HEADER HYDROLASE 27-NOV-08 3FE2 TITLE HUMAN DEAD-BOX RNA HELICASE DDX5 (P68), CONSERVED DOMAIN I IN COMPLEX TITLE 2 WITH ADP COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE ATP-DEPENDENT RNA HELICASE DDX5; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: DOMAIN I; COMPND 5 SYNONYM: DEAD-BOX RNA HELICASE, DEAD BOX PROTEIN 5, RNA HELICASE P68; COMPND 6 EC: 3.6.1.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DDX5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) R3 PRARE; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC-BSA4 KEYWDS RNA HELICASE, DEAD, ADP, ATP-BINDING, HYDROLASE, NUCLEOTIDE-BINDING, KEYWDS 2 RNA-BINDING, HELICASE, METHYLATION, MRNA PROCESSING, MRNA SPLICING, KEYWDS 3 NUCLEUS, PHOSPHOPROTEIN, SPLICEOSOME, STRUCTURAL GENOMICS, KEYWDS 4 STRUCTURAL GENOMICS CONSORTIUM, SGC EXPDTA X-RAY DIFFRACTION AUTHOR T.KARLBERG,M.I.SIPONEN,C.H.ARROWSMITH,H.BERGLUND,C.BOUNTRA,R.COLLINS, AUTHOR 2 L.G.DAHLGREN,A.M.EDWARDS,S.FLODIN,A.FLORES,S.GRASLUND,M.HAMMARSTROM, AUTHOR 3 A.JOHANSSON,I.JOHANSSON,T.KOTENYOVA,L.LEHTIO,M.MOCHE,M.E.NILSSON, AUTHOR 4 P.NORDLUND,T.NYMAN,C.PERSSON,J.SAGEMARK,A.G.THORSELL,L.TRESAUGUES, AUTHOR 5 S.VAN DEN BERG,J.WEIGELT,M.WELIN,M.WIKSTROM,M.WISNIEWSKA,H.SCHULER, AUTHOR 6 STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 3 01-NOV-23 3FE2 1 REMARK SEQADV REVDAT 2 27-OCT-10 3FE2 1 JRNL REVDAT 1 16-DEC-08 3FE2 0 JRNL AUTH P.SCHUTZ,T.KARLBERG,S.VAN DEN BERG,R.COLLINS,L.LEHTIO, JRNL AUTH 2 M.HOGBOM,L.HOLMBERG-SCHIAVONE,W.TEMPEL,H.W.PARK, JRNL AUTH 3 M.HAMMARSTROM,M.MOCHE,A.G.THORSELL,H.SCHULER JRNL TITL COMPARATIVE STRUCTURAL ANALYSIS OF HUMAN DEAD-BOX RNA JRNL TITL 2 HELICASES JRNL REF PLOS ONE V. 5 12791 2010 JRNL REFN ESSN 1932-6203 JRNL PMID 20941364 JRNL DOI 10.1371/JOURNAL.PONE.0012791 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0035 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.91 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 15770 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 831 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1141 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2870 REMARK 3 BIN FREE R VALUE SET COUNT : 61 REMARK 3 BIN FREE R VALUE : 0.3460 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3696 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 70 REMARK 3 SOLVENT ATOMS : 75 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.99 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.08000 REMARK 3 B22 (A**2) : -1.22000 REMARK 3 B33 (A**2) : 0.15000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.667 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.356 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.262 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.161 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.923 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.866 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3842 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2638 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5228 ; 1.354 ; 1.988 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6410 ; 0.877 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 466 ; 5.863 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 178 ;35.689 ;23.596 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 650 ;18.504 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 36 ;15.821 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 580 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4216 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 764 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2336 ; 0.501 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 936 ; 0.088 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3788 ; 0.979 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1506 ; 1.376 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1440 ; 2.369 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 71 A 304 4 REMARK 3 1 B 71 B 304 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 3157 ; 0.440 ; 0.500 REMARK 3 MEDIUM THERMAL 1 A (A**2): 3157 ; 0.420 ; 2.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3FE2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-DEC-08. REMARK 100 THE DEPOSITION ID IS D_1000050474. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-OCT-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR, SI REMARK 200 -111 CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16601 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 35.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.14200 REMARK 200 R SYM (I) : 0.18800 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.67 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.74200 REMARK 200 R SYM FOR SHELL (I) : 0.72800 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.440 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2I4I REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 17.5% PEG3350, 0.25M LITHIUM SULFATE, REMARK 280 0.1M BIS-TRIS, PH 6.4, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.66000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.66000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 42.28500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 53.43500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 42.28500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 53.43500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 58.66000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 42.28500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 53.43500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 58.66000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 42.28500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 53.43500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 66 REMARK 465 MET A 67 REMARK 465 ARG A 68 REMARK 465 THR A 69 REMARK 465 ALA A 70 REMARK 465 LEU A 305 REMARK 465 GLU A 306 REMARK 465 LEU A 307 REMARK 465 SER B 66 REMARK 465 MET B 67 REMARK 465 ARG B 68 REMARK 465 THR B 69 REMARK 465 ALA B 70 REMARK 465 LEU B 305 REMARK 465 GLU B 306 REMARK 465 LEU B 307 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O CYS B 89 O HOH B 47 2.14 REMARK 500 NH2 ARG A 195 OD1 ASN B 157 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 164 119.28 -33.49 REMARK 500 ASP A 272 40.78 -79.67 REMARK 500 ASP B 296 50.59 26.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP B 308 DBREF 3FE2 A 68 307 UNP P17844 DDX5_HUMAN 68 307 DBREF 3FE2 B 68 307 UNP P17844 DDX5_HUMAN 68 307 SEQADV 3FE2 SER A 66 UNP P17844 EXPRESSION TAG SEQADV 3FE2 MET A 67 UNP P17844 EXPRESSION TAG SEQADV 3FE2 SER B 66 UNP P17844 EXPRESSION TAG SEQADV 3FE2 MET B 67 UNP P17844 EXPRESSION TAG SEQRES 1 A 242 SER MET ARG THR ALA GLN GLU VAL GLU THR TYR ARG ARG SEQRES 2 A 242 SER LYS GLU ILE THR VAL ARG GLY HIS ASN CYS PRO LYS SEQRES 3 A 242 PRO VAL LEU ASN PHE TYR GLU ALA ASN PHE PRO ALA ASN SEQRES 4 A 242 VAL MET ASP VAL ILE ALA ARG GLN ASN PHE THR GLU PRO SEQRES 5 A 242 THR ALA ILE GLN ALA GLN GLY TRP PRO VAL ALA LEU SER SEQRES 6 A 242 GLY LEU ASP MET VAL GLY VAL ALA GLN THR GLY SER GLY SEQRES 7 A 242 LYS THR LEU SER TYR LEU LEU PRO ALA ILE VAL HIS ILE SEQRES 8 A 242 ASN HIS GLN PRO PHE LEU GLU ARG GLY ASP GLY PRO ILE SEQRES 9 A 242 CYS LEU VAL LEU ALA PRO THR ARG GLU LEU ALA GLN GLN SEQRES 10 A 242 VAL GLN GLN VAL ALA ALA GLU TYR CYS ARG ALA CYS ARG SEQRES 11 A 242 LEU LYS SER THR CYS ILE TYR GLY GLY ALA PRO LYS GLY SEQRES 12 A 242 PRO GLN ILE ARG ASP LEU GLU ARG GLY VAL GLU ILE CYS SEQRES 13 A 242 ILE ALA THR PRO GLY ARG LEU ILE ASP PHE LEU GLU CYS SEQRES 14 A 242 GLY LYS THR ASN LEU ARG ARG THR THR TYR LEU VAL LEU SEQRES 15 A 242 ASP GLU ALA ASP ARG MET LEU ASP MET GLY PHE GLU PRO SEQRES 16 A 242 GLN ILE ARG LYS ILE VAL ASP GLN ILE ARG PRO ASP ARG SEQRES 17 A 242 GLN THR LEU MET TRP SER ALA THR TRP PRO LYS GLU VAL SEQRES 18 A 242 ARG GLN LEU ALA GLU ASP PHE LEU LYS ASP TYR ILE HIS SEQRES 19 A 242 ILE ASN ILE GLY ALA LEU GLU LEU SEQRES 1 B 242 SER MET ARG THR ALA GLN GLU VAL GLU THR TYR ARG ARG SEQRES 2 B 242 SER LYS GLU ILE THR VAL ARG GLY HIS ASN CYS PRO LYS SEQRES 3 B 242 PRO VAL LEU ASN PHE TYR GLU ALA ASN PHE PRO ALA ASN SEQRES 4 B 242 VAL MET ASP VAL ILE ALA ARG GLN ASN PHE THR GLU PRO SEQRES 5 B 242 THR ALA ILE GLN ALA GLN GLY TRP PRO VAL ALA LEU SER SEQRES 6 B 242 GLY LEU ASP MET VAL GLY VAL ALA GLN THR GLY SER GLY SEQRES 7 B 242 LYS THR LEU SER TYR LEU LEU PRO ALA ILE VAL HIS ILE SEQRES 8 B 242 ASN HIS GLN PRO PHE LEU GLU ARG GLY ASP GLY PRO ILE SEQRES 9 B 242 CYS LEU VAL LEU ALA PRO THR ARG GLU LEU ALA GLN GLN SEQRES 10 B 242 VAL GLN GLN VAL ALA ALA GLU TYR CYS ARG ALA CYS ARG SEQRES 11 B 242 LEU LYS SER THR CYS ILE TYR GLY GLY ALA PRO LYS GLY SEQRES 12 B 242 PRO GLN ILE ARG ASP LEU GLU ARG GLY VAL GLU ILE CYS SEQRES 13 B 242 ILE ALA THR PRO GLY ARG LEU ILE ASP PHE LEU GLU CYS SEQRES 14 B 242 GLY LYS THR ASN LEU ARG ARG THR THR TYR LEU VAL LEU SEQRES 15 B 242 ASP GLU ALA ASP ARG MET LEU ASP MET GLY PHE GLU PRO SEQRES 16 B 242 GLN ILE ARG LYS ILE VAL ASP GLN ILE ARG PRO ASP ARG SEQRES 17 B 242 GLN THR LEU MET TRP SER ALA THR TRP PRO LYS GLU VAL SEQRES 18 B 242 ARG GLN LEU ALA GLU ASP PHE LEU LYS ASP TYR ILE HIS SEQRES 19 B 242 ILE ASN ILE GLY ALA LEU GLU LEU HET SO4 A 3 5 HET ADP A 308 27 HET CL B 1 1 HET SO4 B 2 5 HET SO4 B 4 5 HET ADP B 308 27 HETNAM SO4 SULFATE ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM CL CHLORIDE ION FORMUL 3 SO4 3(O4 S 2-) FORMUL 4 ADP 2(C10 H15 N5 O10 P2) FORMUL 5 CL CL 1- FORMUL 9 HOH *75(H2 O) HELIX 1 1 GLN A 71 GLU A 81 1 11 HELIX 2 2 PRO A 102 ARG A 111 1 10 HELIX 3 3 THR A 118 GLY A 131 1 14 HELIX 4 4 GLY A 143 HIS A 158 1 16 HELIX 5 5 THR A 176 CYS A 194 1 19 HELIX 6 6 PRO A 206 GLY A 217 1 12 HELIX 7 7 THR A 224 CYS A 234 1 11 HELIX 8 8 GLU A 249 MET A 256 1 8 HELIX 9 9 PHE A 258 ASP A 267 1 10 HELIX 10 10 PRO A 283 LEU A 294 1 12 HELIX 11 11 GLN B 71 LYS B 80 1 10 HELIX 12 12 ASN B 95 ASN B 100 1 6 HELIX 13 13 PRO B 102 GLN B 112 1 11 HELIX 14 14 THR B 118 SER B 130 1 13 HELIX 15 15 GLY B 143 HIS B 158 1 16 HELIX 16 16 THR B 176 CYS B 194 1 19 HELIX 17 17 PRO B 206 ARG B 216 1 11 HELIX 18 18 THR B 224 CYS B 234 1 11 HELIX 19 19 GLU B 249 MET B 256 1 8 HELIX 20 20 PHE B 258 GLN B 268 1 11 HELIX 21 21 PRO B 283 LEU B 294 1 12 SHEET 1 A 8 ILE A 82 ARG A 85 0 SHEET 2 A 8 ILE A 298 ILE A 302 -1 O ASN A 301 N THR A 83 SHEET 3 A 8 MET A 134 ALA A 138 1 N VAL A 135 O ILE A 300 SHEET 4 A 8 GLN A 274 SER A 279 1 O SER A 279 N GLY A 136 SHEET 5 A 8 TYR A 244 LEU A 247 1 N LEU A 245 O GLN A 274 SHEET 6 A 8 CYS A 170 LEU A 173 1 N LEU A 173 O VAL A 246 SHEET 7 A 8 ILE A 220 ALA A 223 1 O ALA A 223 N VAL A 172 SHEET 8 A 8 SER A 198 ILE A 201 1 N ILE A 201 O ILE A 222 SHEET 1 B 8 ILE B 82 ARG B 85 0 SHEET 2 B 8 ILE B 298 ILE B 302 -1 O HIS B 299 N ARG B 85 SHEET 3 B 8 MET B 134 VAL B 137 1 N VAL B 135 O ILE B 300 SHEET 4 B 8 GLN B 274 SER B 279 1 O MET B 277 N MET B 134 SHEET 5 B 8 TYR B 244 LEU B 247 1 N LEU B 245 O GLN B 274 SHEET 6 B 8 CYS B 170 LEU B 173 1 N LEU B 173 O VAL B 246 SHEET 7 B 8 ILE B 220 ALA B 223 1 O ALA B 223 N VAL B 172 SHEET 8 B 8 SER B 198 ILE B 201 1 N ILE B 201 O ILE B 222 SITE 1 AC1 4 GLY A 203 THR A 224 GLY A 226 ARG A 227 SITE 1 AC2 16 HOH A 6 HOH A 63 PHE A 96 PHE A 114 SITE 2 AC2 16 GLU A 116 THR A 118 GLN A 121 GLN A 139 SITE 3 AC2 16 THR A 140 GLY A 141 SER A 142 GLY A 143 SITE 4 AC2 16 LYS A 144 THR A 145 HOH A 309 HOH A 310 SITE 1 AC3 2 ASN B 157 CYS B 194 SITE 1 AC4 6 GLY B 203 THR B 224 PRO B 225 GLY B 226 SITE 2 AC4 6 ARG B 227 PHE B 258 SITE 1 AC5 2 HIS A 87 ARG B 212 SITE 1 AC6 16 HOH B 32 HOH B 42 PHE B 96 PHE B 114 SITE 2 AC6 16 GLU B 116 PRO B 117 THR B 118 GLN B 121 SITE 3 AC6 16 GLN B 139 THR B 140 GLY B 141 SER B 142 SITE 4 AC6 16 GLY B 143 LYS B 144 THR B 145 HOH B 309 CRYST1 84.570 106.870 117.320 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011825 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009357 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008524 0.00000