data_3FEL # _entry.id 3FEL # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3FEL RCSB RCSB050493 WWPDB D_1000050493 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2fs6 'apo-wild-type CRABPII' unspecified PDB 2fs7 'apo-wild-type CRABPII' unspecified PDB 3FA9 'another CRABPII mutant' unspecified PDB 3FA8 'another CRABPII mutant' unspecified PDB 3FA7 'another CRABPII mutant' unspecified PDB 3FEK 'CRABPII R132K:Y134F:R111L:L121D:T54V mutant' unspecified PDB 3FEN 'CRABPII R132K:R111L:A32E mutant' unspecified PDB 3FEP 'R132K:R111L:L121E:R59W-CRABPII mutant' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3FEL _pdbx_database_status.recvd_initial_deposition_date 2008-11-30 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Jia, X.' 1 'Geiger, J.H.' 2 # _citation.id primary _citation.title ;Crystal structures of apo cellular retinoic acid-binding protein II mutants: Structural integrity investigated through multiple site mutations ; _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Jia, X.' 1 primary 'Lee, K.S.' 2 primary 'Vasileiou, C.' 3 primary 'Borhan, B.' 4 primary 'Geiger, J.H.' 5 # _cell.entry_id 3FEL _cell.length_a 34.803 _cell.length_b 36.678 _cell.length_c 56.892 _cell.angle_alpha 75.52 _cell.angle_beta 74.88 _cell.angle_gamma 88.40 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3FEL _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Cellular retinoic acid-binding protein 2' 15537.763 2 ? 'R132K, R111L, T54E' ? ? 2 non-polymer syn '2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL' 282.334 3 ? ? ? ? 3 water nat water 18.015 154 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Cellular retinoic acid-binding protein II, CRABP-II' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;PNFSGNWKIIRSENFEELLKVLGVNVMLRKIAVAAASKPAVEIKQEGDTFYIKESTTVRTTEINFKVGEEFEEQTVDGRP CKSLVKWESENKMVCEQKLLKGEGPKTSWTLELTNDGELILTMTADDVVCTKVYVRE ; _entity_poly.pdbx_seq_one_letter_code_can ;PNFSGNWKIIRSENFEELLKVLGVNVMLRKIAVAAASKPAVEIKQEGDTFYIKESTTVRTTEINFKVGEEFEEQTVDGRP CKSLVKWESENKMVCEQKLLKGEGPKTSWTLELTNDGELILTMTADDVVCTKVYVRE ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PRO n 1 2 ASN n 1 3 PHE n 1 4 SER n 1 5 GLY n 1 6 ASN n 1 7 TRP n 1 8 LYS n 1 9 ILE n 1 10 ILE n 1 11 ARG n 1 12 SER n 1 13 GLU n 1 14 ASN n 1 15 PHE n 1 16 GLU n 1 17 GLU n 1 18 LEU n 1 19 LEU n 1 20 LYS n 1 21 VAL n 1 22 LEU n 1 23 GLY n 1 24 VAL n 1 25 ASN n 1 26 VAL n 1 27 MET n 1 28 LEU n 1 29 ARG n 1 30 LYS n 1 31 ILE n 1 32 ALA n 1 33 VAL n 1 34 ALA n 1 35 ALA n 1 36 ALA n 1 37 SER n 1 38 LYS n 1 39 PRO n 1 40 ALA n 1 41 VAL n 1 42 GLU n 1 43 ILE n 1 44 LYS n 1 45 GLN n 1 46 GLU n 1 47 GLY n 1 48 ASP n 1 49 THR n 1 50 PHE n 1 51 TYR n 1 52 ILE n 1 53 LYS n 1 54 GLU n 1 55 SER n 1 56 THR n 1 57 THR n 1 58 VAL n 1 59 ARG n 1 60 THR n 1 61 THR n 1 62 GLU n 1 63 ILE n 1 64 ASN n 1 65 PHE n 1 66 LYS n 1 67 VAL n 1 68 GLY n 1 69 GLU n 1 70 GLU n 1 71 PHE n 1 72 GLU n 1 73 GLU n 1 74 GLN n 1 75 THR n 1 76 VAL n 1 77 ASP n 1 78 GLY n 1 79 ARG n 1 80 PRO n 1 81 CYS n 1 82 LYS n 1 83 SER n 1 84 LEU n 1 85 VAL n 1 86 LYS n 1 87 TRP n 1 88 GLU n 1 89 SER n 1 90 GLU n 1 91 ASN n 1 92 LYS n 1 93 MET n 1 94 VAL n 1 95 CYS n 1 96 GLU n 1 97 GLN n 1 98 LYS n 1 99 LEU n 1 100 LEU n 1 101 LYS n 1 102 GLY n 1 103 GLU n 1 104 GLY n 1 105 PRO n 1 106 LYS n 1 107 THR n 1 108 SER n 1 109 TRP n 1 110 THR n 1 111 LEU n 1 112 GLU n 1 113 LEU n 1 114 THR n 1 115 ASN n 1 116 ASP n 1 117 GLY n 1 118 GLU n 1 119 LEU n 1 120 ILE n 1 121 LEU n 1 122 THR n 1 123 MET n 1 124 THR n 1 125 ALA n 1 126 ASP n 1 127 ASP n 1 128 VAL n 1 129 VAL n 1 130 CYS n 1 131 THR n 1 132 LYS n 1 133 VAL n 1 134 TYR n 1 135 VAL n 1 136 ARG n 1 137 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene CRABP2 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)pLysS' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name CRABPII-pET17b-KL-T54E _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code RABP2_HUMAN _struct_ref.pdbx_db_accession P29373 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;PNFSGNWKIIRSENFEELLKVLGVNVMLRKIAVAAASKPAVEIKQEGDTFYIKTSTTVRTTEINFKVGEEFEEQTVDGRP CKSLVKWESENKMVCEQKLLKGEGPKTSWTRELTNDGELILTMTADDVVCTRVYVRE ; _struct_ref.pdbx_align_begin 2 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3FEL A 1 ? 137 ? P29373 2 ? 138 ? 1 137 2 1 3FEL B 1 ? 137 ? P29373 2 ? 138 ? 1 137 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3FEL GLU A 54 ? UNP P29373 THR 55 ENGINEERED 54 1 1 3FEL LEU A 111 ? UNP P29373 ARG 112 ENGINEERED 111 2 1 3FEL LYS A 132 ? UNP P29373 ARG 133 ENGINEERED 132 3 2 3FEL GLU B 54 ? UNP P29373 THR 55 ENGINEERED 54 4 2 3FEL LEU B 111 ? UNP P29373 ARG 112 ENGINEERED 111 5 2 3FEL LYS B 132 ? UNP P29373 ARG 133 ENGINEERED 132 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 B3P non-polymer . '2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL' ? 'C11 H26 N2 O6' 282.334 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3FEL _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.18 _exptl_crystal.density_percent_sol 43.65 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details '0.1M BTP, 30% PEG4000, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 300 mm CCD' _diffrn_detector.pdbx_collection_date 2007-12-13 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'C(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97850 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 21-ID-G' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 21-ID-G _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97850 # _reflns.entry_id 3FEL _reflns.observed_criterion_sigma_I 1 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 53.2 _reflns.d_resolution_high 1.85 _reflns.number_obs 18943 _reflns.number_all ? _reflns.percent_possible_obs 84.5 _reflns.pdbx_Rmerge_I_obs 0.051 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 26.6 _reflns.B_iso_Wilson_estimate 38.2 _reflns.pdbx_redundancy 2.4 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.85 _reflns_shell.d_res_low 1.92 _reflns_shell.percent_possible_all 43.3 _reflns_shell.Rmerge_I_obs 0.297 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.4 _reflns_shell.pdbx_redundancy 1.7 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 959 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3FEL _refine.ls_number_reflns_obs 17972 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 35.49 _refine.ls_d_res_high 1.85 _refine.ls_percent_reflns_obs 84.57 _refine.ls_R_factor_obs 0.19278 _refine.ls_R_factor_all 0.19278 _refine.ls_R_factor_R_work 0.18974 _refine.ls_R_factor_R_free 0.24847 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 969 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.965 _refine.correlation_coeff_Fo_to_Fc_free 0.936 _refine.B_iso_mean 24.122 _refine.aniso_B[1][1] -1.46 _refine.aniso_B[2][2] -2.63 _refine.aniso_B[3][3] 3.09 _refine.aniso_B[1][2] -0.21 _refine.aniso_B[1][3] 0.80 _refine.aniso_B[2][3] 1.19 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 'PDB entry 2G7B' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.206 _refine.pdbx_overall_ESU_R_Free 0.183 _refine.overall_SU_ML 0.126 _refine.overall_SU_B 8.503 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2154 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 48 _refine_hist.number_atoms_solvent 154 _refine_hist.number_atoms_total 2356 _refine_hist.d_res_high 1.85 _refine_hist.d_res_low 35.49 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.008 0.022 ? 2327 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.238 1.984 ? 3166 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.493 5.000 ? 298 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 31.172 25.510 ? 98 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 14.219 15.000 ? 441 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 9.863 15.000 ? 12 'X-RAY DIFFRACTION' ? r_chiral_restr 0.081 0.200 ? 375 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.004 0.020 ? 1670 'X-RAY DIFFRACTION' ? r_nbd_refined 0.229 0.300 ? 986 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.325 0.500 ? 1597 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.234 0.500 ? 268 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.242 0.300 ? 77 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.261 0.500 ? 26 'X-RAY DIFFRACTION' ? r_mcbond_it 0.899 2.000 ? 1464 'X-RAY DIFFRACTION' ? r_mcangle_it 1.380 3.000 ? 2319 'X-RAY DIFFRACTION' ? r_scbond_it 0.792 2.000 ? 980 'X-RAY DIFFRACTION' ? r_scangle_it 1.060 3.000 ? 834 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.85 _refine_ls_shell.d_res_low 1.898 _refine_ls_shell.number_reflns_R_work 635 _refine_ls_shell.R_factor_R_work 0.259 _refine_ls_shell.percent_reflns_obs 40.71 _refine_ls_shell.R_factor_R_free 0.305 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 29 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 635 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3FEL _struct.title 'Crystal structure of the R132K:R111L:T54E mutant of cellular retinoic acid-binding protein II at 1.85 angstrom resolution' _struct.pdbx_descriptor 'Cellular retinoic acid-binding protein 2' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3FEL _struct_keywords.pdbx_keywords 'TRANSPORT PROTEIN' _struct_keywords.text 'CRABPII, retinoic acid, retinoid, Nucleus, Retinol-binding, Transport, Vitamin A, TRANSPORT PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 3 ? G N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 14 ? LEU A 22 ? ASN A 14 LEU A 22 1 ? 9 HELX_P HELX_P2 2 ASN A 25 ? ALA A 36 ? ASN A 25 ALA A 36 1 ? 12 HELX_P HELX_P3 3 ASN B 14 ? LEU B 22 ? ASN B 14 LEU B 22 1 ? 9 HELX_P HELX_P4 4 ASN B 25 ? ALA B 36 ? ASN B 25 ALA B 36 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 10 ? B ? 10 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel A 7 8 ? anti-parallel A 8 9 ? anti-parallel A 9 10 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel B 6 7 ? anti-parallel B 7 8 ? anti-parallel B 8 9 ? anti-parallel B 9 10 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 60 ? LYS A 66 ? THR A 60 LYS A 66 A 2 THR A 49 ? SER A 55 ? THR A 49 SER A 55 A 3 ALA A 40 ? GLU A 46 ? ALA A 40 GLU A 46 A 4 GLY A 5 ? GLU A 13 ? GLY A 5 GLU A 13 A 5 VAL A 128 ? ARG A 136 ? VAL A 128 ARG A 136 A 6 GLU A 118 ? ALA A 125 ? GLU A 118 ALA A 125 A 7 THR A 107 ? LEU A 113 ? THR A 107 LEU A 113 A 8 LYS A 92 ? LEU A 99 ? LYS A 92 LEU A 99 A 9 PRO A 80 ? SER A 89 ? PRO A 80 SER A 89 A 10 PHE A 71 ? GLN A 74 ? PHE A 71 GLN A 74 B 1 THR B 60 ? LYS B 66 ? THR B 60 LYS B 66 B 2 THR B 49 ? SER B 55 ? THR B 49 SER B 55 B 3 ALA B 40 ? GLU B 46 ? ALA B 40 GLU B 46 B 4 GLY B 5 ? GLU B 13 ? GLY B 5 GLU B 13 B 5 VAL B 128 ? ARG B 136 ? VAL B 128 ARG B 136 B 6 GLU B 118 ? ALA B 125 ? GLU B 118 ALA B 125 B 7 THR B 107 ? LEU B 113 ? THR B 107 LEU B 113 B 8 LYS B 92 ? LEU B 99 ? LYS B 92 LEU B 99 B 9 PRO B 80 ? SER B 89 ? PRO B 80 SER B 89 B 10 PHE B 71 ? GLN B 74 ? PHE B 71 GLN B 74 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O PHE A 65 ? O PHE A 65 N PHE A 50 ? N PHE A 50 A 2 3 O LYS A 53 ? O LYS A 53 N GLU A 42 ? N GLU A 42 A 3 4 O VAL A 41 ? O VAL A 41 N TRP A 7 ? N TRP A 7 A 4 5 N ILE A 10 ? N ILE A 10 O VAL A 133 ? O VAL A 133 A 5 6 O TYR A 134 ? O TYR A 134 N LEU A 119 ? N LEU A 119 A 6 7 O ILE A 120 ? O ILE A 120 N GLU A 112 ? N GLU A 112 A 7 8 O TRP A 109 ? O TRP A 109 N CYS A 95 ? N CYS A 95 A 8 9 O LYS A 98 ? O LYS A 98 N LYS A 82 ? N LYS A 82 A 9 10 O SER A 83 ? O SER A 83 N PHE A 71 ? N PHE A 71 B 1 2 O PHE B 65 ? O PHE B 65 N PHE B 50 ? N PHE B 50 B 2 3 O LYS B 53 ? O LYS B 53 N GLU B 42 ? N GLU B 42 B 3 4 O VAL B 41 ? O VAL B 41 N TRP B 7 ? N TRP B 7 B 4 5 N ILE B 10 ? N ILE B 10 O VAL B 133 ? O VAL B 133 B 5 6 O CYS B 130 ? O CYS B 130 N MET B 123 ? N MET B 123 B 6 7 O ILE B 120 ? O ILE B 120 N GLU B 112 ? N GLU B 112 B 7 8 O TRP B 109 ? O TRP B 109 N CYS B 95 ? N CYS B 95 B 8 9 O LYS B 98 ? O LYS B 98 N LYS B 82 ? N LYS B 82 B 9 10 O SER B 83 ? O SER B 83 N PHE B 71 ? N PHE B 71 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 10 'BINDING SITE FOR RESIDUE B3P A 138' AC2 Software ? ? ? ? 9 'BINDING SITE FOR RESIDUE B3P A 139' AC3 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE B3P B 138' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 10 ILE A 52 ? ILE A 52 . ? 1_555 ? 2 AC1 10 GLU A 54 ? GLU A 54 . ? 1_555 ? 3 AC1 10 THR A 61 ? THR A 61 . ? 1_555 ? 4 AC1 10 ILE A 63 ? ILE A 63 . ? 1_555 ? 5 AC1 10 GLU A 73 ? GLU A 73 . ? 1_555 ? 6 AC1 10 GLN A 74 ? GLN A 74 . ? 1_555 ? 7 AC1 10 GLN A 97 ? GLN A 97 . ? 1_555 ? 8 AC1 10 MET A 123 ? MET A 123 . ? 1_555 ? 9 AC1 10 HOH F . ? HOH A 150 . ? 1_555 ? 10 AC1 10 HOH F . ? HOH A 165 . ? 1_555 ? 11 AC2 9 THR A 61 ? THR A 61 . ? 1_555 ? 12 AC2 9 GLU A 62 ? GLU A 62 . ? 1_555 ? 13 AC2 9 GLU A 72 ? GLU A 72 . ? 1_555 ? 14 AC2 9 GLU A 73 ? GLU A 73 . ? 1_555 ? 15 AC2 9 GLN A 74 ? GLN A 74 . ? 1_555 ? 16 AC2 9 HOH F . ? HOH A 165 . ? 1_555 ? 17 AC2 9 HOH F . ? HOH A 174 . ? 1_555 ? 18 AC2 9 HOH F . ? HOH A 210 . ? 1_555 ? 19 AC2 9 GLU B 88 ? GLU B 88 . ? 1_554 ? 20 AC3 5 GLU B 54 ? GLU B 54 . ? 1_555 ? 21 AC3 5 ILE B 63 ? ILE B 63 . ? 1_555 ? 22 AC3 5 THR B 75 ? THR B 75 . ? 1_555 ? 23 AC3 5 LEU B 121 ? LEU B 121 . ? 1_555 ? 24 AC3 5 HOH G . ? HOH B 176 . ? 1_555 ? # _database_PDB_matrix.entry_id 3FEL _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3FEL _atom_sites.fract_transf_matrix[1][1] 0.028733 _atom_sites.fract_transf_matrix[1][2] -0.000802 _atom_sites.fract_transf_matrix[1][3] -0.007813 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.027275 _atom_sites.fract_transf_matrix[2][3] -0.007092 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.018813 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PRO 1 1 1 PRO PRO A . n A 1 2 ASN 2 2 2 ASN ASN A . n A 1 3 PHE 3 3 3 PHE PHE A . n A 1 4 SER 4 4 4 SER SER A . n A 1 5 GLY 5 5 5 GLY GLY A . n A 1 6 ASN 6 6 6 ASN ASN A . n A 1 7 TRP 7 7 7 TRP TRP A . n A 1 8 LYS 8 8 8 LYS LYS A . n A 1 9 ILE 9 9 9 ILE ILE A . n A 1 10 ILE 10 10 10 ILE ILE A . n A 1 11 ARG 11 11 11 ARG ARG A . n A 1 12 SER 12 12 12 SER SER A . n A 1 13 GLU 13 13 13 GLU GLU A . n A 1 14 ASN 14 14 14 ASN ASN A . n A 1 15 PHE 15 15 15 PHE PHE A . n A 1 16 GLU 16 16 16 GLU GLU A . n A 1 17 GLU 17 17 17 GLU GLU A . n A 1 18 LEU 18 18 18 LEU LEU A . n A 1 19 LEU 19 19 19 LEU LEU A . n A 1 20 LYS 20 20 20 LYS LYS A . n A 1 21 VAL 21 21 21 VAL VAL A . n A 1 22 LEU 22 22 22 LEU LEU A . n A 1 23 GLY 23 23 23 GLY GLY A . n A 1 24 VAL 24 24 24 VAL VAL A . n A 1 25 ASN 25 25 25 ASN ASN A . n A 1 26 VAL 26 26 26 VAL VAL A . n A 1 27 MET 27 27 27 MET MET A . n A 1 28 LEU 28 28 28 LEU LEU A . n A 1 29 ARG 29 29 29 ARG ARG A . n A 1 30 LYS 30 30 30 LYS LYS A . n A 1 31 ILE 31 31 31 ILE ILE A . n A 1 32 ALA 32 32 32 ALA ALA A . n A 1 33 VAL 33 33 33 VAL VAL A . n A 1 34 ALA 34 34 34 ALA ALA A . n A 1 35 ALA 35 35 35 ALA ALA A . n A 1 36 ALA 36 36 36 ALA ALA A . n A 1 37 SER 37 37 37 SER SER A . n A 1 38 LYS 38 38 38 LYS LYS A . n A 1 39 PRO 39 39 39 PRO PRO A . n A 1 40 ALA 40 40 40 ALA ALA A . n A 1 41 VAL 41 41 41 VAL VAL A . n A 1 42 GLU 42 42 42 GLU GLU A . n A 1 43 ILE 43 43 43 ILE ILE A . n A 1 44 LYS 44 44 44 LYS LYS A . n A 1 45 GLN 45 45 45 GLN GLN A . n A 1 46 GLU 46 46 46 GLU GLU A . n A 1 47 GLY 47 47 47 GLY GLY A . n A 1 48 ASP 48 48 48 ASP ASP A . n A 1 49 THR 49 49 49 THR THR A . n A 1 50 PHE 50 50 50 PHE PHE A . n A 1 51 TYR 51 51 51 TYR TYR A . n A 1 52 ILE 52 52 52 ILE ILE A . n A 1 53 LYS 53 53 53 LYS LYS A . n A 1 54 GLU 54 54 54 GLU GLU A . n A 1 55 SER 55 55 55 SER SER A . n A 1 56 THR 56 56 56 THR THR A . n A 1 57 THR 57 57 57 THR THR A . n A 1 58 VAL 58 58 58 VAL VAL A . n A 1 59 ARG 59 59 59 ARG ARG A . n A 1 60 THR 60 60 60 THR THR A . n A 1 61 THR 61 61 61 THR THR A . n A 1 62 GLU 62 62 62 GLU GLU A . n A 1 63 ILE 63 63 63 ILE ILE A . n A 1 64 ASN 64 64 64 ASN ASN A . n A 1 65 PHE 65 65 65 PHE PHE A . n A 1 66 LYS 66 66 66 LYS LYS A . n A 1 67 VAL 67 67 67 VAL VAL A . n A 1 68 GLY 68 68 68 GLY GLY A . n A 1 69 GLU 69 69 69 GLU GLU A . n A 1 70 GLU 70 70 70 GLU GLU A . n A 1 71 PHE 71 71 71 PHE PHE A . n A 1 72 GLU 72 72 72 GLU GLU A . n A 1 73 GLU 73 73 73 GLU GLU A . n A 1 74 GLN 74 74 74 GLN GLN A . n A 1 75 THR 75 75 75 THR THR A . n A 1 76 VAL 76 76 76 VAL VAL A . n A 1 77 ASP 77 77 77 ASP ASP A . n A 1 78 GLY 78 78 78 GLY GLY A . n A 1 79 ARG 79 79 79 ARG ARG A . n A 1 80 PRO 80 80 80 PRO PRO A . n A 1 81 CYS 81 81 81 CYS CYS A . n A 1 82 LYS 82 82 82 LYS LYS A . n A 1 83 SER 83 83 83 SER SER A . n A 1 84 LEU 84 84 84 LEU LEU A . n A 1 85 VAL 85 85 85 VAL VAL A . n A 1 86 LYS 86 86 86 LYS LYS A . n A 1 87 TRP 87 87 87 TRP TRP A . n A 1 88 GLU 88 88 88 GLU GLU A . n A 1 89 SER 89 89 89 SER SER A . n A 1 90 GLU 90 90 90 GLU GLU A . n A 1 91 ASN 91 91 91 ASN ASN A . n A 1 92 LYS 92 92 92 LYS LYS A . n A 1 93 MET 93 93 93 MET MET A . n A 1 94 VAL 94 94 94 VAL VAL A . n A 1 95 CYS 95 95 95 CYS CYS A . n A 1 96 GLU 96 96 96 GLU GLU A . n A 1 97 GLN 97 97 97 GLN GLN A . n A 1 98 LYS 98 98 98 LYS LYS A . n A 1 99 LEU 99 99 99 LEU LEU A . n A 1 100 LEU 100 100 100 LEU LEU A . n A 1 101 LYS 101 101 101 LYS LYS A . n A 1 102 GLY 102 102 102 GLY GLY A . n A 1 103 GLU 103 103 103 GLU GLU A . n A 1 104 GLY 104 104 104 GLY GLY A . n A 1 105 PRO 105 105 105 PRO PRO A . n A 1 106 LYS 106 106 106 LYS LYS A . n A 1 107 THR 107 107 107 THR THR A . n A 1 108 SER 108 108 108 SER SER A . n A 1 109 TRP 109 109 109 TRP TRP A . n A 1 110 THR 110 110 110 THR THR A . n A 1 111 LEU 111 111 111 LEU LEU A . n A 1 112 GLU 112 112 112 GLU GLU A . n A 1 113 LEU 113 113 113 LEU LEU A . n A 1 114 THR 114 114 114 THR THR A . n A 1 115 ASN 115 115 115 ASN ASN A . n A 1 116 ASP 116 116 116 ASP ASP A . n A 1 117 GLY 117 117 117 GLY GLY A . n A 1 118 GLU 118 118 118 GLU GLU A . n A 1 119 LEU 119 119 119 LEU LEU A . n A 1 120 ILE 120 120 120 ILE ILE A . n A 1 121 LEU 121 121 121 LEU LEU A . n A 1 122 THR 122 122 122 THR THR A . n A 1 123 MET 123 123 123 MET MET A . n A 1 124 THR 124 124 124 THR THR A . n A 1 125 ALA 125 125 125 ALA ALA A . n A 1 126 ASP 126 126 126 ASP ASP A . n A 1 127 ASP 127 127 127 ASP ASP A . n A 1 128 VAL 128 128 128 VAL VAL A . n A 1 129 VAL 129 129 129 VAL VAL A . n A 1 130 CYS 130 130 130 CYS CYS A . n A 1 131 THR 131 131 131 THR THR A . n A 1 132 LYS 132 132 132 LYS LYS A . n A 1 133 VAL 133 133 133 VAL VAL A . n A 1 134 TYR 134 134 134 TYR TYR A . n A 1 135 VAL 135 135 135 VAL VAL A . n A 1 136 ARG 136 136 136 ARG ARG A . n A 1 137 GLU 137 137 137 GLU GLU A . n B 1 1 PRO 1 1 1 PRO PRO B . n B 1 2 ASN 2 2 2 ASN ASN B . n B 1 3 PHE 3 3 3 PHE PHE B . n B 1 4 SER 4 4 4 SER SER B . n B 1 5 GLY 5 5 5 GLY GLY B . n B 1 6 ASN 6 6 6 ASN ASN B . n B 1 7 TRP 7 7 7 TRP TRP B . n B 1 8 LYS 8 8 8 LYS LYS B . n B 1 9 ILE 9 9 9 ILE ILE B . n B 1 10 ILE 10 10 10 ILE ILE B . n B 1 11 ARG 11 11 11 ARG ARG B . n B 1 12 SER 12 12 12 SER SER B . n B 1 13 GLU 13 13 13 GLU GLU B . n B 1 14 ASN 14 14 14 ASN ASN B . n B 1 15 PHE 15 15 15 PHE PHE B . n B 1 16 GLU 16 16 16 GLU GLU B . n B 1 17 GLU 17 17 17 GLU GLU B . n B 1 18 LEU 18 18 18 LEU LEU B . n B 1 19 LEU 19 19 19 LEU LEU B . n B 1 20 LYS 20 20 20 LYS LYS B . n B 1 21 VAL 21 21 21 VAL VAL B . n B 1 22 LEU 22 22 22 LEU LEU B . n B 1 23 GLY 23 23 23 GLY GLY B . n B 1 24 VAL 24 24 24 VAL VAL B . n B 1 25 ASN 25 25 25 ASN ASN B . n B 1 26 VAL 26 26 26 VAL VAL B . n B 1 27 MET 27 27 27 MET MET B . n B 1 28 LEU 28 28 28 LEU LEU B . n B 1 29 ARG 29 29 29 ARG ARG B . n B 1 30 LYS 30 30 30 LYS LYS B . n B 1 31 ILE 31 31 31 ILE ILE B . n B 1 32 ALA 32 32 32 ALA ALA B . n B 1 33 VAL 33 33 33 VAL VAL B . n B 1 34 ALA 34 34 34 ALA ALA B . n B 1 35 ALA 35 35 35 ALA ALA B . n B 1 36 ALA 36 36 36 ALA ALA B . n B 1 37 SER 37 37 37 SER SER B . n B 1 38 LYS 38 38 38 LYS LYS B . n B 1 39 PRO 39 39 39 PRO PRO B . n B 1 40 ALA 40 40 40 ALA ALA B . n B 1 41 VAL 41 41 41 VAL VAL B . n B 1 42 GLU 42 42 42 GLU GLU B . n B 1 43 ILE 43 43 43 ILE ILE B . n B 1 44 LYS 44 44 44 LYS ALA B . n B 1 45 GLN 45 45 45 GLN GLN B . n B 1 46 GLU 46 46 46 GLU GLU B . n B 1 47 GLY 47 47 47 GLY GLY B . n B 1 48 ASP 48 48 48 ASP ASP B . n B 1 49 THR 49 49 49 THR THR B . n B 1 50 PHE 50 50 50 PHE PHE B . n B 1 51 TYR 51 51 51 TYR TYR B . n B 1 52 ILE 52 52 52 ILE ILE B . n B 1 53 LYS 53 53 53 LYS LYS B . n B 1 54 GLU 54 54 54 GLU GLU B . n B 1 55 SER 55 55 55 SER SER B . n B 1 56 THR 56 56 56 THR THR B . n B 1 57 THR 57 57 57 THR THR B . n B 1 58 VAL 58 58 58 VAL VAL B . n B 1 59 ARG 59 59 59 ARG ARG B . n B 1 60 THR 60 60 60 THR THR B . n B 1 61 THR 61 61 61 THR THR B . n B 1 62 GLU 62 62 62 GLU ALA B . n B 1 63 ILE 63 63 63 ILE ILE B . n B 1 64 ASN 64 64 64 ASN ASN B . n B 1 65 PHE 65 65 65 PHE PHE B . n B 1 66 LYS 66 66 66 LYS LYS B . n B 1 67 VAL 67 67 67 VAL VAL B . n B 1 68 GLY 68 68 68 GLY GLY B . n B 1 69 GLU 69 69 69 GLU GLU B . n B 1 70 GLU 70 70 70 GLU GLU B . n B 1 71 PHE 71 71 71 PHE PHE B . n B 1 72 GLU 72 72 72 GLU GLU B . n B 1 73 GLU 73 73 73 GLU GLU B . n B 1 74 GLN 74 74 74 GLN GLN B . n B 1 75 THR 75 75 75 THR THR B . n B 1 76 VAL 76 76 76 VAL VAL B . n B 1 77 ASP 77 77 77 ASP ASP B . n B 1 78 GLY 78 78 78 GLY GLY B . n B 1 79 ARG 79 79 79 ARG ARG B . n B 1 80 PRO 80 80 80 PRO PRO B . n B 1 81 CYS 81 81 81 CYS CYS B . n B 1 82 LYS 82 82 82 LYS LYS B . n B 1 83 SER 83 83 83 SER SER B . n B 1 84 LEU 84 84 84 LEU LEU B . n B 1 85 VAL 85 85 85 VAL VAL B . n B 1 86 LYS 86 86 86 LYS LYS B . n B 1 87 TRP 87 87 87 TRP TRP B . n B 1 88 GLU 88 88 88 GLU GLU B . n B 1 89 SER 89 89 89 SER SER B . n B 1 90 GLU 90 90 90 GLU GLU B . n B 1 91 ASN 91 91 91 ASN ASN B . n B 1 92 LYS 92 92 92 LYS LYS B . n B 1 93 MET 93 93 93 MET MET B . n B 1 94 VAL 94 94 94 VAL VAL B . n B 1 95 CYS 95 95 95 CYS CYS B . n B 1 96 GLU 96 96 96 GLU GLU B . n B 1 97 GLN 97 97 97 GLN GLN B . n B 1 98 LYS 98 98 98 LYS LYS B . n B 1 99 LEU 99 99 99 LEU LEU B . n B 1 100 LEU 100 100 100 LEU LEU B . n B 1 101 LYS 101 101 101 LYS ALA B . n B 1 102 GLY 102 102 102 GLY GLY B . n B 1 103 GLU 103 103 103 GLU GLU B . n B 1 104 GLY 104 104 104 GLY GLY B . n B 1 105 PRO 105 105 105 PRO PRO B . n B 1 106 LYS 106 106 106 LYS ALA B . n B 1 107 THR 107 107 107 THR THR B . n B 1 108 SER 108 108 108 SER SER B . n B 1 109 TRP 109 109 109 TRP TRP B . n B 1 110 THR 110 110 110 THR THR B . n B 1 111 LEU 111 111 111 LEU LEU B . n B 1 112 GLU 112 112 112 GLU GLU B . n B 1 113 LEU 113 113 113 LEU LEU B . n B 1 114 THR 114 114 114 THR THR B . n B 1 115 ASN 115 115 115 ASN ALA B . n B 1 116 ASP 116 116 116 ASP ASP B . n B 1 117 GLY 117 117 117 GLY GLY B . n B 1 118 GLU 118 118 118 GLU GLU B . n B 1 119 LEU 119 119 119 LEU LEU B . n B 1 120 ILE 120 120 120 ILE ILE B . n B 1 121 LEU 121 121 121 LEU LEU B . n B 1 122 THR 122 122 122 THR THR B . n B 1 123 MET 123 123 123 MET MET B . n B 1 124 THR 124 124 124 THR THR B . n B 1 125 ALA 125 125 125 ALA ALA B . n B 1 126 ASP 126 126 126 ASP ASP B . n B 1 127 ASP 127 127 127 ASP ALA B . n B 1 128 VAL 128 128 128 VAL VAL B . n B 1 129 VAL 129 129 129 VAL VAL B . n B 1 130 CYS 130 130 130 CYS CYS B . n B 1 131 THR 131 131 131 THR THR B . n B 1 132 LYS 132 132 132 LYS LYS B . n B 1 133 VAL 133 133 133 VAL VAL B . n B 1 134 TYR 134 134 134 TYR TYR B . n B 1 135 VAL 135 135 135 VAL VAL B . n B 1 136 ARG 136 136 136 ARG ARG B . n B 1 137 GLU 137 137 137 GLU GLU B . n # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA monomeric 1 2 author_and_software_defined_assembly PISA monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,D,F 2 1 B,E,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-11-10 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2016-12-28 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Structure summary' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 MOLREP phasing . ? 2 REFMAC refinement 5.2.0005 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 73 ? ? -151.72 -150.33 2 1 ASP A 126 ? ? 61.49 -107.09 3 1 GLU B 73 ? ? -148.44 -153.03 4 1 ASP B 126 ? ? 25.95 70.47 5 1 ASP B 127 ? ? 73.29 -1.49 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 B LYS 44 ? CG ? B LYS 44 CG 2 1 Y 1 B LYS 44 ? CD ? B LYS 44 CD 3 1 Y 1 B LYS 44 ? CE ? B LYS 44 CE 4 1 Y 1 B LYS 44 ? NZ ? B LYS 44 NZ 5 1 Y 1 B GLU 62 ? CG ? B GLU 62 CG 6 1 Y 1 B GLU 62 ? CD ? B GLU 62 CD 7 1 Y 1 B GLU 62 ? OE1 ? B GLU 62 OE1 8 1 Y 1 B GLU 62 ? OE2 ? B GLU 62 OE2 9 1 Y 1 B LYS 101 ? CG ? B LYS 101 CG 10 1 Y 1 B LYS 101 ? CD ? B LYS 101 CD 11 1 Y 1 B LYS 101 ? CE ? B LYS 101 CE 12 1 Y 1 B LYS 101 ? NZ ? B LYS 101 NZ 13 1 Y 1 B LYS 106 ? CG ? B LYS 106 CG 14 1 Y 1 B LYS 106 ? CD ? B LYS 106 CD 15 1 Y 1 B LYS 106 ? CE ? B LYS 106 CE 16 1 Y 1 B LYS 106 ? NZ ? B LYS 106 NZ 17 1 Y 1 B ASN 115 ? CG ? B ASN 115 CG 18 1 Y 1 B ASN 115 ? OD1 ? B ASN 115 OD1 19 1 Y 1 B ASN 115 ? ND2 ? B ASN 115 ND2 20 1 Y 1 B ASP 127 ? CG ? B ASP 127 CG 21 1 Y 1 B ASP 127 ? OD1 ? B ASP 127 OD1 22 1 Y 1 B ASP 127 ? OD2 ? B ASP 127 OD2 23 1 N 0 A B3P 138 ? O2 ? C B3P ? O2 24 1 N 1 A B3P 139 ? C2 ? D B3P 1 C2 25 1 N 1 A B3P 139 ? N2 ? D B3P 1 N2 26 1 N 1 A B3P 139 ? C8 ? D B3P 1 C8 27 1 N 1 A B3P 139 ? C9 ? D B3P 1 C9 28 1 N 1 A B3P 139 ? C10 ? D B3P 1 C10 29 1 N 1 A B3P 139 ? C11 ? D B3P 1 C11 30 1 N 1 A B3P 139 ? O1 ? D B3P 1 O1 31 1 N 1 A B3P 139 ? O2 ? D B3P 1 O2 32 1 N 1 A B3P 139 ? O3 ? D B3P 1 O3 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL' B3P 3 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 B3P 1 138 2 B3P B3P A . D 2 B3P 1 139 3 B3P B3P A . E 2 B3P 1 138 1 B3P B3P B . F 3 HOH 1 140 140 HOH HOH A . F 3 HOH 2 141 1 HOH HOH A . F 3 HOH 3 142 3 HOH HOH A . F 3 HOH 4 143 143 HOH HOH A . F 3 HOH 5 144 6 HOH HOH A . F 3 HOH 6 145 7 HOH HOH A . F 3 HOH 7 146 8 HOH HOH A . F 3 HOH 8 147 9 HOH HOH A . F 3 HOH 9 148 10 HOH HOH A . F 3 HOH 10 149 12 HOH HOH A . F 3 HOH 11 150 150 HOH HOH A . F 3 HOH 12 151 13 HOH HOH A . F 3 HOH 13 152 152 HOH HOH A . F 3 HOH 14 153 15 HOH HOH A . F 3 HOH 15 154 154 HOH HOH A . F 3 HOH 16 155 155 HOH HOH A . F 3 HOH 17 156 156 HOH HOH A . F 3 HOH 18 157 157 HOH HOH A . F 3 HOH 19 158 16 HOH HOH A . F 3 HOH 20 159 20 HOH HOH A . F 3 HOH 21 160 160 HOH HOH A . F 3 HOH 22 161 161 HOH HOH A . F 3 HOH 23 162 24 HOH HOH A . F 3 HOH 24 163 163 HOH HOH A . F 3 HOH 25 164 28 HOH HOH A . F 3 HOH 26 165 32 HOH HOH A . F 3 HOH 27 166 166 HOH HOH A . F 3 HOH 28 167 33 HOH HOH A . F 3 HOH 29 168 168 HOH HOH A . F 3 HOH 30 169 169 HOH HOH A . F 3 HOH 31 170 72 HOH HOH A . F 3 HOH 32 171 171 HOH HOH A . F 3 HOH 33 172 172 HOH HOH A . F 3 HOH 34 173 37 HOH HOH A . F 3 HOH 35 174 38 HOH HOH A . F 3 HOH 36 175 175 HOH HOH A . F 3 HOH 37 176 46 HOH HOH A . F 3 HOH 38 177 177 HOH HOH A . F 3 HOH 39 178 47 HOH HOH A . F 3 HOH 40 179 52 HOH HOH A . F 3 HOH 41 180 180 HOH HOH A . F 3 HOH 42 181 181 HOH HOH A . F 3 HOH 43 182 182 HOH HOH A . F 3 HOH 44 183 183 HOH HOH A . F 3 HOH 45 184 55 HOH HOH A . F 3 HOH 46 185 185 HOH HOH A . F 3 HOH 47 186 186 HOH HOH A . F 3 HOH 48 187 187 HOH HOH A . F 3 HOH 49 188 64 HOH HOH A . F 3 HOH 50 189 65 HOH HOH A . F 3 HOH 51 190 190 HOH HOH A . F 3 HOH 52 191 66 HOH HOH A . F 3 HOH 53 192 192 HOH HOH A . F 3 HOH 54 193 68 HOH HOH A . F 3 HOH 55 194 194 HOH HOH A . F 3 HOH 56 195 77 HOH HOH A . F 3 HOH 57 196 82 HOH HOH A . F 3 HOH 58 197 197 HOH HOH A . F 3 HOH 59 198 83 HOH HOH A . F 3 HOH 60 199 199 HOH HOH A . F 3 HOH 61 200 86 HOH HOH A . F 3 HOH 62 201 94 HOH HOH A . F 3 HOH 63 202 104 HOH HOH A . F 3 HOH 64 203 132 HOH HOH A . F 3 HOH 65 204 133 HOH HOH A . F 3 HOH 66 205 134 HOH HOH A . F 3 HOH 67 206 135 HOH HOH A . F 3 HOH 68 207 136 HOH HOH A . F 3 HOH 69 208 137 HOH HOH A . F 3 HOH 70 209 209 HOH HOH A . F 3 HOH 71 210 138 HOH HOH A . F 3 HOH 72 211 139 HOH HOH A . F 3 HOH 73 213 213 HOH HOH A . F 3 HOH 74 215 215 HOH HOH A . F 3 HOH 75 217 217 HOH HOH A . F 3 HOH 76 218 218 HOH HOH A . F 3 HOH 77 221 221 HOH HOH A . F 3 HOH 78 222 222 HOH HOH A . F 3 HOH 79 223 223 HOH HOH A . F 3 HOH 80 224 224 HOH HOH A . G 3 HOH 1 139 2 HOH HOH B . G 3 HOH 2 140 4 HOH HOH B . G 3 HOH 3 141 141 HOH HOH B . G 3 HOH 4 142 142 HOH HOH B . G 3 HOH 5 143 5 HOH HOH B . G 3 HOH 6 144 144 HOH HOH B . G 3 HOH 7 145 145 HOH HOH B . G 3 HOH 8 146 11 HOH HOH B . G 3 HOH 9 147 147 HOH HOH B . G 3 HOH 10 148 148 HOH HOH B . G 3 HOH 11 149 149 HOH HOH B . G 3 HOH 12 150 14 HOH HOH B . G 3 HOH 13 151 18 HOH HOH B . G 3 HOH 14 152 21 HOH HOH B . G 3 HOH 15 153 22 HOH HOH B . G 3 HOH 16 154 25 HOH HOH B . G 3 HOH 17 155 26 HOH HOH B . G 3 HOH 18 156 29 HOH HOH B . G 3 HOH 19 157 31 HOH HOH B . G 3 HOH 20 158 39 HOH HOH B . G 3 HOH 21 159 40 HOH HOH B . G 3 HOH 22 160 42 HOH HOH B . G 3 HOH 23 161 43 HOH HOH B . G 3 HOH 24 162 162 HOH HOH B . G 3 HOH 25 163 44 HOH HOH B . G 3 HOH 26 164 45 HOH HOH B . G 3 HOH 27 165 54 HOH HOH B . G 3 HOH 28 166 57 HOH HOH B . G 3 HOH 29 167 59 HOH HOH B . G 3 HOH 30 168 71 HOH HOH B . G 3 HOH 31 170 170 HOH HOH B . G 3 HOH 32 171 76 HOH HOH B . G 3 HOH 33 172 81 HOH HOH B . G 3 HOH 34 173 84 HOH HOH B . G 3 HOH 35 174 174 HOH HOH B . G 3 HOH 36 175 85 HOH HOH B . G 3 HOH 37 176 89 HOH HOH B . G 3 HOH 38 177 92 HOH HOH B . G 3 HOH 39 178 93 HOH HOH B . G 3 HOH 40 179 96 HOH HOH B . G 3 HOH 41 180 98 HOH HOH B . G 3 HOH 42 181 100 HOH HOH B . G 3 HOH 43 182 102 HOH HOH B . G 3 HOH 44 183 103 HOH HOH B . G 3 HOH 45 184 105 HOH HOH B . G 3 HOH 46 185 107 HOH HOH B . G 3 HOH 47 186 108 HOH HOH B . G 3 HOH 48 187 109 HOH HOH B . G 3 HOH 49 188 110 HOH HOH B . G 3 HOH 50 189 112 HOH HOH B . G 3 HOH 51 190 113 HOH HOH B . G 3 HOH 52 191 114 HOH HOH B . G 3 HOH 53 192 116 HOH HOH B . G 3 HOH 54 193 118 HOH HOH B . G 3 HOH 55 194 119 HOH HOH B . G 3 HOH 56 195 121 HOH HOH B . G 3 HOH 57 196 122 HOH HOH B . G 3 HOH 58 197 125 HOH HOH B . G 3 HOH 59 198 127 HOH HOH B . G 3 HOH 60 199 129 HOH HOH B . G 3 HOH 61 200 200 HOH HOH B . G 3 HOH 62 201 130 HOH HOH B . G 3 HOH 63 202 202 HOH HOH B . G 3 HOH 64 203 203 HOH HOH B . G 3 HOH 65 204 204 HOH HOH B . G 3 HOH 66 205 205 HOH HOH B . G 3 HOH 67 206 74 HOH HOH B . G 3 HOH 68 207 207 HOH HOH B . G 3 HOH 69 208 208 HOH HOH B . G 3 HOH 70 210 210 HOH HOH B . G 3 HOH 71 211 211 HOH HOH B . G 3 HOH 72 212 212 HOH HOH B . G 3 HOH 73 219 219 HOH HOH B . G 3 HOH 74 220 220 HOH HOH B . #