HEADER IMMUNE SYSTEM 01-DEC-08 3FEW TITLE STRUCTURE AND FUNCTION OF COLICIN S4, A COLICIN WITH A DUPLICATED TITLE 2 RECEPTOR BINDING DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: COLICIN S4; COMPND 3 CHAIN: X; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS COLICIN S4, CELL LYSIS, Y-RAY, CELL KILLING, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR T.ARNOLD,D.LINKE,K.ZETH REVDAT 4 27-DEC-23 3FEW 1 REMARK SEQADV REVDAT 3 01-NOV-17 3FEW 1 REMARK REVDAT 2 07-APR-09 3FEW 1 JRNL REVDAT 1 27-JAN-09 3FEW 0 JRNL AUTH T.ARNOLD,K.ZETH,D.LINKE JRNL TITL STRUCTURE AND FUNCTION OF COLICIN S4, A COLICIN WITH A JRNL TITL 2 DUPLICATED RECEPTOR-BINDING DOMAIN JRNL REF J.BIOL.CHEM. V. 284 6403 2009 JRNL REFN ISSN 0021-9258 JRNL PMID 19056731 JRNL DOI 10.1074/JBC.M808504200 REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 32286 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1614 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.51 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2260 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.4100 REMARK 3 BIN FREE R VALUE SET COUNT : 119 REMARK 3 BIN FREE R VALUE : 0.4560 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3343 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 200 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 59.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.90000 REMARK 3 B22 (A**2) : 0.90000 REMARK 3 B33 (A**2) : -1.36000 REMARK 3 B12 (A**2) : 0.45000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.255 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.220 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.161 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.960 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.917 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3455 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4682 ; 1.334 ; 1.959 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 444 ; 5.627 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 166 ;32.565 ;24.880 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 597 ;17.428 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;16.242 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 511 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2656 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1522 ; 0.223 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2381 ; 0.309 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 199 ; 0.158 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 36 ; 0.171 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 21 ; 0.190 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2162 ; 0.621 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3471 ; 1.153 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1336 ; 1.599 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1205 ; 2.635 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3FEW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-DEC-08. REMARK 100 THE DEPOSITION ID IS D_1000050504. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-DEC-07 REMARK 200 TEMPERATURE (KELVIN) : 90 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9761 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32515 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : 0.06200 REMARK 200 FOR THE DATA SET : 16.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 5.90 REMARK 200 R MERGE FOR SHELL (I) : 0.34200 REMARK 200 R SYM FOR SHELL (I) : 0.43800 REMARK 200 FOR SHELL : 3.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.16M MGCL2, 24% PEG 4000, 20% REMARK 280 GLYCEROL, 80MM TRIS-HCL PH 8.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 120.17000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 69.38018 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 26.67667 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 120.17000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 69.38018 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 26.67667 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 120.17000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 69.38018 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 26.67667 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 120.17000 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 69.38018 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 26.67667 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 120.17000 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 69.38018 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 26.67667 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 120.17000 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 69.38018 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 26.67667 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 138.76036 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 53.35333 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 138.76036 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 53.35333 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 138.76036 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 53.35333 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 138.76036 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 53.35333 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 138.76036 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 53.35333 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 138.76036 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 53.35333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH X 509 LIES ON A SPECIAL POSITION. REMARK 375 HOH X 517 LIES ON A SPECIAL POSITION. REMARK 375 HOH X 523 LIES ON A SPECIAL POSITION. REMARK 375 HOH X 530 LIES ON A SPECIAL POSITION. REMARK 375 HOH X 552 LIES ON A SPECIAL POSITION. REMARK 375 HOH X 683 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET X 1 REMARK 465 ALA X 2 REMARK 465 LYS X 3 REMARK 465 GLU X 4 REMARK 465 LEU X 5 REMARK 465 SER X 6 REMARK 465 VAL X 7 REMARK 465 TYR X 8 REMARK 465 GLY X 9 REMARK 465 PRO X 10 REMARK 465 THR X 11 REMARK 465 ALA X 12 REMARK 465 GLY X 13 REMARK 465 GLU X 14 REMARK 465 SER X 15 REMARK 465 MET X 16 REMARK 465 GLY X 17 REMARK 465 GLY X 18 REMARK 465 THR X 19 REMARK 465 GLY X 20 REMARK 465 ALA X 21 REMARK 465 ASN X 22 REMARK 465 LEU X 23 REMARK 465 ASN X 24 REMARK 465 GLN X 25 REMARK 465 GLN X 26 REMARK 465 GLY X 27 REMARK 465 GLY X 28 REMARK 465 ASN X 29 REMARK 465 ASN X 30 REMARK 465 ASN X 31 REMARK 465 SER X 32 REMARK 465 ASN X 33 REMARK 465 SER X 34 REMARK 465 GLY X 35 REMARK 465 VAL X 36 REMARK 465 HIS X 37 REMARK 465 TRP X 38 REMARK 465 GLY X 39 REMARK 465 GLY X 40 REMARK 465 GLY X 41 REMARK 465 SER X 42 REMARK 465 GLY X 43 REMARK 465 SER X 44 REMARK 465 GLY X 45 REMARK 465 ASN X 46 REMARK 465 GLY X 47 REMARK 465 GLY X 48 REMARK 465 ARG X 49 REMARK 465 GLU X 50 REMARK 465 HIS X 51 REMARK 465 GLY X 52 REMARK 465 SER X 53 REMARK 465 GLN X 54 REMARK 465 THR X 55 REMARK 465 GLY X 56 REMARK 465 TRP X 57 REMARK 465 GLY X 58 REMARK 465 TRP X 59 REMARK 465 SER X 60 REMARK 465 LYS X 61 REMARK 465 THR X 62 REMARK 465 ASN X 63 REMARK 465 ASN X 64 REMARK 465 PRO X 65 REMARK 465 ASP X 66 REMARK 465 HIS X 500 REMARK 465 HIS X 501 REMARK 465 HIS X 502 REMARK 465 HIS X 503 REMARK 465 HIS X 504 REMARK 465 HIS X 505 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR X 158 O REMARK 470 VAL X 159 O REMARK 470 GLN X 192 CG CD OE1 NE2 REMARK 470 GLU X 410 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH X 566 O HOH X 662 2655 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL X 93 58.18 81.77 REMARK 500 PRO X 94 77.14 -107.47 REMARK 500 TYR X 158 -174.29 -51.95 REMARK 500 TYR X 158 165.17 -10.84 REMARK 500 VAL X 159 -35.04 -178.87 REMARK 500 SER X 161 91.74 -47.47 REMARK 500 ASP X 189 44.88 -108.50 REMARK 500 VAL X 306 -62.01 -123.98 REMARK 500 GLN X 344 -122.24 56.05 REMARK 500 ASP X 404 -75.19 -66.96 REMARK 500 ALA X 462 51.50 -163.96 REMARK 500 LYS X 496 88.74 51.11 REMARK 500 PRO X 497 -133.89 -99.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA X 506 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP X 218 OD2 REMARK 620 2 HIS X 223 NE2 88.9 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA X 506 DBREF 3FEW X 1 499 UNP Q9XB47 Q9XB47_ECOLX 1 499 SEQADV 3FEW HIS X 500 UNP Q9XB47 EXPRESSION TAG SEQADV 3FEW HIS X 501 UNP Q9XB47 EXPRESSION TAG SEQADV 3FEW HIS X 502 UNP Q9XB47 EXPRESSION TAG SEQADV 3FEW HIS X 503 UNP Q9XB47 EXPRESSION TAG SEQADV 3FEW HIS X 504 UNP Q9XB47 EXPRESSION TAG SEQADV 3FEW HIS X 505 UNP Q9XB47 EXPRESSION TAG SEQRES 1 X 505 MET ALA LYS GLU LEU SER VAL TYR GLY PRO THR ALA GLY SEQRES 2 X 505 GLU SER MET GLY GLY THR GLY ALA ASN LEU ASN GLN GLN SEQRES 3 X 505 GLY GLY ASN ASN ASN SER ASN SER GLY VAL HIS TRP GLY SEQRES 4 X 505 GLY GLY SER GLY SER GLY ASN GLY GLY ARG GLU HIS GLY SEQRES 5 X 505 SER GLN THR GLY TRP GLY TRP SER LYS THR ASN ASN PRO SEQRES 6 X 505 ASP VAL PRO PRO TYR VAL ASP ASP ASN GLY GLN VAL ARG SEQRES 7 X 505 ILE THR ILE THR ASN GLY LEU VAL LYS THR PRO VAL TYR SEQRES 8 X 505 GLY VAL PRO GLY ALA GLY GLY ASN SER ASP VAL GLN GLY SEQRES 9 X 505 GLY TYR ILE PRO GLU ASN PRO ASN ASP GLU VAL ALA ARG SEQRES 10 X 505 LYS TRP ASP LYS ASN ASN LEU PRO ARG GLU ILE ASP VAL SEQRES 11 X 505 SER ILE ASP GLY PHE LYS TYR ARG VAL THR LEU ASN ASP SEQRES 12 X 505 ASN GLY ARG ALA ILE GLY ILE LEU ARG THR GLY VAL ARG SEQRES 13 X 505 PRO TYR VAL GLY SER GLU LYS ALA LYS ALA GLY ILE MET SEQRES 14 X 505 GLU LYS ILE ASN HIS LYS THR PRO GLU GLU ILE TYR GLU SEQRES 15 X 505 ALA LEU GLY PHE ASN LYS ASP GLU SER GLN ARG GLN GLU SEQRES 16 X 505 LYS ALA LYS GLN GLN ALA GLU ASP ALA TRP ASP ARG LEU SEQRES 17 X 505 PRO PRO ASN VAL ARG LYS PHE ASP VAL ASP VAL GLU GLN SEQRES 18 X 505 PHE HIS TYR LEU VAL VAL LEU ASP ASP TYR GLY ASN VAL SEQRES 19 X 505 LEU SER VAL THR ARG THR GLY VAL ARG PRO TYR VAL GLY SEQRES 20 X 505 SER GLU LYS ALA LYS ALA GLY ILE MET ASP LYS VAL ASP SEQRES 21 X 505 HIS LYS THR PRO GLU GLU ILE TYR GLU ALA LEU GLY PHE SEQRES 22 X 505 ASN ASN GLU GLU PRO GLN ARG GLN ASN GLN ALA LYS LYS SEQRES 23 X 505 ALA ALA TYR ASP VAL PHE TYR SER PHE SER MET ASN ARG SEQRES 24 X 505 ASP ARG ILE GLN SER ASP VAL LEU ASN LYS ALA ALA GLU SEQRES 25 X 505 VAL ILE SER ASP ILE GLY ASN LYS VAL GLY ASP TYR LEU SEQRES 26 X 505 GLY ASP ALA TYR LYS SER LEU ALA ARG GLU ILE ALA ASP SEQRES 27 X 505 ASP VAL LYS ASN PHE GLN GLY LYS THR ILE ARG SER TYR SEQRES 28 X 505 ASP ASP ALA MET ALA SER LEU ASN LYS VAL LEU SER ASN SEQRES 29 X 505 PRO GLY PHE LYS PHE ASN ARG ALA ASP SER ASP ALA LEU SEQRES 30 X 505 ALA ASN VAL TRP ARG SER ILE ASP ALA GLN ASP MET ALA SEQRES 31 X 505 ASN LYS LEU GLY ASN ILE SER LYS ALA PHE LYS PHE ALA SEQRES 32 X 505 ASP VAL VAL MET LYS VAL GLU LYS VAL ARG GLU LYS SER SEQRES 33 X 505 ILE GLU GLY TYR GLU THR GLY ASN TRP GLY PRO LEU MET SEQRES 34 X 505 LEU GLU VAL GLU SER TRP VAL LEU SER GLY ILE ALA SER SEQRES 35 X 505 ALA VAL ALA LEU GLY VAL PHE SER ALA THR LEU GLY ALA SEQRES 36 X 505 TYR ALA LEU SER LEU GLY ALA PRO ALA ILE ALA VAL GLY SEQRES 37 X 505 ILE VAL GLY ILE LEU LEU ALA ALA VAL VAL GLY ALA LEU SEQRES 38 X 505 LEU ASP ASP LYS PHE ALA ASP ALA LEU ASN LYS GLU ILE SEQRES 39 X 505 ILE LYS PRO ALA HIS HIS HIS HIS HIS HIS HIS HET NA X 506 1 HETNAM NA SODIUM ION FORMUL 2 NA NA 1+ FORMUL 3 HOH *200(H2 O) HELIX 1 1 PRO X 89 GLY X 92 5 4 HELIX 2 2 ASP X 113 LYS X 118 1 6 HELIX 3 3 TRP X 119 LEU X 124 5 6 HELIX 4 4 GLU X 162 ILE X 172 1 11 HELIX 5 5 THR X 176 LEU X 184 1 9 HELIX 6 6 ASP X 189 ARG X 207 1 19 HELIX 7 7 LEU X 208 VAL X 212 5 5 HELIX 8 8 SER X 248 VAL X 259 1 12 HELIX 9 9 THR X 263 GLY X 272 1 10 HELIX 10 10 GLU X 276 SER X 294 1 19 HELIX 11 11 PHE X 295 VAL X 306 1 12 HELIX 12 12 VAL X 306 GLY X 326 1 21 HELIX 13 13 GLY X 326 ASN X 342 1 17 HELIX 14 14 SER X 350 SER X 363 1 14 HELIX 15 15 ASN X 370 ILE X 384 1 15 HELIX 16 16 ASP X 385 GLY X 394 1 10 HELIX 17 17 ASN X 395 ILE X 396 5 2 HELIX 18 18 SER X 397 LYS X 401 5 5 HELIX 19 19 VAL X 405 GLY X 423 1 19 HELIX 20 20 TRP X 425 SER X 438 1 14 HELIX 21 21 ALA X 441 LEU X 460 1 20 HELIX 22 22 ILE X 465 ASP X 483 1 19 HELIX 23 23 ASP X 484 ILE X 494 1 11 SHEET 1 A 6 GLY X 105 TYR X 106 0 SHEET 2 A 6 LEU X 85 THR X 88 -1 N THR X 88 O GLY X 105 SHEET 3 A 6 VAL X 77 THR X 82 -1 N THR X 80 O LYS X 87 SHEET 4 A 6 LYS X 214 VAL X 219 1 O ASP X 218 N ILE X 79 SHEET 5 A 6 PHE X 222 LEU X 228 -1 O VAL X 226 N PHE X 215 SHEET 6 A 6 VAL X 234 GLY X 241 -1 O THR X 238 N LEU X 225 SHEET 1 B 3 GLU X 127 ILE X 132 0 SHEET 2 B 3 PHE X 135 LEU X 141 -1 O PHE X 135 N ILE X 132 SHEET 3 B 3 ALA X 147 GLY X 154 -1 O LEU X 151 N ARG X 138 LINK OD2 ASP X 218 NA NA X 506 1555 1555 2.73 LINK NE2 HIS X 223 NA NA X 506 1555 1555 2.65 CISPEP 1 VAL X 67 PRO X 68 0 -7.40 CISPEP 2 GLY X 92 VAL X 93 0 26.13 CISPEP 3 PRO X 94 GLY X 95 0 -0.38 CISPEP 4 GLY X 95 ALA X 96 0 1.76 CISPEP 5 ALA X 96 GLY X 97 0 6.82 CISPEP 6 GLY X 97 GLY X 98 0 1.60 CISPEP 7 GLY X 98 ASN X 99 0 3.54 CISPEP 8 GLY X 160 SER X 161 0 15.92 CISPEP 9 PHE X 402 ALA X 403 0 5.69 CISPEP 10 ASP X 404 VAL X 405 0 -18.53 CISPEP 11 LEU X 460 GLY X 461 0 -8.79 CISPEP 12 GLY X 461 ALA X 462 0 -2.19 CISPEP 13 PRO X 463 ALA X 464 0 -0.54 CISPEP 14 ALA X 498 HIS X 499 0 -2.29 SITE 1 AC1 2 ASP X 218 HIS X 223 CRYST1 240.340 240.340 80.030 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004161 0.002402 0.000000 0.00000 SCALE2 0.000000 0.004804 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012495 0.00000