HEADER LIGASE 25-NOV-08 3FDE TITLE MOUSE UHRF1 SRA DOMAIN BOUND WITH HEMI-METHYLATED CPG DNA, CRYSTAL TITLE 2 STRUCTURE IN SPACE GROUP C222(1) AT 1.4 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE UHRF1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: YDG DOMAIN: UNP RESIDUES 419-628; COMPND 5 SYNONYM: UBIQUITIN-LIKE PHD AND RING FINGER DOMAIN-CONTAINING PROTEIN COMPND 6 1, UBIQUITIN-LIKE-CONTAINING PHD AND RING FINGER DOMAINS PROTEIN 1, COMPND 7 NUCLEAR ZINC FINGER PROTEIN NP95, NUCLEAR PROTEIN 95; COMPND 8 EC: 6.3.2.-; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: 5'-D(*CP*CP*AP*TP*GP*(5CM)P*GP*CP*TP*GP*AP*C)-3'; COMPND 12 CHAIN: D, C; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 3; COMPND 15 MOLECULE: 5'-D(*GP*TP*CP*AP*GP*CP*GP*CP*AP*TP*GP*G)-3'; COMPND 16 CHAIN: E, F; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_TAXID: 10090; SOURCE 4 GENE: NP95, UHRF1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PXC666; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 OTHER_DETAILS: SYNTHETIC DNA OLIGO; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES; SOURCE 14 OTHER_DETAILS: SYNTHETIC DNA OLIGO KEYWDS SRA DOMAIN, BASE FLIPPING, DNA CPG METHYLATION, CELL CYCLE, KEYWDS 2 DEVELOPMENTAL PROTEIN, DNA DAMAGE, DNA REPAIR, DNA-BINDING, LIGASE, KEYWDS 3 METAL-BINDING, NUCLEUS, PHOSPHOPROTEIN, TRANSCRIPTION, TRANSCRIPTION KEYWDS 4 REGULATION, UBL CONJUGATION, UBL CONJUGATION PATHWAY, ZINC, ZINC- KEYWDS 5 FINGER EXPDTA X-RAY DIFFRACTION AUTHOR H.HASHIMOTO,J.R.HORTON,X.ZHANG,X.CHENG REVDAT 4 27-DEC-23 3FDE 1 REMARK DBREF SEQADV LINK REVDAT 3 24-MAR-09 3FDE 1 JRNL REVDAT 2 20-JAN-09 3FDE 1 JRNL REVDAT 1 06-JAN-09 3FDE 0 JRNL AUTH H.HASHIMOTO,J.R.HORTON,X.ZHANG,X.CHENG JRNL TITL UHRF1, A MODULAR MULTI-DOMAIN PROTEIN, REGULATES JRNL TITL 2 REPLICATION-COUPLED CROSSTALK BETWEEN DNA METHYLATION AND JRNL TITL 3 HISTONE MODIFICATIONS. JRNL REF EPIGENETICS V. 4 8 2009 JRNL REFN ISSN 1559-2294 JRNL PMID 19077538 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH H.HASHIMOTO,J.R.HORTON,X.ZHANG,M.BOSTICK,S.E.JACOBSEN, REMARK 1 AUTH 2 X.CHENG REMARK 1 TITL THE SRA DOMAIN OF UHRF1 FLIPS 5-METHYLCYTOSINE OUT OF THE REMARK 1 TITL 2 DNA HELIX. REMARK 1 REF NATURE V. 455 826 2008 REMARK 1 REFN ISSN 0028-0836 REMARK 1 PMID 18772888 REMARK 1 DOI 10.1038/NATURE07280 REMARK 2 REMARK 2 RESOLUTION. 1.41 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0044 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.41 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.79 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 3 NUMBER OF REFLECTIONS : 114952 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.151 REMARK 3 R VALUE (WORKING SET) : 0.149 REMARK 3 FREE R VALUE : 0.186 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 6067 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.41 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.45 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5243 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 60.41 REMARK 3 BIN R VALUE (WORKING SET) : 0.4810 REMARK 3 BIN FREE R VALUE SET COUNT : 279 REMARK 3 BIN FREE R VALUE : 0.4530 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3244 REMARK 3 NUCLEIC ACID ATOMS : 974 REMARK 3 HETEROGEN ATOMS : 114 REMARK 3 SOLVENT ATOMS : 680 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.03000 REMARK 3 B22 (A**2) : -0.08000 REMARK 3 B33 (A**2) : 0.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.060 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.057 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.035 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.047 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.975 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.962 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4662 ; 0.022 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6454 ; 2.120 ; 2.228 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 436 ; 5.563 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 178 ;32.399 ;22.528 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 550 ;12.581 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 40 ;18.863 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 651 ; 0.205 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3326 ; 0.015 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2117 ; 2.189 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3380 ; 3.161 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2476 ; 4.075 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3035 ; 5.494 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 4658 ; 2.613 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 704 ;10.095 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 4454 ; 6.561 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3FDE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-DEC-08. REMARK 100 THE DEPOSITION ID IS D_1000050450. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-AUG-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 121098 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.410 REMARK 200 RESOLUTION RANGE LOW (A) : 32.790 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : 0.09500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.41 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.45 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 1.70 REMARK 200 R MERGE FOR SHELL (I) : 0.77100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 0.4M NACL, PH 7.0, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.91900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 74.91900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 42.33900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 51.84550 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 42.33900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 51.84550 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 74.91900 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 42.33900 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 51.84550 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 74.91900 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 42.33900 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 51.84550 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: ASYMMETRIC UNIT CONTAINS TWO SRA-DNA COMPLEXES. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 627 REMARK 465 ARG A 628 REMARK 465 GLU B 623 REMARK 465 LYS B 624 REMARK 465 SER B 625 REMARK 465 ARG B 626 REMARK 465 LYS B 627 REMARK 465 ARG B 628 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 417 N CA CB CG ND1 CD2 CE1 REMARK 470 HIS A 417 NE2 REMARK 470 ARG A 596 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 613 CG CD OE1 OE2 REMARK 470 LYS A 622 CG CD CE NZ REMARK 470 GLU A 623 CG CD OE1 OE2 REMARK 470 ARG A 626 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 547 CG CD CE NZ REMARK 470 GLU B 613 CG CD OE1 OE2 REMARK 470 GLU B 617 CG CD OE1 OE2 REMARK 470 ASN B 621 CG OD1 ND2 REMARK 470 LYS B 622 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN B 479 O1 UNL B 655 1.94 REMARK 500 O HOH B 336 O HOH B 852 2.01 REMARK 500 O LYS A 544 O HOH A 653 2.16 REMARK 500 O1 UNL C 456 O2 UNL C 637 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 529 CD GLU A 529 OE2 0.078 REMARK 500 GLU A 592 CG GLU A 592 CD 0.113 REMARK 500 SER B 575 CB SER B 575 OG 0.086 REMARK 500 GLU B 590 CG GLU B 590 CD 0.102 REMARK 500 DT D 405 C5 DT D 405 C7 0.049 REMARK 500 DG D 408 N7 DG D 408 C8 0.037 REMARK 500 DC D 409 N1 DC D 409 C6 0.037 REMARK 500 DA E 429 C5 DA E 429 N7 0.038 REMARK 500 DG C 406 O3' 5CM C 407 P 0.155 REMARK 500 DG C 406 O3' 5CM C 407 P 0.143 REMARK 500 DG C 408 P DG C 408 OP1 0.131 REMARK 500 DC C 409 O3' DC C 409 C3' -0.039 REMARK 500 DC F 423 O3' DC F 423 C3' -0.048 REMARK 500 DT F 430 C5 DT F 430 C7 0.046 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 418 CG - SD - CE ANGL. DEV. = 27.1 DEGREES REMARK 500 ARG A 448 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG B 511 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG B 511 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 DC D 402 O4' - C1' - C2' ANGL. DEV. = 3.3 DEGREES REMARK 500 DC D 403 N1 - C2 - O2 ANGL. DEV. = -4.0 DEGREES REMARK 500 DA D 404 O4' - C1' - N9 ANGL. DEV. = -6.8 DEGREES REMARK 500 DG D 406 C2 - N3 - C4 ANGL. DEV. = 3.2 DEGREES REMARK 500 DG D 406 C5 - C6 - N1 ANGL. DEV. = 5.6 DEGREES REMARK 500 5CM D 407 C3' - O3' - P ANGL. DEV. = 9.1 DEGREES REMARK 500 DG D 408 C5 - C6 - N1 ANGL. DEV. = -3.2 DEGREES REMARK 500 DC D 409 O4' - C4' - C3' ANGL. DEV. = -2.5 DEGREES REMARK 500 DG D 411 OP1 - P - OP2 ANGL. DEV. = 13.2 DEGREES REMARK 500 DG D 411 O5' - P - OP2 ANGL. DEV. = -8.2 DEGREES REMARK 500 DG D 411 O4' - C1' - C2' ANGL. DEV. = 4.2 DEGREES REMARK 500 DG D 411 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 DA D 412 O4' - C1' - N9 ANGL. DEV. = -4.8 DEGREES REMARK 500 DA D 412 N1 - C2 - N3 ANGL. DEV. = -4.2 DEGREES REMARK 500 DG E 421 C6 - N1 - C2 ANGL. DEV. = -5.6 DEGREES REMARK 500 DG E 421 N1 - C2 - N3 ANGL. DEV. = 5.0 DEGREES REMARK 500 DG E 421 C4 - C5 - N7 ANGL. DEV. = -3.4 DEGREES REMARK 500 DG E 421 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 DG E 421 N9 - C4 - C5 ANGL. DEV. = 3.6 DEGREES REMARK 500 DG E 421 N3 - C2 - N2 ANGL. DEV. = -5.5 DEGREES REMARK 500 DG E 421 N1 - C6 - O6 ANGL. DEV. = -4.2 DEGREES REMARK 500 DT E 422 O5' - C5' - C4' ANGL. DEV. = -4.9 DEGREES REMARK 500 DT E 422 O4' - C4' - C3' ANGL. DEV. = 3.9 DEGREES REMARK 500 DT E 422 O4' - C1' - N1 ANGL. DEV. = -6.3 DEGREES REMARK 500 DT E 422 N3 - C4 - O4 ANGL. DEV. = 4.2 DEGREES REMARK 500 DT E 422 C3' - O3' - P ANGL. DEV. = 8.0 DEGREES REMARK 500 DC E 423 O5' - C5' - C4' ANGL. DEV. = -4.8 DEGREES REMARK 500 DC E 423 O4' - C4' - C3' ANGL. DEV. = -8.1 DEGREES REMARK 500 DC E 423 C1' - O4' - C4' ANGL. DEV. = -8.8 DEGREES REMARK 500 DC E 423 C4' - C3' - C2' ANGL. DEV. = -4.6 DEGREES REMARK 500 DC E 423 C2 - N3 - C4 ANGL. DEV. = 3.2 DEGREES REMARK 500 DA E 424 O5' - C5' - C4' ANGL. DEV. = -5.8 DEGREES REMARK 500 DA E 424 N1 - C2 - N3 ANGL. DEV. = -3.2 DEGREES REMARK 500 DA E 424 C4 - C5 - N7 ANGL. DEV. = 3.4 DEGREES REMARK 500 DG E 425 C3' - C2' - C1' ANGL. DEV. = -6.4 DEGREES REMARK 500 DG E 425 O4' - C1' - N9 ANGL. DEV. = 2.8 DEGREES REMARK 500 DC E 426 O4' - C4' - C3' ANGL. DEV. = -2.6 DEGREES REMARK 500 DC E 426 O4' - C1' - C2' ANGL. DEV. = 3.4 DEGREES REMARK 500 DC E 426 O4' - C1' - N1 ANGL. DEV. = -5.5 DEGREES REMARK 500 DC E 426 C6 - N1 - C2 ANGL. DEV. = -4.2 DEGREES REMARK 500 DC E 426 C2 - N3 - C4 ANGL. DEV. = 5.2 DEGREES REMARK 500 DC E 426 N3 - C4 - C5 ANGL. DEV. = -2.5 DEGREES REMARK 500 DC E 426 C4 - C5 - C6 ANGL. DEV. = -3.6 DEGREES REMARK 500 DC E 426 C5 - C6 - N1 ANGL. DEV. = 7.1 DEGREES REMARK 500 DC E 428 C6 - N1 - C2 ANGL. DEV. = -4.2 DEGREES REMARK 500 DA E 429 O4' - C1' - N9 ANGL. DEV. = -4.4 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 96 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 418 134.66 -37.21 REMARK 500 ASP A 460 -59.43 -132.82 REMARK 500 ASN A 508 -127.17 54.35 REMARK 500 ASP B 460 -64.24 -136.46 REMARK 500 SER B 501 10.63 -140.57 REMARK 500 ASN B 508 -129.28 53.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA E 504 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 EDO D 502 O1 REMARK 620 2 EDO D 502 O2 72.4 REMARK 620 3 HOH D 621 O 83.9 96.7 REMARK 620 4 DT E 430 O2 169.7 98.3 93.0 REMARK 620 5 DG E 431 O4' 96.9 167.7 88.1 92.8 REMARK 620 6 EDO E 501 O2 88.2 86.7 170.0 95.8 86.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA F 503 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH C 33 O REMARK 620 2 EDO C 505 O1 95.3 REMARK 620 3 EDO C 505 O2 86.2 71.1 REMARK 620 4 DT F 430 O2 90.7 97.5 167.9 REMARK 620 5 DG F 431 O4' 90.1 168.8 99.5 92.2 REMARK 620 6 EDO F 506 O2 170.5 87.8 86.3 97.8 85.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 629 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 630 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 631 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 632 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 633 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 634 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 635 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 636 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 637 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL A 638 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL A 654 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 629 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 630 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 631 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 632 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 633 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 634 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL B 655 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL B 322 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL B 215 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL B 636 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO D 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO E 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO E 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA E 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL C 359 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL C 456 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL C 637 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO F 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO F 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO F 510 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO F 511 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO F 513 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA F 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2ZO0 RELATED DB: PDB REMARK 900 SRA-DNA COMPLEX IN P2(1)2(1)2(1) SPACE GROUP REMARK 900 RELATED ID: 2ZO1 RELATED DB: PDB REMARK 900 SRA-DNA COMPLEX IN P4(1)2(1)2 SPACE GROUP REMARK 900 RELATED ID: 2ZO2 RELATED DB: PDB REMARK 900 SRA-DNA NON-SPECIFIC COMPLEX IN P6(1)22 SPACE GROUP REMARK 900 RELATED ID: 3F8I RELATED DB: PDB REMARK 900 SRA-DNA COMPLEX IN P2(1) SPACE GROUP REMARK 900 RELATED ID: 3F8J RELATED DB: PDB REMARK 900 SRA-DNA COMPLEX IN C222(1) SPACE GROUP DBREF 3FDE A 419 628 UNP Q8VDF2 UHRF1_MOUSE 419 628 DBREF 3FDE B 419 628 UNP Q8VDF2 UHRF1_MOUSE 419 628 DBREF 3FDE D 402 413 PDB 3FDE 3FDE 402 413 DBREF 3FDE E 421 432 PDB 3FDE 3FDE 421 432 DBREF 3FDE C 402 413 PDB 3FDE 3FDE 402 413 DBREF 3FDE F 421 432 PDB 3FDE 3FDE 421 432 SEQADV 3FDE HIS A 417 UNP Q8VDF2 EXPRESSION TAG SEQADV 3FDE MET A 418 UNP Q8VDF2 EXPRESSION TAG SEQADV 3FDE HIS B 417 UNP Q8VDF2 EXPRESSION TAG SEQADV 3FDE MET B 418 UNP Q8VDF2 EXPRESSION TAG SEQRES 1 A 212 HIS MET PRO ALA ASN HIS PHE GLY PRO ILE PRO GLY VAL SEQRES 2 A 212 PRO VAL GLY THR MET TRP ARG PHE ARG VAL GLN VAL SER SEQRES 3 A 212 GLU SER GLY VAL HIS ARG PRO HIS VAL ALA GLY ILE HIS SEQRES 4 A 212 GLY ARG SER ASN ASP GLY ALA TYR SER LEU VAL LEU ALA SEQRES 5 A 212 GLY GLY TYR GLU ASP ASP VAL ASP ASN GLY ASN TYR PHE SEQRES 6 A 212 THR TYR THR GLY SER GLY GLY ARG ASP LEU SER GLY ASN SEQRES 7 A 212 LYS ARG THR ALA GLY GLN SER SER ASP GLN LYS LEU THR SEQRES 8 A 212 ASN ASN ASN ARG ALA LEU ALA LEU ASN CYS HIS SER PRO SEQRES 9 A 212 ILE ASN GLU LYS GLY ALA GLU ALA GLU ASP TRP ARG GLN SEQRES 10 A 212 GLY LYS PRO VAL ARG VAL VAL ARG ASN MET LYS GLY GLY SEQRES 11 A 212 LYS HIS SER LYS TYR ALA PRO ALA GLU GLY ASN ARG TYR SEQRES 12 A 212 ASP GLY ILE TYR LYS VAL VAL LYS TYR TRP PRO GLU ARG SEQRES 13 A 212 GLY LYS SER GLY PHE LEU VAL TRP ARG TYR LEU LEU ARG SEQRES 14 A 212 ARG ASP ASP THR GLU PRO GLU PRO TRP THR ARG GLU GLY SEQRES 15 A 212 LYS ASP ARG THR ARG GLN LEU GLY LEU THR MET GLN TYR SEQRES 16 A 212 PRO GLU GLY TYR LEU GLU ALA LEU ALA ASN LYS GLU LYS SEQRES 17 A 212 SER ARG LYS ARG SEQRES 1 B 212 HIS MET PRO ALA ASN HIS PHE GLY PRO ILE PRO GLY VAL SEQRES 2 B 212 PRO VAL GLY THR MET TRP ARG PHE ARG VAL GLN VAL SER SEQRES 3 B 212 GLU SER GLY VAL HIS ARG PRO HIS VAL ALA GLY ILE HIS SEQRES 4 B 212 GLY ARG SER ASN ASP GLY ALA TYR SER LEU VAL LEU ALA SEQRES 5 B 212 GLY GLY TYR GLU ASP ASP VAL ASP ASN GLY ASN TYR PHE SEQRES 6 B 212 THR TYR THR GLY SER GLY GLY ARG ASP LEU SER GLY ASN SEQRES 7 B 212 LYS ARG THR ALA GLY GLN SER SER ASP GLN LYS LEU THR SEQRES 8 B 212 ASN ASN ASN ARG ALA LEU ALA LEU ASN CYS HIS SER PRO SEQRES 9 B 212 ILE ASN GLU LYS GLY ALA GLU ALA GLU ASP TRP ARG GLN SEQRES 10 B 212 GLY LYS PRO VAL ARG VAL VAL ARG ASN MET LYS GLY GLY SEQRES 11 B 212 LYS HIS SER LYS TYR ALA PRO ALA GLU GLY ASN ARG TYR SEQRES 12 B 212 ASP GLY ILE TYR LYS VAL VAL LYS TYR TRP PRO GLU ARG SEQRES 13 B 212 GLY LYS SER GLY PHE LEU VAL TRP ARG TYR LEU LEU ARG SEQRES 14 B 212 ARG ASP ASP THR GLU PRO GLU PRO TRP THR ARG GLU GLY SEQRES 15 B 212 LYS ASP ARG THR ARG GLN LEU GLY LEU THR MET GLN TYR SEQRES 16 B 212 PRO GLU GLY TYR LEU GLU ALA LEU ALA ASN LYS GLU LYS SEQRES 17 B 212 SER ARG LYS ARG SEQRES 1 D 12 DC DC DA DT DG 5CM DG DC DT DG DA DC SEQRES 1 E 12 DG DT DC DA DG DC DG DC DA DT DG DG SEQRES 1 C 12 DC DC DA DT DG 5CM DG DC DT DG DA DC SEQRES 1 F 12 DG DT DC DA DG DC DG DC DA DT DG DG MODRES 3FDE 5CM D 407 DC MODRES 3FDE 5CM C 407 DC HET 5CM D 407 20 HET 5CM C 407 40 HET EDO A 629 4 HET EDO A 630 4 HET EDO A 631 4 HET EDO A 632 4 HET EDO A 633 4 HET EDO A 634 4 HET EDO A 635 4 HET EDO A 636 4 HET NA A 637 1 HET UNL A 638 2 HET UNL A 654 2 HET EDO B 629 4 HET EDO B 630 4 HET EDO B 631 4 HET EDO B 632 4 HET EDO B 633 4 HET NA B 634 1 HET UNL B 655 5 HET UNL B 322 3 HET UNL B 215 2 HET UNL B 636 2 HET EDO D 502 4 HET EDO E 501 4 HET EDO E 503 4 HET NA E 504 1 HET EDO C 505 4 HET UNL C 359 2 HET UNL C 456 2 HET UNL C 637 2 HET EDO F 506 4 HET EDO F 509 4 HET EDO F 510 4 HET EDO F 511 4 HET EDO F 513 4 HET NA F 503 1 HETNAM 5CM 5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE HETNAM EDO 1,2-ETHANEDIOL HETNAM NA SODIUM ION HETNAM UNL UNKNOWN LIGAND HETSYN EDO ETHYLENE GLYCOL FORMUL 3 5CM 2(C10 H16 N3 O7 P) FORMUL 7 EDO 22(C2 H6 O2) FORMUL 15 NA 4(NA 1+) FORMUL 42 HOH *680(H2 O) HELIX 1 1 PHE A 437 SER A 444 1 8 HELIX 2 2 THR A 507 ASN A 516 1 10 HELIX 3 3 ASP A 530 GLY A 534 5 5 HELIX 4 4 THR A 595 GLY A 606 1 12 HELIX 5 5 GLY A 614 GLU A 623 1 10 HELIX 6 6 PHE B 437 SER B 444 1 8 HELIX 7 7 THR B 507 ASN B 516 1 10 HELIX 8 8 ASP B 530 GLY B 534 5 5 HELIX 9 9 LYS B 544 HIS B 548 5 5 HELIX 10 10 THR B 595 LEU B 605 1 11 HELIX 11 11 GLY B 614 ASN B 621 1 8 SHEET 1 A 5 MET A 434 TRP A 435 0 SHEET 2 A 5 ASN A 557 ARG A 572 -1 O ASN A 557 N TRP A 435 SHEET 3 A 5 LEU A 578 ARG A 586 -1 O VAL A 579 N GLU A 571 SHEET 4 A 5 TYR A 480 THR A 484 -1 N TYR A 483 O TYR A 582 SHEET 5 A 5 VAL A 475 ASP A 476 -1 N VAL A 475 O THR A 482 SHEET 1 B 5 ILE A 454 ARG A 457 0 SHEET 2 B 5 GLY A 461 LEU A 467 -1 O SER A 464 N HIS A 455 SHEET 3 B 5 VAL A 537 ASN A 542 1 O ASN A 542 N LEU A 467 SHEET 4 B 5 ASN A 557 ARG A 572 -1 O ASP A 560 N VAL A 539 SHEET 5 B 5 ALA A 526 GLU A 527 -1 N ALA A 526 O TYR A 568 SHEET 1 C 5 MET B 434 TRP B 435 0 SHEET 2 C 5 ASN B 557 ARG B 572 -1 O ASN B 557 N TRP B 435 SHEET 3 C 5 LEU B 578 ARG B 586 -1 O VAL B 579 N GLU B 571 SHEET 4 C 5 TYR B 480 THR B 484 -1 N PHE B 481 O LEU B 584 SHEET 5 C 5 VAL B 475 ASP B 476 -1 N VAL B 475 O THR B 482 SHEET 1 D 5 ILE B 454 ARG B 457 0 SHEET 2 D 5 GLY B 461 LEU B 467 -1 O TYR B 463 N HIS B 455 SHEET 3 D 5 VAL B 537 ASN B 542 1 O ASN B 542 N LEU B 467 SHEET 4 D 5 ASN B 557 ARG B 572 -1 O ASP B 560 N VAL B 539 SHEET 5 D 5 ALA B 526 GLU B 527 -1 N ALA B 526 O TYR B 568 LINK O3' DG D 406 P 5CM D 407 1555 1555 1.68 LINK O3' 5CM D 407 P DG D 408 1555 1555 1.57 LINK O3'A5CM C 407 P A DG C 408 1555 1555 1.61 LINK O3'B5CM C 407 P B DG C 408 1555 1555 1.60 LINK O1 EDO D 502 NA NA E 504 1555 1555 2.48 LINK O2 EDO D 502 NA NA E 504 1555 1555 2.41 LINK O HOH D 621 NA NA E 504 1555 1555 2.33 LINK O2 DT E 430 NA NA E 504 1555 1555 2.33 LINK O4' DG E 431 NA NA E 504 1555 1555 2.57 LINK O2 EDO E 501 NA NA E 504 1555 1555 2.42 LINK O HOH C 33 NA NA F 503 1555 1555 2.34 LINK O1 EDO C 505 NA NA F 503 1555 1555 2.38 LINK O2 EDO C 505 NA NA F 503 1555 1555 2.43 LINK O2 DT F 430 NA NA F 503 1555 1555 2.32 LINK O4' DG F 431 NA NA F 503 1555 1555 2.60 LINK NA NA F 503 O2 EDO F 506 1555 1555 2.36 SITE 1 AC1 6 ASN A 479 ARG A 586 ASP A 587 ASP A 588 SITE 2 AC1 6 HOH A 662 UNL C 359 SITE 1 AC2 5 HOH A 286 HOH A 374 PRO A 536 LYS A 564 SITE 2 AC2 5 HOH A 857 SITE 1 AC3 7 HOH A 42 ASP A 476 GLY A 545 GLY A 546 SITE 2 AC3 7 HOH A 651 HOH A 653 HOH A 700 SITE 1 AC4 7 SER A 549 LYS A 550 TYR A 551 ALA A 552 SITE 2 AC4 7 ARG A 558 TRP A 594 LYS A 599 SITE 1 AC5 6 ASN A 459 ARG A 511 HOH A 682 HOH B 144 SITE 2 AC5 6 HOH B 325 PRO B 430 SITE 1 AC6 6 ASP A 460 LYS A 535 HOH A 661 ARG B 601 SITE 2 AC6 6 GLN B 604 HOH B 650 SITE 1 AC7 7 SER A 442 GLU A 443 ARG A 448 HOH A 756 SITE 2 AC7 7 HOH A 856 DA E 429 DT E 430 SITE 1 AC8 4 ASP A 530 TRP A 531 ARG A 532 GLN A 533 SITE 1 AC9 6 PRO A 449 HIS A 450 VAL A 451 ALA A 452 SITE 2 AC9 6 DG D 406 HOH E 115 SITE 1 BC1 7 LEU A 515 ASN A 516 CYS A 517 HIS A 518 SITE 2 BC1 7 GLN A 533 GLY A 534 GLN B 604 SITE 1 BC2 5 HOH A 410 ARG A 581 HOH A 813 ARG B 572 SITE 2 BC2 5 HOH F 835 SITE 1 BC3 7 THR A 602 ARG A 603 GLY A 606 LEU A 607 SITE 2 BC3 7 HOH B 267 GLU B 529 TRP B 531 SITE 1 BC4 5 HOH B 106 HOH B 141 ASP B 476 GLY B 545 SITE 2 BC4 5 HIS B 548 SITE 1 BC5 6 HOH B 102 HOH B 305 ARG B 586 ASP B 588 SITE 2 BC5 6 THR B 589 GLU B 590 SITE 1 BC6 2 HOH B 671 HOH C 18 SITE 1 BC7 6 HOH A 212 GLU A 472 ARG B 572 GLY B 573 SITE 2 BC7 6 LYS B 574 GLY B 576 SITE 1 BC8 5 HIS B 450 VAL B 451 ALA B 452 DG C 406 SITE 2 BC8 5 HOH F 72 SITE 1 BC9 5 ARG A 603 GLN A 604 ASN B 479 TYR B 480 SITE 2 BC9 5 ARG B 585 SITE 1 CC1 12 HOH B 347 LEU B 515 ASN B 516 CYS B 517 SITE 2 CC1 12 HIS B 518 GLN B 533 GLY B 534 HOH B 660 SITE 3 CC1 12 HOH B 692 HOH B 694 DT D 405 DG D 406 SITE 1 CC2 5 HOH B 335 ASP B 476 SER B 549 LYS B 550 SITE 2 CC2 5 TYR B 551 SITE 1 CC3 8 GLY B 487 GLY B 488 ARG B 489 SER B 502 SITE 2 CC3 8 HOH B 638 HOH C 183 UNL C 456 UNL C 637 SITE 1 CC4 7 ASN A 509 DT D 405 HOH E 128 DT E 430 SITE 2 CC4 7 DG E 431 EDO E 501 NA E 504 SITE 1 CC5 8 DA D 404 DT D 405 EDO D 502 DT E 430 SITE 2 CC5 8 DG E 431 DG E 432 NA E 504 HOH E 855 SITE 1 CC6 5 THR A 497 DC E 423 DA E 424 DG E 425 SITE 2 CC6 5 HOH E 446 SITE 1 CC7 5 EDO D 502 HOH D 621 DT E 430 DG E 431 SITE 2 CC7 5 EDO E 501 SITE 1 CC8 6 ASN B 509 DT C 405 HOH F 59 DT F 430 SITE 2 CC8 6 NA F 503 EDO F 506 SITE 1 CC9 5 ASN A 479 ARG A 586 EDO A 629 HOH C 70 SITE 2 CC9 5 DC C 402 SITE 1 DC1 7 GLY B 487 UNL B 636 HOH C 56 HOH C 183 SITE 2 DC1 7 DT C 405 DG C 406 UNL C 637 SITE 1 DC2 8 ARG B 489 LEU B 491 UNL B 636 HOH C 113 SITE 2 DC2 8 HOH C 135 DT C 405 DG C 406 UNL C 456 SITE 1 DC3 8 DA C 404 DT C 405 EDO C 505 HOH F 264 SITE 2 DC3 8 DT F 430 DG F 431 DG F 432 NA F 503 SITE 1 DC4 3 DG F 431 DG F 432 EDO F 510 SITE 1 DC5 7 VAL A 566 LEU A 583 ARG A 585 ARG B 457 SITE 2 DC5 7 HOH F 219 DG F 431 EDO F 509 SITE 1 DC6 2 ARG A 585 DG F 431 SITE 1 DC7 6 THR B 497 HOH B 639 HOH F 327 DC F 423 SITE 2 DC7 6 DA F 424 DG F 425 SITE 1 DC8 5 HOH C 33 EDO C 505 DT F 430 DG F 431 SITE 2 DC8 5 EDO F 506 CRYST1 84.678 103.691 149.838 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011809 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009644 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006674 0.00000