HEADER PHEROMONE BINDING PROTEIN 28-NOV-08 3FE8 TITLE CRYSTAL STRUCTURE OF A PHEROMONE BINDING PROTEIN FROM APIS MELLIFERA TITLE 2 WITH A SERENDIPITOUS LIGAND SOAKED AT PH 4.0 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHEROMONE-BINDING PROTEIN ASP1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 26-144; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: APIS MELLIFERA; SOURCE 3 ORGANISM_COMMON: HONEYBEE; SOURCE 4 ORGANISM_TAXID: 7460; SOURCE 5 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PHIL_D2 KEYWDS PHEROMONE BINDING PROTEIN, HONEY BEE, APIS MELLIFERA, SIGNAL KEYWDS 2 TRANSDUCTION, QUEEN MANDIBULAR PROTEIN, PH EXPDTA X-RAY DIFFRACTION AUTHOR M.E.PESENTI,S.SPINELLI,V.BEZIRARD,L.BRIAND,J.C.PERNOLLET,M.TEGONI, AUTHOR 2 C.CAMBILLAU REVDAT 3 01-NOV-23 3FE8 1 REMARK REVDAT 2 13-JUL-11 3FE8 1 VERSN REVDAT 1 01-DEC-09 3FE8 0 JRNL AUTH M.E.PESENTI,S.SPINELLI,V.BEZIRARD,L.BRIAND,J.C.PERNOLLET, JRNL AUTH 2 M.TEGONI,C.CAMBILLAU JRNL TITL QUEEN BEE PHEROMONE BINDING PROTEIN PH INDUCED JRNL TITL 2 DOMAIN-SWAPPING FAVORS PHEROMONE RELEASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.E.PESENTI,S.SPINELLI,V.BEZIRARD,L.BRIAND,J.C.PERNOLLET, REMARK 1 AUTH 2 M.TEGONI,C.CAMBILLAU REMARK 1 TITL STRUCTURAL BASIS OF THE HONEY BEE PBP PHEROMONE AND REMARK 1 TITL 2 PH-INDUCED CONFORMATIONAL CHANGE REMARK 1 REF J.MOL.BIOL. V. 380 158 2008 REMARK 1 REFN ISSN 0022-2836 REMARK 1 PMID 18508083 REMARK 1 DOI 10.1016/J.JMB.2008.04.048 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.4.0077 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 12133 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.500 REMARK 3 FREE R VALUE TEST SET COUNT : 987 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 858 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.1930 REMARK 3 BIN FREE R VALUE SET COUNT : 82 REMARK 3 BIN FREE R VALUE : 0.2260 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 919 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 50 REMARK 3 SOLVENT ATOMS : 157 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 21.49 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : -0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.124 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.122 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.069 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.114 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1015 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 718 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1377 ; 1.497 ; 2.013 REMARK 3 BOND ANGLES OTHERS (DEGREES): 1780 ; 2.758 ; 3.007 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 128 ;19.149 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 46 ;34.867 ;27.174 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 164 ;14.580 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 2 ; 5.414 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 152 ; 0.119 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1094 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 162 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 613 ; 0.537 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 240 ; 0.159 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1002 ; 1.025 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 402 ; 1.809 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 370 ; 2.780 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 69 REMARK 3 ORIGIN FOR THE GROUP (A): -29.1403 -12.5035 -15.4871 REMARK 3 T TENSOR REMARK 3 T11: 0.0419 T22: 0.0422 REMARK 3 T33: 0.0580 T12: 0.0090 REMARK 3 T13: 0.0082 T23: -0.0065 REMARK 3 L TENSOR REMARK 3 L11: 1.0148 L22: 0.9503 REMARK 3 L33: 1.3869 L12: -0.2726 REMARK 3 L13: -0.1014 L23: -0.2073 REMARK 3 S TENSOR REMARK 3 S11: -0.0737 S12: -0.0201 S13: -0.1262 REMARK 3 S21: 0.0383 S22: 0.0081 S23: -0.0659 REMARK 3 S31: 0.1229 S32: 0.0700 S33: 0.0656 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 70 A 88 REMARK 3 ORIGIN FOR THE GROUP (A): -24.4601 -21.6163 -2.5840 REMARK 3 T TENSOR REMARK 3 T11: 0.1451 T22: 0.0986 REMARK 3 T33: 0.0931 T12: 0.0168 REMARK 3 T13: -0.0271 T23: 0.0574 REMARK 3 L TENSOR REMARK 3 L11: 2.4450 L22: 3.7829 REMARK 3 L33: 1.5166 L12: -0.8500 REMARK 3 L13: 0.8126 L23: 1.3611 REMARK 3 S TENSOR REMARK 3 S11: -0.0756 S12: 0.0768 S13: -0.1303 REMARK 3 S21: -0.0998 S22: -0.0720 S23: 0.1719 REMARK 3 S31: -0.0383 S32: 0.1098 S33: 0.1477 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 89 A 119 REMARK 3 ORIGIN FOR THE GROUP (A): -25.4036 -8.3766 -6.5542 REMARK 3 T TENSOR REMARK 3 T11: 0.0414 T22: 0.0460 REMARK 3 T33: 0.0606 T12: -0.0087 REMARK 3 T13: -0.0460 T23: 0.0242 REMARK 3 L TENSOR REMARK 3 L11: 3.4927 L22: 3.2581 REMARK 3 L33: 3.0526 L12: -1.6852 REMARK 3 L13: -0.9520 L23: -1.1984 REMARK 3 S TENSOR REMARK 3 S11: -0.0500 S12: -0.1592 S13: -0.0763 REMARK 3 S21: 0.2622 S22: -0.1502 S23: -0.2022 REMARK 3 S31: -0.0466 S32: 0.0711 S33: 0.2003 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3FE8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-JAN-09. REMARK 100 THE DEPOSITION ID IS D_1000050480. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-NOV-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : TIROIDAL MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13139 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 46.270 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.000 REMARK 200 R MERGE (I) : 0.10100 REMARK 200 R SYM (I) : 0.10100 REMARK 200 FOR THE DATA SET : 16.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.10 REMARK 200 R MERGE FOR SHELL (I) : 0.46400 REMARK 200 R SYM FOR SHELL (I) : 0.46400 REMARK 200 FOR SHELL : 4.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC 5.4.0077 REMARK 200 STARTING MODEL: PDB ENTRY 3CYZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.7M AMMONIUM SULFATE, 0.1M SODIUM REMARK 280 CITRATE, PH4.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 23.13150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 23.13150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 41.18700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 42.33550 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 41.18700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 42.33550 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 23.13150 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 41.18700 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 42.33550 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 23.13150 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 41.18700 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 42.33550 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 125 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 126 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 181 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 239 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 271 LIES ON A SPECIAL POSITION. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CMJ A 120 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 121 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 122 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2H8V RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN THE APO FORM AT PH 5.5 REMARK 900 RELATED ID: 3BFA RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN COMPLEX WITH THE QMP AT PH 5.5 REMARK 900 RELATED ID: 3BFB RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN COMPLEX WITH THE 9-ODA AT PH 5.5 REMARK 900 RELATED ID: 3BJH RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN COMPLEX WITH THE NBBSA AT PH 5.5 REMARK 900 RELATED ID: 3BFH RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN COMPLEX WITH THE HDOA AT PH 5.5 REMARK 900 RELATED ID: 3CAB RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN COMPLEX WITH THE NBBSA SOAKED AT PH 7.0 REMARK 900 RELATED ID: 3CDN RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN THE APO FORM SOAKED AT PH 4.0 REMARK 900 RELATED ID: 3CZ2 RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN THE APO FORM AT PH 7.0 REMARK 900 RELATED ID: 3CZ0 RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN COMPLEX WITH THE QMP AT PH 7.0 REMARK 900 RELATED ID: 3CYZ RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN COMPLEX WITH THE 9-ODA AT PH 7.0 REMARK 900 RELATED ID: 3CZ1 RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN COMPLEX WITH THE NBBSA AT PH 7.0 REMARK 900 RELATED ID: 3D75 RELATED DB: PDB REMARK 900 THE MUTANT D35N OF THE SAME PROTEIN IN COMPLEX WITH HE NBBSA AT PH REMARK 900 5.5 REMARK 900 RELATED ID: 3D76 RELATED DB: PDB REMARK 900 THE MUTANT D35N OF THE SAME PROTEIN IN COMPLEX WITH HE NBBSA SOAKED REMARK 900 AT PH 7.0 REMARK 900 RELATED ID: 3D77 RELATED DB: PDB REMARK 900 THE MUTANT D35N OF THE SAME PROTEIN IN COMPLEX WITH HE NBBSA SOAKED REMARK 900 AT PH 4.0 REMARK 900 RELATED ID: 3D78 RELATED DB: PDB REMARK 900 THE MUTANT D35N OF THE SAME PROTEIN IN COMPLEX WITH HE NBBSA AT PH REMARK 900 7.0 REMARK 900 RELATED ID: 3D73 RELATED DB: PDB REMARK 900 THE MUTANT D35A OF THE SAME PROTEIN IN COMPLEX WITH HE NBBSA AT PH REMARK 900 7.0 REMARK 900 RELATED ID: 3D74 RELATED DB: PDB REMARK 900 THE MUTANT D35A OF THE SAME PROTEIN IN COMPLEX WITH HE NBBSA SOAKED REMARK 900 AT PH 5.5 REMARK 900 RELATED ID: 3FE6 RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN COMPLEX WITH A SERENDIPITOUS LIGAND AT PH 5.5 REMARK 900 RELATED ID: 3FE9 RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN COMPLEX WITH A SERENDIPITOUS LIGAND SOAKED AT REMARK 900 PH 7.0 DBREF 3FE8 A 1 119 UNP Q9U9J6 Q9U9J6_APIME 26 144 SEQRES 1 A 119 ALA PRO ASP TRP VAL PRO PRO GLU VAL PHE ASP LEU VAL SEQRES 2 A 119 ALA GLU ASP LYS ALA ARG CYS MET SER GLU HIS GLY THR SEQRES 3 A 119 THR GLN ALA GLN ILE ASP ASP VAL ASP LYS GLY ASN LEU SEQRES 4 A 119 VAL ASN GLU PRO SER ILE THR CYS TYR MET TYR CYS LEU SEQRES 5 A 119 LEU GLU ALA PHE SER LEU VAL ASP ASP GLU ALA ASN VAL SEQRES 6 A 119 ASP GLU ASP ILE MET LEU GLY LEU LEU PRO ASP GLN LEU SEQRES 7 A 119 GLN GLU ARG ALA GLN SER VAL MET GLY LYS CYS LEU PRO SEQRES 8 A 119 THR SER GLY SER ASP ASN CYS ASN LYS ILE TYR ASN LEU SEQRES 9 A 119 ALA LYS CYS VAL GLN GLU SER ALA PRO ASP VAL TRP PHE SEQRES 10 A 119 VAL ILE HET CMJ A 120 43 HET GOL A 121 6 HET CL A 122 1 HETNAM CMJ (20S)-20-METHYLDOTETRACONTANE HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 CMJ C43 H88 FORMUL 3 GOL C3 H8 O3 FORMUL 4 CL CL 1- FORMUL 5 HOH *157(H2 O) HELIX 1 1 GLU A 8 GLY A 25 1 18 HELIX 2 2 THR A 27 LYS A 36 1 10 HELIX 3 3 GLU A 42 PHE A 56 1 15 HELIX 4 4 ASP A 66 LEU A 74 1 9 HELIX 5 5 PRO A 75 GLN A 77 5 3 HELIX 6 6 LEU A 78 LEU A 90 1 13 HELIX 7 7 ASP A 96 ALA A 112 1 17 SSBOND 1 CYS A 20 CYS A 51 1555 1555 2.01 SSBOND 2 CYS A 47 CYS A 98 1555 1555 2.07 SSBOND 3 CYS A 89 CYS A 107 1555 1555 2.07 CISPEP 1 LEU A 90 PRO A 91 0 3.59 SITE 1 AC1 9 VAL A 9 LEU A 53 PHE A 56 MET A 70 SITE 2 AC1 9 LEU A 73 MET A 86 VAL A 115 PHE A 117 SITE 3 AC1 9 GOL A 121 SITE 1 AC2 4 GLY A 72 CMJ A 120 HOH A 264 HOH A 274 SITE 1 AC3 4 ASN A 64 VAL A 65 PRO A 91 THR A 92 CRYST1 82.374 84.671 46.263 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012140 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011810 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021616 0.00000