HEADER VIRAL PROTEIN 24-NOV-08 3FD4 TITLE CRYSTAL STRUCTURE OF EPSTEIN-BARR VIRUS GP42 PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCOPROTEIN GP42; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN HERPESVIRUS 4 (STRAIN B95-8); SOURCE 3 ORGANISM_TAXID: 10377; SOURCE 4 STRAIN: B95-8; SOURCE 5 GENE: BZLF2; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PBACGUS-3 KEYWDS C TYPE LECTIN, HERPESVIRUS, VIRUS ENTRY, MEMBRANE FUSION, HOST-VIRUS KEYWDS 2 INTERACTION, LECTIN, MEMBRANE, TRANSMEMBRANE, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.KIRSCHNER,T.JARDETZKY REVDAT 3 06-SEP-23 3FD4 1 REMARK REVDAT 2 01-NOV-17 3FD4 1 REMARK REVDAT 1 23-JUN-09 3FD4 0 JRNL AUTH A.N.KIRSCHNER,J.SOREM,R.LONGNECKER,T.S.JARDETZKY JRNL TITL STRUCTURE OF EPSTEIN-BARR VIRUS GLYCOPROTEIN 42 SUGGESTS A JRNL TITL 2 MECHANISM FOR TRIGGERING RECEPTOR-ACTIVATED VIRUS ENTRY. JRNL REF STRUCTURE V. 17 223 2009 JRNL REFN ISSN 0969-2126 JRNL PMID 19217393 JRNL DOI 10.1016/J.STR.2008.12.010 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.73 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 13445 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.500 REMARK 3 FREE R VALUE TEST SET COUNT : 629 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 951 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.20 REMARK 3 BIN R VALUE (WORKING SET) : 0.2600 REMARK 3 BIN FREE R VALUE SET COUNT : 45 REMARK 3 BIN FREE R VALUE : 0.3210 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2318 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 281 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.99000 REMARK 3 B22 (A**2) : -2.34000 REMARK 3 B33 (A**2) : 6.33000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.486 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.260 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.165 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.268 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2410 ; 0.026 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3293 ; 1.708 ; 1.915 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 285 ; 7.130 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 108 ;39.370 ;22.963 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 354 ;19.621 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;38.216 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 346 ; 0.116 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1856 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 546 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 430 ; 0.163 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1572 ; 0.180 ; 0.300 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1099 ; 0.183 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): 1231 ; 0.159 ; 0.500 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 228 ; 0.215 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 19 ; 0.225 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): 73 ; 0.202 ; 0.300 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 13 ; 0.168 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1432 ; 2.778 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 582 ; 0.794 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2338 ; 4.342 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 978 ; 3.308 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 955 ; 4.939 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 2 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 88 A 167 1 REMARK 3 1 B 88 B 167 1 REMARK 3 2 A 174 A 221 1 REMARK 3 2 B 174 B 221 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 1766 ; 0.050 ; 0.050 REMARK 3 TIGHT THERMAL 1 A (A**2): 1766 ; 0.470 ; 0.500 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3FD4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-JAN-09. REMARK 100 THE DEPOSITION ID IS D_1000050440. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-MAR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.72505 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14139 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 46.730 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 4.400 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1KG0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG-3000, 100 MM CHES PH 9.5, 10 REMARK 280 MM YCL3, 25 MM TRIS PH 7.5, 150 MM NACL, TEMPERATURE 298K, VAPOR REMARK 280 DIFFUSION REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.39600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.73150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.73450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 39.73150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.39600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.73450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 33 REMARK 465 GLY A 34 REMARK 465 GLY A 35 REMARK 465 ARG A 36 REMARK 465 VAL A 37 REMARK 465 ALA A 38 REMARK 465 ALA A 39 REMARK 465 ALA A 40 REMARK 465 ALA A 41 REMARK 465 ILE A 42 REMARK 465 THR A 43 REMARK 465 TRP A 44 REMARK 465 VAL A 45 REMARK 465 PRO A 46 REMARK 465 LYS A 47 REMARK 465 PRO A 48 REMARK 465 ASN A 49 REMARK 465 VAL A 50 REMARK 465 GLU A 51 REMARK 465 VAL A 52 REMARK 465 TRP A 53 REMARK 465 PRO A 54 REMARK 465 VAL A 55 REMARK 465 ASP A 56 REMARK 465 PRO A 57 REMARK 465 PRO A 58 REMARK 465 PRO A 59 REMARK 465 PRO A 60 REMARK 465 VAL A 61 REMARK 465 ASN A 62 REMARK 465 PHE A 63 REMARK 465 ASN A 64 REMARK 465 LYS A 65 REMARK 465 THR A 66 REMARK 465 ALA A 67 REMARK 465 GLU A 68 REMARK 465 GLN A 69 REMARK 465 GLU A 70 REMARK 465 TYR A 71 REMARK 465 GLY A 72 REMARK 465 ASP A 73 REMARK 465 LYS A 74 REMARK 465 GLU A 75 REMARK 465 VAL A 76 REMARK 465 LYS A 77 REMARK 465 LEU A 78 REMARK 465 PRO A 79 REMARK 465 HIS A 80 REMARK 465 TRP A 81 REMARK 465 THR A 82 REMARK 465 SER A 223 REMARK 465 GLY B 33 REMARK 465 GLY B 34 REMARK 465 GLY B 35 REMARK 465 ARG B 36 REMARK 465 VAL B 37 REMARK 465 ALA B 38 REMARK 465 ALA B 39 REMARK 465 ALA B 40 REMARK 465 ALA B 41 REMARK 465 ILE B 42 REMARK 465 THR B 43 REMARK 465 TRP B 44 REMARK 465 VAL B 45 REMARK 465 PRO B 46 REMARK 465 LYS B 47 REMARK 465 PRO B 48 REMARK 465 ASN B 49 REMARK 465 VAL B 50 REMARK 465 GLU B 51 REMARK 465 VAL B 52 REMARK 465 TRP B 53 REMARK 465 PRO B 54 REMARK 465 VAL B 55 REMARK 465 ASP B 56 REMARK 465 PRO B 57 REMARK 465 PRO B 58 REMARK 465 PRO B 59 REMARK 465 PRO B 60 REMARK 465 VAL B 61 REMARK 465 ASN B 62 REMARK 465 PHE B 63 REMARK 465 ASN B 64 REMARK 465 LYS B 65 REMARK 465 THR B 66 REMARK 465 ALA B 67 REMARK 465 GLU B 68 REMARK 465 GLN B 69 REMARK 465 GLU B 70 REMARK 465 TYR B 71 REMARK 465 GLY B 72 REMARK 465 ASP B 73 REMARK 465 LYS B 74 REMARK 465 GLU B 75 REMARK 465 SER B 223 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 245 O HOH B 375 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL A 169 CB VAL A 169 CG1 0.134 REMARK 500 VAL A 169 CB VAL A 169 CG2 0.165 REMARK 500 LYS B 77 CB LYS B 77 CG 0.183 REMARK 500 CYS B 208 CB CYS B 208 SG 0.113 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 86 -176.54 -68.23 REMARK 500 THR A 87 -8.41 71.35 REMARK 500 REMARK 500 REMARK: NULL DBREF 3FD4 A 33 223 UNP P03205 GP42_EBV 33 223 DBREF 3FD4 B 33 223 UNP P03205 GP42_EBV 33 223 SEQRES 1 A 191 GLY GLY GLY ARG VAL ALA ALA ALA ALA ILE THR TRP VAL SEQRES 2 A 191 PRO LYS PRO ASN VAL GLU VAL TRP PRO VAL ASP PRO PRO SEQRES 3 A 191 PRO PRO VAL ASN PHE ASN LYS THR ALA GLU GLN GLU TYR SEQRES 4 A 191 GLY ASP LYS GLU VAL LYS LEU PRO HIS TRP THR PRO THR SEQRES 5 A 191 LEU HIS THR PHE GLN VAL PRO GLN ASN TYR THR LYS ALA SEQRES 6 A 191 ASN CYS THR TYR CYS ASN THR ARG GLU TYR THR PHE SER SEQRES 7 A 191 TYR LYS GLY CYS CYS PHE TYR PHE THR LYS LYS LYS HIS SEQRES 8 A 191 THR TRP ASN GLY CYS PHE GLN ALA CYS ALA GLU LEU TYR SEQRES 9 A 191 PRO CYS THR TYR PHE TYR GLY PRO THR PRO ASP ILE LEU SEQRES 10 A 191 PRO VAL VAL THR ARG ASN LEU ASN ALA ILE GLU SER LEU SEQRES 11 A 191 TRP VAL GLY VAL TYR ARG VAL GLY GLU GLY ASN TRP THR SEQRES 12 A 191 SER LEU ASP GLY GLY THR PHE LYS VAL TYR GLN ILE PHE SEQRES 13 A 191 GLY SER HIS CYS THR TYR VAL SER LYS PHE SER THR VAL SEQRES 14 A 191 PRO VAL SER HIS HIS GLU CYS SER PHE LEU LYS PRO CYS SEQRES 15 A 191 LEU CYS VAL SER GLN ARG SER ASN SER SEQRES 1 B 191 GLY GLY GLY ARG VAL ALA ALA ALA ALA ILE THR TRP VAL SEQRES 2 B 191 PRO LYS PRO ASN VAL GLU VAL TRP PRO VAL ASP PRO PRO SEQRES 3 B 191 PRO PRO VAL ASN PHE ASN LYS THR ALA GLU GLN GLU TYR SEQRES 4 B 191 GLY ASP LYS GLU VAL LYS LEU PRO HIS TRP THR PRO THR SEQRES 5 B 191 LEU HIS THR PHE GLN VAL PRO GLN ASN TYR THR LYS ALA SEQRES 6 B 191 ASN CYS THR TYR CYS ASN THR ARG GLU TYR THR PHE SER SEQRES 7 B 191 TYR LYS GLY CYS CYS PHE TYR PHE THR LYS LYS LYS HIS SEQRES 8 B 191 THR TRP ASN GLY CYS PHE GLN ALA CYS ALA GLU LEU TYR SEQRES 9 B 191 PRO CYS THR TYR PHE TYR GLY PRO THR PRO ASP ILE LEU SEQRES 10 B 191 PRO VAL VAL THR ARG ASN LEU ASN ALA ILE GLU SER LEU SEQRES 11 B 191 TRP VAL GLY VAL TYR ARG VAL GLY GLU GLY ASN TRP THR SEQRES 12 B 191 SER LEU ASP GLY GLY THR PHE LYS VAL TYR GLN ILE PHE SEQRES 13 B 191 GLY SER HIS CYS THR TYR VAL SER LYS PHE SER THR VAL SEQRES 14 B 191 PRO VAL SER HIS HIS GLU CYS SER PHE LEU LYS PRO CYS SEQRES 15 B 191 LEU CYS VAL SER GLN ARG SER ASN SER FORMUL 3 HOH *281(H2 O) HELIX 1 1 ASN A 126 TYR A 136 1 11 HELIX 2 2 ILE A 148 ARG A 154 1 7 HELIX 3 3 ASN B 126 TYR B 136 1 11 HELIX 4 4 ILE B 148 ARG B 154 1 7 SHEET 1 A 4 PHE A 109 TYR A 111 0 SHEET 2 A 4 CYS A 114 PHE A 118 -1 O PHE A 116 N PHE A 109 SHEET 3 A 4 LEU A 215 GLN A 219 -1 O SER A 218 N CYS A 115 SHEET 4 A 4 THR A 139 PHE A 141 -1 N TYR A 140 O VAL A 217 SHEET 1 B 3 SER A 161 VAL A 164 0 SHEET 2 B 3 THR A 193 SER A 196 -1 O THR A 193 N VAL A 164 SHEET 3 B 3 VAL A 203 SER A 204 -1 O VAL A 203 N TYR A 194 SHEET 1 C 3 TYR A 167 ARG A 168 0 SHEET 2 C 3 TRP A 174 SER A 176 -1 O THR A 175 N TYR A 167 SHEET 3 C 3 GLY A 179 PHE A 182 -1 O GLY A 179 N SER A 176 SHEET 1 D 4 PHE B 109 TYR B 111 0 SHEET 2 D 4 CYS B 114 PHE B 118 -1 O PHE B 116 N PHE B 109 SHEET 3 D 4 LEU B 215 GLN B 219 -1 O SER B 218 N CYS B 115 SHEET 4 D 4 THR B 139 PHE B 141 -1 N TYR B 140 O VAL B 217 SHEET 1 E 3 SER B 161 VAL B 164 0 SHEET 2 E 3 THR B 193 SER B 196 -1 O THR B 193 N VAL B 164 SHEET 3 E 3 VAL B 203 SER B 204 -1 O VAL B 203 N TYR B 194 SHEET 1 F 2 TYR B 167 ARG B 168 0 SHEET 2 F 2 TRP B 174 THR B 175 -1 O THR B 175 N TYR B 167 SSBOND 1 CYS A 99 CYS A 138 1555 1555 2.02 SSBOND 2 CYS A 102 CYS A 115 1555 1555 2.10 SSBOND 3 CYS A 128 CYS A 214 1555 1555 2.04 SSBOND 4 CYS A 132 CYS A 216 1555 1555 2.03 SSBOND 5 CYS A 192 CYS A 208 1555 1555 2.11 SSBOND 6 CYS B 99 CYS B 138 1555 1555 2.05 SSBOND 7 CYS B 102 CYS B 115 1555 1555 2.11 SSBOND 8 CYS B 128 CYS B 214 1555 1555 1.99 SSBOND 9 CYS B 132 CYS B 216 1555 1555 2.05 SSBOND 10 CYS B 192 CYS B 208 1555 1555 2.10 CRYST1 64.792 67.469 79.463 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015434 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014822 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012584 0.00000