HEADER TRANSFERASE 22-NOV-08 3FCR TITLE CRYSTAL STRUCTURE OF PUTATIVE AMINOTRANSFERASE (YP_614685.1) FROM TITLE 2 SILICIBACTER SP. TM1040 AT 1.80 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE AMINOTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.6.1.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SILICIBACTER SP. TM1040; SOURCE 3 ORGANISM_TAXID: 292414; SOURCE 4 GENE: TM1040_2691, YP_614685.1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS YP_614685.1, PUTATIVE AMINOTRANSFERASE, STRUCTURAL GENOMICS, JOINT KEYWDS 2 CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, KEYWDS 3 PSI-2, AMINOTRANSFERASE, PYRIDOXAL PHOSPHATE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 6 01-FEB-23 3FCR 1 REMARK SEQADV REVDAT 5 24-JUL-19 3FCR 1 REMARK LINK REVDAT 4 01-NOV-17 3FCR 1 REMARK REVDAT 3 13-JUL-11 3FCR 1 VERSN REVDAT 2 27-JAN-09 3FCR 1 DBREF REVDAT 1 13-JAN-09 3FCR 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE AMINOTRANSFERASE (YP_614685.1) JRNL TITL 2 FROM SILICIBACTER SP. TM1040 AT 1.80 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.44 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 3 NUMBER OF REFLECTIONS : 37767 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1896 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2560 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.34 REMARK 3 BIN R VALUE (WORKING SET) : 0.3390 REMARK 3 BIN FREE R VALUE SET COUNT : 141 REMARK 3 BIN FREE R VALUE : 0.3950 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3509 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 313 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.63 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.46000 REMARK 3 B22 (A**2) : -2.06000 REMARK 3 B33 (A**2) : 3.86000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.65000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.167 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.155 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.177 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.519 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3675 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2449 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4997 ; 1.737 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5971 ; 1.060 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 477 ; 4.024 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 164 ;33.163 ;24.085 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 590 ;12.074 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;15.294 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 549 ; 0.106 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4157 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 744 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 787 ; 0.202 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2608 ; 0.191 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1745 ; 0.178 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1770 ; 0.088 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 287 ; 0.193 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 33 ; 0.216 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 114 ; 0.186 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 32 ; 0.214 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2579 ; 1.278 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 957 ; 0.295 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3664 ; 1.757 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1527 ; 1.168 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1321 ; 1.741 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1.HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2.A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 3.1,2-ETHANEDIOL (EDO) MOLECULES FROM THE REMARK 3 CRYOPROTECTION CONDITION HAVE BEEN MODELED IN THE SOLVENT REMARK 3 STRUCTURE. 4.PYRIDOXAL PHOSPHATE IN DUAL CONFORMATION AS FREE REMARK 3 PLP AND COVALENTLY ATTACHED TO LYS288 (LLP) HAS BEEN MODELED AT REMARK 3 THE PUTATIVE ACTIVE SITE BASED ON DIFFERENCE DENSITY AND OMIT REMARK 3 MAPS AND STRUCTURAL SIMILARITY TO PLP-DEPENDENT REMARK 3 AMINOTRANSFERASES. 5.RESIDUE ALA287 IS PRESENT IN THE VICINITY REMARK 3 OF THE PUTATIVE ACTIVE SITE AND IS A RAMACHANDRAN OUTLIER. THIS REMARK 3 COULD HAVE SOME FUNCTIONAL SIGNIFICANCE. REMARK 4 REMARK 4 3FCR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-NOV-08. REMARK 100 THE DEPOSITION ID IS D_1000050429. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-OCT-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.94645,0.97962 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL REMARK 200 MONOCHROMETER REMARK 200 OPTICS : ADJUSTABLE FOCUSING MIRRORS IN K REMARK 200 -B GEOMETRY REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37793 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 29.440 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.3600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.64800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: DATA WERE SCALED USING XSCALE WITH FRIEDEL PAIRS KEPT AS REMARK 200 SEPARATE WHEN COMPUTING R-SYM, COMPLETENESS AND . REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30.0000% PEG-6000, 0.1M BICINE PH 9.0, REMARK 280 NANODROP, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 38.42500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.12500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 38.42500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 48.12500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT CRYSTAL PACKING ANALYSIS SUGGESTS THAT A REMARK 300 DIMER IS THE STABLE OLIGOMERIC FORM IN SOLUTION. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -52.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 726 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 36 CE NZ REMARK 470 LYS A 50 CE NZ REMARK 470 LYS A 170 CD CE NZ REMARK 470 GLU A 243 CD OE1 OE2 REMARK 470 GLU A 280 CB CG CD OE1 OE2 REMARK 470 GLU A 365 CD OE1 OE2 REMARK 470 GLN A 369 CD OE1 NE2 REMARK 470 LYS A 389 CE NZ REMARK 470 LYS A 402 CE NZ REMARK 470 GLU A 413 CD OE1 OE2 REMARK 470 LYS A 416 NZ REMARK 470 LYS A 453 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 476 O HOH A 646 2555 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 81 95.25 -166.32 REMARK 500 LYS A 171 -2.02 75.70 REMARK 500 PHE A 265 42.34 79.60 REMARK 500 GLU A 280 73.51 -114.92 REMARK 500 ALA A 287 -154.06 -179.34 REMARK 500 ALA A 287 -154.06 -179.34 REMARK 500 LLP A 288 -90.47 44.40 REMARK 500 LYS A 288 -90.22 44.06 REMARK 500 LEU A 297 144.61 -177.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PLP A 458 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 459 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 460 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 461 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 462 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 463 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 391382 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3FCR A 1 457 UNP Q1GD43 Q1GD43_SILST 1 457 SEQADV 3FCR GLY A 0 UNP Q1GD43 EXPRESSION TAG SEQADV 3FCR LLP A 288 UNP Q1GD43 LYS 288 MICROHETEROGENEITY SEQRES 1 A 458 GLY MSE LEU LYS ASN ASP GLN LEU ASP GLN TRP ASP ARG SEQRES 2 A 458 ASP ASN PHE PHE HIS PRO SER THR HIS LEU ALA GLN HIS SEQRES 3 A 458 ALA ARG GLY GLU SER ALA ASN ARG VAL ILE LYS THR ALA SEQRES 4 A 458 SER GLY VAL PHE ILE GLU ASP ARG ASP GLY THR LYS LEU SEQRES 5 A 458 LEU ASP ALA PHE ALA GLY LEU TYR CYS VAL ASN VAL GLY SEQRES 6 A 458 TYR GLY ARG GLN GLU ILE ALA GLU ALA ILE ALA ASP GLN SEQRES 7 A 458 ALA ARG GLU LEU ALA TYR TYR HIS SER TYR VAL GLY HIS SEQRES 8 A 458 GLY THR GLU ALA SER ILE THR LEU ALA LYS MSE ILE LEU SEQRES 9 A 458 ASP ARG ALA PRO LYS ASN MSE SER LYS VAL TYR PHE GLY SEQRES 10 A 458 LEU GLY GLY SER ASP ALA ASN GLU THR ASN VAL LYS LEU SEQRES 11 A 458 ILE TRP TYR TYR ASN ASN ILE LEU GLY ARG PRO GLU LYS SEQRES 12 A 458 LYS LYS ILE ILE SER ARG TRP ARG GLY TYR HIS GLY SER SEQRES 13 A 458 GLY LEU VAL THR GLY SER LEU THR GLY LEU GLU LEU PHE SEQRES 14 A 458 HIS LYS LYS PHE ASP LEU PRO VAL GLU GLN VAL ILE HIS SEQRES 15 A 458 THR GLU ALA PRO TYR TYR PHE ARG ARG GLU ASP LEU ASN SEQRES 16 A 458 GLN THR GLU GLU GLN PHE VAL ALA HIS CYS VAL ALA GLU SEQRES 17 A 458 LEU GLU ALA LEU ILE GLU ARG GLU GLY ALA ASP THR ILE SEQRES 18 A 458 ALA ALA PHE ILE GLY GLU PRO ILE LEU GLY THR GLY GLY SEQRES 19 A 458 ILE VAL PRO PRO PRO ALA GLY TYR TRP GLU ALA ILE GLN SEQRES 20 A 458 THR VAL LEU ASN LYS HIS ASP ILE LEU LEU VAL ALA ASP SEQRES 21 A 458 GLU VAL VAL THR GLY PHE GLY ARG LEU GLY THR MSE PHE SEQRES 22 A 458 GLY SER ASP HIS TYR GLY LEU GLU PRO ASP ILE ILE THR SEQRES 23 A 458 ILE ALA LLP GLY LEU THR SER ALA TYR ALA PRO LEU SER SEQRES 24 A 458 GLY SER ILE VAL SER ASP LYS VAL TRP LYS VAL LEU GLU SEQRES 25 A 458 GLN GLY THR ASP GLU ASN GLY PRO ILE GLY HIS GLY TRP SEQRES 26 A 458 THR TYR SER ALA HIS PRO ILE GLY ALA ALA ALA GLY VAL SEQRES 27 A 458 ALA ASN LEU LYS LEU LEU ASP GLU LEU ASN LEU VAL SER SEQRES 28 A 458 ASN ALA GLY GLU VAL GLY ALA TYR LEU ASN ALA THR MSE SEQRES 29 A 458 ALA GLU ALA LEU SER GLN HIS ALA ASN VAL GLY ASP VAL SEQRES 30 A 458 ARG GLY GLU GLY LEU LEU CYS ALA VAL GLU PHE VAL LYS SEQRES 31 A 458 ASP ARG ASP SER ARG THR PHE PHE ASP ALA ALA ASP LYS SEQRES 32 A 458 ILE GLY PRO GLN ILE SER ALA LYS LEU LEU GLU GLN ASP SEQRES 33 A 458 LYS ILE ILE ALA ARG ALA MSE PRO GLN GLY ASP ILE LEU SEQRES 34 A 458 GLY PHE ALA PRO PRO PHE CYS LEU THR ARG ALA GLU ALA SEQRES 35 A 458 ASP GLN VAL VAL GLU GLY THR LEU ARG ALA VAL LYS ALA SEQRES 36 A 458 VAL LEU GLY MODRES 3FCR MSE A 1 MET SELENOMETHIONINE MODRES 3FCR MSE A 101 MET SELENOMETHIONINE MODRES 3FCR MSE A 110 MET SELENOMETHIONINE MODRES 3FCR MSE A 271 MET SELENOMETHIONINE MODRES 3FCR LLP A 288 LYS MODRES 3FCR MSE A 363 MET SELENOMETHIONINE MODRES 3FCR MSE A 422 MET SELENOMETHIONINE HET MSE A 1 18 HET MSE A 101 8 HET MSE A 110 8 HET MSE A 271 8 HET LLP A 288 24 HET MSE A 363 8 HET MSE A 422 8 HET PLP A 458 16 HET EDO A 459 4 HET EDO A 460 4 HET EDO A 461 4 HET EDO A 462 4 HET EDO A 463 4 HETNAM MSE SELENOMETHIONINE HETNAM LLP (2S)-2-AMINO-6-[[3-HYDROXY-2-METHYL-5- HETNAM 2 LLP (PHOSPHONOOXYMETHYL)PYRIDIN-4- HETNAM 3 LLP YL]METHYLIDENEAMINO]HEXANOIC ACID HETNAM PLP PYRIDOXAL-5'-PHOSPHATE HETNAM EDO 1,2-ETHANEDIOL HETSYN LLP N'-PYRIDOXYL-LYSINE-5'-MONOPHOSPHATE HETSYN PLP VITAMIN B6 PHOSPHATE HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 1 LLP C14 H22 N3 O7 P FORMUL 2 PLP C8 H10 N O6 P FORMUL 3 EDO 5(C2 H6 O2) FORMUL 8 HOH *313(H2 O) HELIX 1 1 GLY A 0 PHE A 15 1 16 HELIX 2 2 HIS A 21 ARG A 27 1 7 HELIX 3 3 PHE A 55 CYS A 60 1 6 HELIX 4 4 ARG A 67 ALA A 82 1 16 HELIX 5 5 THR A 92 ALA A 106 1 15 HELIX 6 6 GLY A 118 LEU A 137 1 20 HELIX 7 7 GLY A 156 THR A 163 1 8 HELIX 8 8 LEU A 165 HIS A 169 5 5 HELIX 9 9 TYR A 186 ARG A 190 5 5 HELIX 10 10 THR A 196 GLY A 216 1 21 HELIX 11 11 GLY A 240 ASP A 253 1 14 HELIX 12 12 PHE A 272 GLY A 278 1 7 HELIX 13 13 ALA A 287 THR A 291 5 5 HELIX 14 14 ASP A 304 GLY A 318 1 15 HELIX 15 15 HIS A 329 LEU A 346 1 18 HELIX 16 16 ASN A 347 SER A 368 1 22 HELIX 17 17 ASP A 398 ASP A 401 5 4 HELIX 18 18 LYS A 402 LYS A 416 1 15 HELIX 19 19 THR A 437 GLY A 457 1 21 SHEET 1 A 4 ILE A 35 SER A 39 0 SHEET 2 A 4 PHE A 42 ASP A 45 -1 O PHE A 42 N SER A 39 SHEET 3 A 4 LYS A 50 ASP A 53 -1 O LEU A 51 N ILE A 43 SHEET 4 A 4 ILE A 417 ILE A 418 1 O ILE A 418 N LEU A 52 SHEET 1 B 7 MSE A 110 GLY A 116 0 SHEET 2 B 7 SER A 298 SER A 303 -1 O VAL A 302 N SER A 111 SHEET 3 B 7 ILE A 283 ILE A 286 -1 N ILE A 284 O ILE A 301 SHEET 4 B 7 LEU A 255 ASP A 259 1 N ALA A 258 O ILE A 283 SHEET 5 B 7 ILE A 220 GLY A 225 1 N PHE A 223 O VAL A 257 SHEET 6 B 7 LYS A 144 ARG A 148 1 N ILE A 146 O ILE A 224 SHEET 7 B 7 VAL A 179 THR A 182 1 O ILE A 180 N SER A 147 SHEET 1 C 4 VAL A 373 GLY A 378 0 SHEET 2 C 4 CYS A 383 PHE A 387 -1 O ALA A 384 N ARG A 377 SHEET 3 C 4 ILE A 427 PHE A 430 -1 O PHE A 430 N CYS A 383 SHEET 4 C 4 ARG A 420 ALA A 421 -1 N ARG A 420 O GLY A 429 LINK C GLY A 0 N MSE A 1 1555 1555 1.34 LINK C MSE A 1 N LEU A 2 1555 1555 1.32 LINK C LYS A 100 N MSE A 101 1555 1555 1.32 LINK C MSE A 101 N ILE A 102 1555 1555 1.33 LINK C ASN A 109 N MSE A 110 1555 1555 1.33 LINK C MSE A 110 N SER A 111 1555 1555 1.33 LINK C THR A 270 N MSE A 271 1555 1555 1.33 LINK C MSE A 271 N PHE A 272 1555 1555 1.33 LINK C ALA A 287 N ALLP A 288 1555 1555 1.35 LINK C ALLP A 288 N GLY A 289 1555 1555 1.34 LINK C THR A 362 N MSE A 363 1555 1555 1.34 LINK C MSE A 363 N ALA A 364 1555 1555 1.33 LINK C ALA A 421 N MSE A 422 1555 1555 1.33 LINK C MSE A 422 N PRO A 423 1555 1555 1.35 CISPEP 1 LEU A 174 PRO A 175 0 -0.78 SITE 1 AC1 18 GLY A 118 GLY A 119 SER A 120 TYR A 152 SITE 2 AC1 18 HIS A 153 GLY A 154 GLU A 226 ASP A 259 SITE 3 AC1 18 VAL A 261 VAL A 262 LLP A 288 TRP A 324 SITE 4 AC1 18 THR A 325 HOH A 464 HOH A 469 HOH A 504 SITE 5 AC1 18 HOH A 568 HOH A 646 SITE 1 AC2 4 ASN A 4 LEU A 7 ARG A 46 GLU A 93 SITE 1 AC3 5 THR A 37 SER A 39 PHE A 42 GLU A 44 SITE 2 AC3 5 LYS A 50 SITE 1 AC4 4 TRP A 10 LYS A 100 MSE A 101 HOH A 567 SITE 1 AC5 3 ASP A 121 TRP A 324 HOH A 577 SITE 1 AC6 6 ASN A 135 HIS A 169 LYS A 171 PHE A 172 SITE 2 AC6 6 ASP A 173 HOH A 611 CRYST1 76.850 96.250 60.300 90.00 105.51 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013012 0.000000 0.003611 0.00000 SCALE2 0.000000 0.010390 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017210 0.00000