HEADER SUGAR BINDING PROTEIN 25-NOV-08 3FDH TITLE CRYSTAL STRUCTURE OF A SUSD/RAGB FAMILY PROTEIN (BT_2033) FROM TITLE 2 BACTEROIDES THETAIOTAOMICRON VPI-5482 AT 1.75 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUSD HOMOLOG; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES THETAIOTAOMICRON VPI-5482; SOURCE 3 ORGANISM_TAXID: 226186; SOURCE 4 GENE: BT_2033, NP_810946.1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, PSI-2, SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 7 01-FEB-23 3FDH 1 REMARK SEQADV REVDAT 6 24-JUL-19 3FDH 1 REMARK LINK REVDAT 5 01-NOV-17 3FDH 1 REMARK REVDAT 4 13-JUL-11 3FDH 1 VERSN REVDAT 3 23-MAR-11 3FDH 1 TITLE KEYWDS REVDAT 2 24-NOV-09 3FDH 1 TITLE REVDAT 1 16-DEC-08 3FDH 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF SUSD HOMOLOG (NP_810946.1) FROM JRNL TITL 2 BACTEROIDES THETAIOTAOMICRON VPI-5482 AT 1.75 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.4.0067 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.55 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 58982 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.159 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.189 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2984 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4126 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.93 REMARK 3 BIN R VALUE (WORKING SET) : 0.2510 REMARK 3 BIN FREE R VALUE SET COUNT : 205 REMARK 3 BIN FREE R VALUE : 0.2840 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3646 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 13 REMARK 3 SOLVENT ATOMS : 633 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 21.04 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.65000 REMARK 3 B22 (A**2) : 2.82000 REMARK 3 B33 (A**2) : -0.17000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.094 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.094 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.078 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.864 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.961 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3787 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2511 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5148 ; 1.630 ; 1.949 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6117 ; 1.527 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 486 ; 3.983 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 185 ;33.376 ;24.757 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 599 ;11.208 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;15.229 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 556 ; 0.104 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4341 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 790 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2371 ; 1.184 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 963 ; 0.265 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3797 ; 1.973 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1416 ; 3.472 ; 6.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1343 ; 4.756 ; 8.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 39 A 157 REMARK 3 RESIDUE RANGE : A 168 A 520 REMARK 3 ORIGIN FOR THE GROUP (A): 25.6668 34.4610 39.4628 REMARK 3 T TENSOR REMARK 3 T11: -0.0979 T22: -0.1245 REMARK 3 T33: -0.0930 T12: -0.0031 REMARK 3 T13: -0.0203 T23: -0.0296 REMARK 3 L TENSOR REMARK 3 L11: 0.9400 L22: 0.5093 REMARK 3 L33: 0.8877 L12: 0.0796 REMARK 3 L13: -0.1100 L23: -0.0726 REMARK 3 S TENSOR REMARK 3 S11: 0.0178 S12: -0.1165 S13: 0.0131 REMARK 3 S21: 0.0433 S22: -0.0273 S23: -0.0206 REMARK 3 S31: 0.0118 S32: 0.0248 S33: 0.0095 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. ATOM RECORDS CONTAIN RESIDUAL B FACTORS REMARK 3 ONLY. 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE REMARK 3 ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED REMARK 3 SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4. REMARK 3 RAMACHANDRAN OUTLIER RESIDUE 330 IS SUPPORTED BY DENSITY. 5. PEG- REMARK 3 200 MOLECULE FROM THE CRYO SOLUTION IS MODELED. REMARK 4 REMARK 4 3FDH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-NOV-08. REMARK 100 THE DEPOSITION ID IS D_1000050453. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-NOV-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91162,0.97871,0.97799 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.2.5 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58982 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 29.553 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.11800 REMARK 200 R SYM (I) : 0.11800 REMARK 200 FOR THE DATA SET : 4.4490 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.68600 REMARK 200 R SYM FOR SHELL (I) : 0.68600 REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30.0000% PEG-6000, 0.1M HEPES PH 7.0, REMARK 280 NANODROP, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 41.92700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 58.35400 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 59.48200 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 41.92700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 58.35400 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 59.48200 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 41.92700 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 58.35400 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 59.48200 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 41.92700 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 58.35400 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 59.48200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT RYSTAL PACKING ANALYSIS SUGGESTS THE REMARK 300 ASSIGNMENT OF A MONOMER AS THE SIGNIFICANT OLIGOMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 22 REMARK 465 SER A 23 REMARK 465 GLU A 24 REMARK 465 ASP A 25 REMARK 465 THR A 26 REMARK 465 MSE A 27 REMARK 465 ASP A 28 REMARK 465 ARG A 29 REMARK 465 ILE A 30 REMARK 465 ASN A 31 REMARK 465 LYS A 32 REMARK 465 ASP A 33 REMARK 465 HIS A 34 REMARK 465 ASP A 35 REMARK 465 HIS A 36 REMARK 465 THR A 37 REMARK 465 THR A 38 REMARK 465 LEU A 158 REMARK 465 VAL A 159 REMARK 465 ASP A 160 REMARK 465 GLU A 161 REMARK 465 LYS A 162 REMARK 465 GLY A 163 REMARK 465 SER A 164 REMARK 465 PRO A 165 REMARK 465 VAL A 166 REMARK 465 TYR A 167 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 108 CE NZ REMARK 470 GLU A 119 CG CD OE1 OE2 REMARK 470 MSE A 168 CG SE CE REMARK 470 LYS A 311 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 78 -136.15 53.80 REMARK 500 ASN A 88 -47.50 69.90 REMARK 500 CYS A 153 -68.63 -157.83 REMARK 500 LYS A 195 -137.64 -102.38 REMARK 500 ASN A 236 87.23 -159.22 REMARK 500 SER A 251 -151.50 -112.09 REMARK 500 SER A 330 33.74 -150.19 REMARK 500 SER A 334 144.54 -174.08 REMARK 500 ASN A 407 -157.12 -95.56 REMARK 500 VAL A 424 -52.87 -128.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 393011 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT (RESIDUE 23-520) WAS EXPRESSED WITH A PURIFICATION REMARK 999 TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3FDH A 23 520 UNP Q8A653 Q8A653_BACTN 23 520 SEQADV 3FDH GLY A 22 UNP Q8A653 EXPRESSION TAG SEQRES 1 A 499 GLY SER GLU ASP THR MSE ASP ARG ILE ASN LYS ASP HIS SEQRES 2 A 499 ASP HIS THR THR SER VAL ALA SER ARG PHE ILE LEU ALA SEQRES 3 A 499 ASP VAL ILE THR SER THR ALA PHE SER ASN ALA SER GLY SEQRES 4 A 499 ASP ILE ASN THR TYR ALA SER SER TYR ILE GLU TYR GLU SEQRES 5 A 499 VAL GLY VAL ASP ASN GLN LEU TYR TYR ALA GLU VAL ARG SEQRES 6 A 499 GLU ASN GLU PRO SER SER SER SER THR PHE ASN ASN SER SEQRES 7 A 499 TRP ASN GLY ILE TYR SER SER LEU LYS ASN ALA ARG ILE SEQRES 8 A 499 ILE ILE ASP GLN CYS GLY GLU GLY GLY ARG ASP HIS GLY SEQRES 9 A 499 ASN ASP VAL THR ARG GLY MSE ALA GLU VAL MSE ALA ALA SEQRES 10 A 499 TYR ASN CYS ALA LEU ILE ALA ASP PHE PHE GLY ASP ALA SEQRES 11 A 499 PRO CYS SER GLN ALA ALA LEU VAL ASP GLU LYS GLY SER SEQRES 12 A 499 PRO VAL TYR MSE THR PRO LYS MSE ASP THR GLN GLN GLU SEQRES 13 A 499 ILE TYR THR GLN ILE ILE SER TYR LEU ASP ASP ALA ILE SEQRES 14 A 499 ALA ASN LEU GLN LYS GLU ASP LEU ALA ASP VAL THR GLU SEQRES 15 A 499 GLN ASP PHE LEU TYR ALA GLY ASP ALA ASP LYS TRP LEU SEQRES 16 A 499 LYS PHE ALA TYR GLY LEU LYS ALA ARG TYR THR MSE ARG SEQRES 17 A 499 LEU ILE ASN ARG SER SER ASN LYS SER ALA ASP TYR GLU SEQRES 18 A 499 LYS VAL LEU ASP TYR VAL SER LYS SER PHE THR SER ALA SEQRES 19 A 499 ASP ASP GLN ALA ALA PHE ASP ILE TYR ASP SER ASN ASN SEQRES 20 A 499 ILE ASN PRO PHE TYR GLY PHE TYR ASN SER ARG ALA GLY SEQRES 21 A 499 PHE GLY ALA SER THR SER LEU GLY THR LYS LEU LEU ALA SEQRES 22 A 499 TYR ASN ASP PRO ARG ALA ASN ARG ALA PHE PHE THR PRO SEQRES 23 A 499 ILE VAL ASP LYS LYS ARG SER GLN VAL ALA ALA ASN ASP SEQRES 24 A 499 PRO SER LEU VAL PRO ALA PRO ASN GLY SER PRO ASP GLN SEQRES 25 A 499 SER THR SER LYS TYR GLY ILE SER ALA PHE VAL TYR ALA SEQRES 26 A 499 LYS THR ALA PRO THR LEU LEU MSE SER TYR HIS GLU LEU SEQRES 27 A 499 MSE PHE LEU LYS ALA GLU ALA LEU CYS ARG LEU ASN ARG SEQRES 28 A 499 ASP ALA GLU ASP ALA LEU LYS GLU ALA VAL VAL ALA GLY SEQRES 29 A 499 LEU LEU ASN ALA GLU ASN SER ILE SER ILE ALA ILE LYS SEQRES 30 A 499 GLU LEU GLY SER GLY LEU ASN THR ASN SER SER GLU VAL SEQRES 31 A 499 ILE THR GLU THR SER ALA GLY LYS TYR PHE ASP ASP VAL SEQRES 32 A 499 VAL LYS ALA LYS TYR ALA ALA ASN PRO LEU GLN GLU THR SEQRES 33 A 499 MSE ILE GLN LYS TYR LEU ALA MSE TRP GLY ALA SER GLY SEQRES 34 A 499 GLU ALA THR GLU THR TYR ASN ASP PHE ARG ARG MSE LYS SEQRES 35 A 499 GLY LEU ASN GLU ASN PHE ILE THR LEU THR ASN PRO ASN SEQRES 36 A 499 ASN SER SER LYS PHE PRO LEU ARG TYR PRO TYR GLY ASN SEQRES 37 A 499 SER ASP THR ALA ALA ASN PRO GLU VAL LYS ALA ALA TYR SEQRES 38 A 499 GLY ASN GLY ASP TYR VAL TYR SER GLU PRO VAL TRP TRP SEQRES 39 A 499 ALA GLY GLY SER ARG MODRES 3FDH MSE A 132 MET SELENOMETHIONINE MODRES 3FDH MSE A 136 MET SELENOMETHIONINE MODRES 3FDH MSE A 168 MET SELENOMETHIONINE MODRES 3FDH MSE A 172 MET SELENOMETHIONINE MODRES 3FDH MSE A 228 MET SELENOMETHIONINE MODRES 3FDH MSE A 354 MET SELENOMETHIONINE MODRES 3FDH MSE A 360 MET SELENOMETHIONINE MODRES 3FDH MSE A 438 MET SELENOMETHIONINE MODRES 3FDH MSE A 445 MET SELENOMETHIONINE MODRES 3FDH MSE A 462 MET SELENOMETHIONINE HET MSE A 132 8 HET MSE A 136 8 HET MSE A 168 5 HET MSE A 172 8 HET MSE A 228 8 HET MSE A 354 8 HET MSE A 360 8 HET MSE A 438 8 HET MSE A 445 8 HET MSE A 462 8 HET PG4 A 1 13 HETNAM MSE SELENOMETHIONINE HETNAM PG4 TETRAETHYLENE GLYCOL FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 2 PG4 C8 H18 O5 FORMUL 3 HOH *633(H2 O) HELIX 1 1 ALA A 41 SER A 56 1 16 HELIX 2 2 GLY A 60 ILE A 70 1 11 HELIX 3 3 ASP A 77 VAL A 85 1 9 HELIX 4 4 ASN A 88 SER A 92 5 5 HELIX 5 5 PHE A 96 CYS A 117 1 22 HELIX 6 6 ASN A 126 GLY A 149 1 24 HELIX 7 7 THR A 174 LEU A 193 1 20 HELIX 8 8 ASP A 211 LEU A 230 1 20 HELIX 9 9 ILE A 231 SER A 234 5 4 HELIX 10 10 ASN A 236 LYS A 250 1 15 HELIX 11 11 SER A 254 GLN A 258 5 5 HELIX 12 12 ASN A 270 ALA A 280 1 11 HELIX 13 13 SER A 285 ASN A 296 1 12 HELIX 14 14 ASP A 297 ARG A 302 5 6 HELIX 15 15 ASP A 320 VAL A 324 5 5 HELIX 16 16 PHE A 343 ALA A 346 5 4 HELIX 17 17 SER A 355 LEU A 370 1 16 HELIX 18 18 ALA A 374 GLY A 401 1 28 HELIX 19 19 THR A 413 VAL A 424 1 12 HELIX 20 20 VAL A 424 ASN A 432 1 9 HELIX 21 21 ASN A 432 MSE A 445 1 14 HELIX 22 22 GLU A 451 LEU A 465 1 15 HELIX 23 23 ASN A 476 PHE A 481 1 6 HELIX 24 24 GLY A 488 ASN A 495 1 8 HELIX 25 25 ASN A 495 GLY A 503 1 9 HELIX 26 26 GLY A 505 SER A 510 5 6 HELIX 27 27 VAL A 513 GLY A 517 5 5 SHEET 1 A 2 GLU A 73 GLY A 75 0 SHEET 2 A 2 PHE A 282 ALA A 284 -1 O GLY A 283 N VAL A 74 SHEET 1 B 2 ALA A 151 PRO A 152 0 SHEET 2 B 2 MSE A 172 ASP A 173 -1 O ASP A 173 N ALA A 151 SHEET 1 C 2 ALA A 259 PHE A 261 0 SHEET 2 C 2 THR A 351 MSE A 354 -1 O THR A 351 N PHE A 261 SHEET 1 D 2 PHE A 304 PHE A 305 0 SHEET 2 D 2 ILE A 340 SER A 341 -1 O ILE A 340 N PHE A 305 SHEET 1 E 2 ARG A 313 SER A 314 0 SHEET 2 E 2 LEU A 404 ASN A 405 1 O ASN A 405 N ARG A 313 LINK C GLY A 131 N MSE A 132 1555 1555 1.32 LINK C MSE A 132 N ALA A 133 1555 1555 1.32 LINK C VAL A 135 N MSE A 136 1555 1555 1.32 LINK C MSE A 136 N ALA A 137 1555 1555 1.33 LINK C MSE A 168 N THR A 169 1555 1555 1.33 LINK C LYS A 171 N MSE A 172 1555 1555 1.32 LINK C MSE A 172 N ASP A 173 1555 1555 1.32 LINK C THR A 227 N MSE A 228 1555 1555 1.32 LINK C MSE A 228 N ARG A 229 1555 1555 1.33 LINK C LEU A 353 N MSE A 354 1555 1555 1.33 LINK C MSE A 354 N SER A 355 1555 1555 1.34 LINK C LEU A 359 N MSE A 360 1555 1555 1.31 LINK C MSE A 360 N PHE A 361 1555 1555 1.33 LINK C THR A 437 N MSE A 438 1555 1555 1.32 LINK C MSE A 438 N ILE A 439 1555 1555 1.34 LINK C ALA A 444 N MSE A 445 1555 1555 1.31 LINK C MSE A 445 N TRP A 446 1555 1555 1.32 LINK C ARG A 461 N MSE A 462 1555 1555 1.34 LINK C MSE A 462 N LYS A 463 1555 1555 1.33 SITE 1 AC1 7 PHE A 459 LYS A 463 GLU A 467 ASN A 468 SITE 2 AC1 7 ASN A 477 PHE A 481 HOH A1036 CRYST1 83.854 116.708 118.964 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011926 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008568 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008406 0.00000