? 29 AC3 5 GLN A 71 ? GLN A 152 . ? 1_555 ? # _atom_sites.entry_id 3FCF _atom_sites.fract_transf_matrix[1][1] 0.023121 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014438 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014266 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 82 82 MET MET A . n A 1 2 GLU 2 83 83 GLU GLU A . n A 1 3 PHE 3 84 84 PHE PHE A . n A 1 4 PHE 4 85 85 PHE PHE A . n A 1 5 GLY 5 86 86 GLY GLY A . n A 1 6 GLU 6 87 87 GLU GLU A . n A 1 7 SER 7 88 88 SER SER A . n A 1 8 TRP 8 89 89 TRP TRP A . n A 1 9 LYS 9 90 90 LYS LYS A . n A 1 10 LYS 10 91 91 LYS LYS A . n A 1 11 HIS 11 92 92 HIS HIS A . n A 1 12 LEU 12 93 93 LEU LEU A . n A 1 13 SER 13 94 94 SER SER A . n A 1 14 GLY 14 95 95 GLY GLY A . n A 1 15 GLU 15 96 96 GLU GLU A . n A 1 16 PHE 16 97 97 PHE PHE A . n A 1 17 GLY 17 98 98 GLY GLY A . n A 1 18 LYS 18 99 99 LYS LYS A . n A 1 19 PRO 19 100 100 PRO PRO A . n A 1 20 TYR 20 101 101 TYR TYR A . n A 1 21 PHE 21 102 102 PHE PHE A . n A 1 22 ILE 22 103 103 ILE ILE A . n A 1 23 LYS 23 104 104 LYS LYS A . n A 1 24 LEU 24 105 105 LEU LEU A . n A 1 25 MET 25 106 106 MET MET A . n A 1 26 GLY 26 107 107 GLY GLY A . n A 1 27 PHE 27 108 108 PHE PHE A . n A 1 28 VAL 28 109 109 VAL VAL A . n A 1 29 ALA 29 110 110 ALA ALA A . n A 1 30 GLU 30 111 111 GLU GLU A . n A 1 31 GLU 31 112 112 GLU GLU A . n A 1 32 ARG 32 113 113 ARG ARG A . n A 1 33 LYS 33 114 114 LYS LYS A . n A 1 34 HIS 34 115 115 HIS HIS A . n A 1 35 TYR 35 116 116 TYR TYR A . n A 1 36 THR 36 117 117 THR THR A . n A 1 37 VAL 37 118 118 VAL VAL A . n A 1 38 TYR 38 119 119 TYR TYR A . n A 1 39 PRO 39 120 120 PRO PRO A . n A 1 40 PRO 40 121 121 PRO PRO A . n A 1 41 PRO 41 122 122 PRO PRO A . n A 1 42 HIS 42 123 123 HIS HIS A . n A 1 43 GLN 43 124 124 GLN GLN A . n A 1 44 VAL 44 125 125 VAL VAL A . n A 1 45 PHE 45 126 126 PHE PHE A . n A 1 46 THR 46 127 127 THR THR A . n A 1 47 TRP 47 128 128 TRP TRP A . n A 1 48 THR 48 129 129 THR THR A . n A 1 49 GLN 49 130 130 GLN GLN A . n A 1 50 MET 50 131 131 MET MET A . n A 1 51 CYS 51 132 132 CYS CYS A . n A 1 52 ASP 52 133 133 ASP ASP A . n A 1 53 ILE 53 134 134 ILE ILE A . n A 1 54 LYS 54 135 135 LYS LYS A . n A 1 55 ASP 55 136 136 ASP ASP A . n A 1 56 VAL 56 137 137 VAL VAL A . n A 1 57 LYS 57 138 138 LYS LYS A . n A 1 58 VAL 58 139 139 VAL VAL A . n A 1 59 VAL 59 140 140 VAL VAL A . n A 1 60 ILE 60 141 141 ILE ILE A . n A 1 61 LEU 61 142 142 LEU LEU A . n A 1 62 GLY 62 143 143 GLY GLY A . n A 1 63 GLN 63 144 144 GLN GLN A . n A 1 64 ASP 64 145 145 ASP ASP A . n A 1 65 PRO 65 146 146 PRO PRO A . n A 1 66 TYR 66 147 147 TYR TYR A . n A 1 67 HIS 67 148 148 HIS HIS A . n A 1 68 GLY 68 149 149 GLY GLY A . n A 1 69 PRO 69 150 150 PRO PRO A . n A 1 70 ASN 70 151 151 ASN ASN A . n A 1 71 GLN 71 152 152 GLN GLN A . n A 1 72 ALA 72 153 153 ALA ALA A . n A 1 73 HIS 73 154 154 HIS HIS A . n A 1 74 GLY 74 155 155 GLY GLY A . n A 1 75 LEU 75 156 156 LEU LEU A . n A 1 76 CYS 76 157 157 CYS CYS A . n A 1 77 PHE 77 158 158 PHE PHE A . n A 1 78 SER 78 159 159 SER SER A . n A 1 79 VAL 79 160 160 VAL VAL A . n A 1 80 GLN 80 161 161 GLN GLN A . n A 1 81 ARG 81 162 162 ARG ARG A . n A 1 82 PRO 82 163 163 PRO PRO A . n A 1 83 VAL 83 164 164 VAL VAL A . n A 1 84 PRO 84 165 165 PRO PRO A . n A 1 85 PRO 85 166 166 PRO PRO A . n A 1 86 PRO 86 167 167 PRO PRO A . n A 1 87 PRO 87 168 168 PRO PRO A . n A 1 88 SER 88 169 169 SER SER A . n A 1 89 LEU 89 170 170 LEU LEU A . n A 1 90 GLU 90 171 171 GLU GLU A . n A 1 91 ASN 91 172 172 ASN ASN A . n A 1 92 ILE 92 173 173 ILE ILE A . n A 1 93 TYR 93 174 174 TYR TYR A . n A 1 94 LYS 94 175 175 LYS LYS A . n A 1 95 GLU 95 176 176 GLU GLU A . n A 1 96 LEU 96 177 177 LEU LEU A . n A 1 97 SER 97 178 178 SER SER A . n A 1 98 THR 98 179 179 THR THR A . n A 1 99 ASP 99 180 180 ASP ASP A . n A 1 100 ILE 100 181 181 ILE ILE A . n A 1 101 GLU 101 182 182 GLU GLU A . n A 1 102 ASP 102 183 183 ASP ASP A . n A 1 103 PHE 103 184 184 PHE PHE A . n A 1 104 VAL 104 185 185 VAL VAL A . n A 1 105 HIS 105 186 186 HIS HIS A . n A 1 106 PRO 106 187 187 PRO PRO A . n A 1 107 GLY 107 188 188 GLY GLY A . n A 1 108 HIS 108 189 189 HIS HIS A . n A 1 109 GLY 109 190 190 GLY GLY A . n A 1 110 ASP 110 191 191 ASP ASP A . n A 1 111 LEU 111 192 192 LEU LEU A . n A 1 112 SER 112 193 193 SER SER A . n A 1 113 GLY 113 194 194 GLY GLY A . n A 1 114 TRP 114 195 195 TRP TRP A . n A 1 115 ALA 115 196 196 ALA ALA A . n A 1 116 LYS 116 197 197 LYS LYS A . n A 1 117 GLN 117 198 198 GLN GLN A . n A 1 118 GLY 118 199 199 GLY GLY A . n A 1 119 VAL 119 200 200 VAL VAL A . n A 1 120 LEU 120 201 201 LEU LEU A . n A 1 121 LEU 121 202 202 LEU LEU A . n A 1 122 LEU 122 203 203 LEU LEU A . n A 1 123 ASN 123 204 204 ASN ASN A . n A 1 124 ALA 124 205 205 ALA ALA A . n A 1 125 VAL 125 206 206 VAL VAL A . n A 1 126 LEU 126 207 207 LEU LEU A . n A 1 127 THR 127 208 208 THR THR A . n A 1 128 VAL 128 209 209 VAL VAL A . n A 1 129 ARG 129 210 210 ARG ARG A . n A 1 130 ALA 130 211 211 ALA ALA A . n A 1 131 HIS 131 212 212 HIS HIS A . n A 1 132 GLN 132 213 213 GLN GLN A . n A 1 133 ALA 133 214 214 ALA ALA A . n A 1 134 ASN 134 215 215 ASN ASN A . n A 1 135 SER 135 216 216 SER SER A . n A 1 136 HIS 136 217 217 HIS HIS A . n A 1 137 LYS 137 218 218 LYS LYS A . n A 1 138 GLU 138 219 219 GLU GLU A . n A 1 139 ARG 139 220 220 ARG ARG A . n A 1 140 GLY 140 221 221 GLY GLY A . n A 1 141 TRP 141 222 222 TRP TRP A . n A 1 142 GLU 142 223 223 GLU GLU A . n A 1 143 GLN 143 224 224 GLN GLN A . n A 1 144 PHE 144 225 225 PHE PHE A . n A 1 145 THR 145 226 226 THR THR A . n A 1 146 ASP 146 227 227 ASP ASP A . n A 1 147 ALA 147 228 228 ALA ALA A . n A 1 148 VAL 148 229 229 VAL VAL A . n A 1 149 VAL 149 230 230 VAL VAL A . n A 1 150 SER 150 231 231 SER SER A . n A 1 151 TRP 151 232 232 TRP TRP A . n A 1 152 LEU 152 233 233 LEU LEU A . n A 1 153 ASN 153 234 234 ASN ASN A . n A 1 154 GLN 154 235 235 GLN GLN A . n A 1 155 ASN 155 236 236 ASN ASN A . n A 1 156 SER 156 237 237 SER SER A . n A 1 157 ASN 157 238 238 ASN ASN A . n A 1 158 GLY 158 239 239 GLY GLY A . n A 1 159 LEU 159 240 240 LEU LEU A . n A 1 160 VAL 160 241 241 VAL VAL A . n A 1 161 PHE 161 242 242 PHE PHE A . n A 1 162 LEU 162 243 243 LEU LEU A . n A 1 163 LEU 163 244 244 LEU LEU A . n A 1 164 TRP 164 245 245 TRP TRP A . n A 1 165 GLY 165 246 246 GLY GLY A . n A 1 166 SER 166 247 247 SER SER A . n A 1 167 TYR 167 248 248 TYR TYR A . n A 1 168 ALA 168 249 249 ALA ALA A . n A 1 169 GLN 169 250 250 GLN GLN A . n A 1 170 LYS 170 251 251 LYS LYS A . n A 1 171 LYS 171 252 252 LYS LYS A . n A 1 172 GLY 172 253 253 GLY GLY A . n A 1 173 SER 173 254 254 SER SER A . n A 1 174 ALA 174 255 255 ALA ALA A . n A 1 175 ILE 175 256 256 ILE ILE A . n A 1 176 ASP 176 257 257 ASP ASP A . n A 1 177 ARG 177 258 258 ARG ARG A . n A 1 178 LYS 178 259 259 LYS LYS A . n A 1 179 ARG 179 260 260 ARG ARG A . n A 1 180 HIS 180 261 261 HIS HIS A . n A 1 181 HIS 181 262 262 HIS HIS A . n A 1 182 VAL 182 263 263 VAL VAL A . n A 1 183 LEU 183 264 264 LEU LEU A . n A 1 184 GLN 184 265 265 GLN GLN A . n A 1 185 THR 185 266 266 THR THR A . n A 1 186 ALA 186 267 267 ALA ALA A . n A 1 187 HIS 187 268 268 HIS HIS A . n A 1 188 PRO 188 269 269 PRO PRO A . n A 1 189 SER 189 270 270 SER SER A . n A 1 190 PRO 190 271 271 PRO PRO A . n A 1 191 LEU 191 272 272 LEU LEU A . n A 1 192 SER 192 273 273 SER SER A . n A 1 193 VAL 193 274 274 VAL VAL A . n A 1 194 TYR 194 275 275 TYR TYR A . n A 1 195 ARG 195 276 276 ARG ARG A . n A 1 196 GLY 196 277 277 GLY GLY A . n A 1 197 PHE 197 278 278 PHE PHE A . n A 1 198 PHE 198 279 279 PHE PHE A . n A 1 199 GLY 199 280 280 GLY GLY A . n A 1 200 CYS 200 281 281 CYS CYS A . n A 1 201 ARG 201 282 282 ARG ARG A . n A 1 202 HIS 202 283 283 HIS HIS A . n A 1 203 PHE 203 284 284 PHE PHE A . n A 1 204 SER 204 285 285 SER SER A . n A 1 205 LYS 205 286 286 LYS LYS A . n A 1 206 THR 206 287 287 THR THR A . n A 1 207 ASN 207 288 288 ASN ASN A . n A 1 208 GLU 208 289 289 GLU GLU A . n A 1 209 LEU 209 290 290 LEU LEU A . n A 1 210 LEU 210 291 291 LEU LEU A . n A 1 211 GLN 211 292 292 GLN GLN A . n A 1 212 LYS 212 293 293 LYS LYS A . n A 1 213 SER 213 294 294 SER SER A . n A 1 214 GLY 214 295 295 GLY GLY A . n A 1 215 LYS 215 296 296 LYS LYS A . n A 1 216 LYS 216 297 297 LYS LYS A . n A 1 217 PRO 217 298 298 PRO PRO A . n A 1 218 ILE 218 299 299 ILE ILE A . n A 1 219 ASP 219 300 300 ASP ASP A . n A 1 220 TRP 220 301 301 TRP TRP A . n A 1 221 LYS 221 302 302 LYS LYS A . n A 1 222 GLU 222 303 303 GLU GLU A . n A 1 223 LEU 223 304 304 LEU LEU A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FCF 1 1 1 FCF FCF A . C 3 SCN 1 305 1 SCN SCN A . D 3 SCN 1 2 2 SCN SCN A . E 4 HOH 1 3 3 HOH HOH A . E 4 HOH 2 4 4 HOH HOH A . E 4 HOH 3 5 5 HOH HOH A . E 4 HOH 4 6 6 HOH HOH A . E 4 HOH 5 7 7 HOH HOH A . E 4 HOH 6 8 8 HOH HOH A . E 4 HOH 7 9 9 HOH HOH A . E 4 HOH 8 10 10 HOH HOH A . E 4 HOH 9 11 11 HOH HOH A . E 4 HOH 10 12 12 HOH HOH A . E 4 HOH 11 13 13 HOH HOH A . E 4 HOH 12 14 14 HOH HOH A . E 4 HOH 13 15 15 HOH HOH A . E 4 HOH 14 16 16 HOH HOH A . E 4 HOH 15 17 17 HOH HOH A . E 4 HOH 16 18 18 HOH HOH A . E 4 HOH 17 19 19 HOH HOH A . E 4 HOH 18 20 20 HOH HOH A . E 4 HOH 19 21 21 HOH HOH A . E 4 HOH 20 22 22 HOH HOH A . E 4 HOH 21 23 23 HOH HOH A . E 4 HOH 22 24 24 HOH HOH A . E 4 HOH 23 25 25 HOH HOH A . E 4 HOH 24 26 26 HOH HOH A . E 4 HOH 25 27 27 HOH HOH A . E 4 HOH 26 28 28 HOH HOH A . E 4 HOH 27 29 29 HOH HOH A . E 4 HOH 28 30 30 HOH HOH A . E 4 HOH 29 31 31 HOH HOH A . E 4 HOH 30 32 32 HOH HOH A . E 4 HOH 31 33 33 HOH HOH A . E 4 HOH 32 34 34 HOH HOH A . E 4 HOH 33 35 35 HOH HOH A . E 4 HOH 34 36 36 HOH HOH A . E 4 HOH 35 37 37 HOH HOH A . E 4 HOH 36 38 38 HOH HOH A . E 4 HOH 37 39 39 HOH HOH A . E 4 HOH 38 40 40 HOH HOH A . E 4 HOH 39 41 41 HOH HOH A . E 4 HOH 40 42 42 HOH HOH A . E 4 HOH 41 43 43 HOH HOH A . E 4 HOH 42 44 44 HOH HOH A . E 4 HOH 43 45 45 HOH HOH A . E 4 HOH 44 46 46 HOH HOH A . E 4 HOH 45 47 47 HOH HOH A . E 4 HOH 46 48 48 HOH HOH A . E 4 HOH 47 49 49 HOH HOH A . E 4 HOH 48 50 50 HOH HOH A . E 4 HOH 49 51 51 HOH HOH A . E 4 HOH 50 52 52 HOH HOH A . E 4 HOH 51 53 53 HOH HOH A . E 4 HOH 52 54 54 HOH HOH A . E 4 HOH 53 55 55 HOH HOH A . E 4 HOH 54 56 56 HOH HOH A . E 4 HOH 55 57 57 HOH HOH A . E 4 HOH 56 58 58 HOH HOH A . E 4 HOH 57 59 59 HOH HOH A . E 4 HOH 58 60 60 HOH HOH A . E 4 HOH 59 61 61 HOH HOH A . E 4 HOH 60 62 62 HOH HOH A . E 4 HOH 61 63 63 HOH HOH A . E 4 HOH 62 64 64 HOH HOH A . E 4 HOH 63 65 65 HOH HOH A . E 4 HOH 64 66 66 HOH HOH A . E 4 HOH 65 67 67 HOH HOH A . E 4 HOH 66 68 68 HOH HOH A . E 4 HOH 67 69 69 HOH HOH A . E 4 HOH 68 70 70 HOH HOH A . E 4 HOH 69 71 71 HOH HOH A . E 4 HOH 70 72 72 HOH HOH A . E 4 HOH 71 73 73 HOH HOH A . E 4 HOH 72 74 74 HOH HOH A . E 4 HOH 73 75 75 HOH HOH A . E 4 HOH 74 76 76 HOH HOH A . E 4 HOH 75 77 77 HOH HOH A . E 4 HOH 76 78 78 HOH HOH A . E 4 HOH 77 79 79 HOH HOH A . E 4 HOH 78 80 80 HOH HOH A . E 4 HOH 79 81 81 HOH HOH A . E 4 HOH 80 306 1 HOH HOH A . E 4 HOH 81 307 2 HOH HOH A . E 4 HOH 82 308 1 HOH HOH A . E 4 HOH 83 309 2 HOH HOH A . E 4 HOH 84 310 3 HOH HOH A . E 4 HOH 85 311 4 HOH HOH A . E 4 HOH 86 312 5 HOH HOH A . E 4 HOH 87 313 6 HOH HOH A . E 4 HOH 88 314 7 HOH HOH A . E 4 HOH 89 315 8 HOH HOH A . E 4 HOH 90 316 9 HOH HOH A . E 4 HOH 91 317 10 HOH HOH A . E 4 HOH 92 318 11 HOH HOH A . E 4 HOH 93 319 12 HOH HOH A . E 4 HOH 94 320 13 HOH HOH A . E 4 HOH 95 321 14 HOH HOH A . E 4 HOH 96 322 15 HOH HOH A . E 4 HOH 97 323 16 HOH HOH A . E 4 HOH 98 324 17 HOH HOH A . E 4 HOH 99 325 18 HOH HOH A . E 4 HOH 100 326 19 HOH HOH A . E 4 HOH 101 327 20 HOH HOH A . E 4 HOH 102 328 21 HOH HOH A . E 4 HOH 103 329 22 HOH HOH A . E 4 HOH 104 330 24 HOH HOH A . E 4 HOH 105 331 25 HOH HOH A . E 4 HOH 106 332 26 HOH HOH A . E 4 HOH 107 333 27 HOH HOH A . E 4 HOH 108 334 28 HOH HOH A . E 4 HOH 109 335 29 HOH HOH A . E 4 HOH 110 336 30 HOH HOH A . E 4 HOH 111 337 31 HOH HOH A . E 4 HOH 112 338 32 HOH HOH A . E 4 HOH 113 339 33 HOH HOH A . E 4 HOH 114 340 34 HOH HOH A . E 4 HOH 115 341 35 HOH HOH A . E 4 HOH 116 342 36 HOH HOH A . E 4 HOH 117 343 37 HOH HOH A . E 4 HOH 118 344 38 HOH HOH A . E 4 HOH 119 345 39 HOH HOH A . E 4 HOH 120 346 40 HOH HOH A . E 4 HOH 121 347 1 HOH HOH A . E 4 HOH 122 348 2 HOH HOH A . E 4 HOH 123 349 3 HOH HOH A . E 4 HOH 124 350 4 HOH HOH A . E 4 HOH 125 351 5 HOH HOH A . E 4 HOH 126 352 6 HOH HOH A . E 4 HOH 127 353 7 HOH HOH A . E 4 HOH 128 354 8 HOH HOH A . E 4 HOH 129 355 9 HOH HOH A . E 4 HOH 130 356 10 HOH HOH A . E 4 HOH 131 357 11 HOH HOH A . E 4 HOH 132 358 12 HOH HOH A . E 4 HOH 133 359 13 HOH HOH A . E 4 HOH 134 360 14 HOH HOH A . E 4 HOH 135 361 15 HOH HOH A . E 4 HOH 136 362 16 HOH HOH A . E 4 HOH 137 363 17 HOH HOH A . E 4 HOH 138 364 18 HOH HOH A . E 4 HOH 139 365 19 HOH HOH A . E 4 HOH 140 366 20 HOH HOH A . E 4 HOH 141 367 21 HOH HOH A . E 4 HOH 142 368 22 HOH HOH A . E 4 HOH 143 369 23 HOH HOH A . E 4 HOH 144 370 24 HOH HOH A . E 4 HOH 145 371 25 HOH HOH A . E 4 HOH 146 372 26 HOH HOH A . E 4 HOH 147 373 27 HOH HOH A . E 4 HOH 148 374 28 HOH HOH A . E 4 HOH 149 375 29 HOH HOH A . E 4 HOH 150 376 30 HOH HOH A . E 4 HOH 151 377 31 HOH HOH A . E 4 HOH 152 378 32 HOH HOH A . E 4 HOH 153 379 33 HOH HOH A . E 4 HOH 154 380 34 HOH HOH A . E 4 HOH 155 381 35 HOH HOH A . E 4 HOH 156 382 36 HOH HOH A . E 4 HOH 157 383 37 HOH HOH A . E 4 HOH 158 384 38 HOH HOH A . E 4 HOH 159 385 39 HOH HOH A . E 4 HOH 160 386 40 HOH HOH A . E 4 HOH 161 387 82 HOH HOH A . E 4 HOH 162 388 83 HOH HOH A . E 4 HOH 163 389 84 HOH HOH A . E 4 HOH 164 390 85 HOH HOH A . E 4 HOH 165 391 86 HOH HOH A . E 4 HOH 166 392 87 HOH HOH A . E 4 HOH 167 393 88 HOH HOH A . E 4 HOH 168 394 89 HOH HOH A . E 4 HOH 169 395 90 HOH HOH A . E 4 HOH 170 396 91 HOH HOH A . E 4 HOH 171 397 92 HOH HOH A . E 4 HOH 172 398 93 HOH HOH A . E 4 HOH 173 399 94 HOH HOH A . E 4 HOH 174 400 95 HOH HOH A . E 4 HOH 175 401 96 HOH HOH A . E 4 HOH 176 402 97 HOH HOH A . E 4 HOH 177 403 98 HOH HOH A . E 4 HOH 178 404 99 HOH HOH A . E 4 HOH 179 405 100 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-04-28 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 3 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # _phasing.method MR # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal DENZO . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 1 SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 2 MOLREP . ? program 'Alexei Vaguine' alexei@ysbl.york.ac.uk phasing http://www.ccp4.ac.uk/dist/html/molrep.html Fortran_77 ? 3 REFMAC . ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 4 PDB_EXTRACT 3.006 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLN A 144 ? ? -111.81 -82.02 2 1 PHE A 158 ? ? 73.51 -15.85 3 1 GLU A 182 ? ? -29.00 -51.44 4 1 LEU A 202 ? ? -109.21 74.83 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '3-[(1E,7E)-8-(2,6-dioxo-1,2,3,6-tetrahydropyrimidin-4-yl)-3,6-dioxa-2,7-diazaocta-1,7-dien-1-yl]benzoic acid' FCF 3 'THIOCYANATE ION' SCN 4 water HOH #