HEADER TRANSFERASE 03-DEC-08 3FFH TITLE THE CRYSTAL STRUCTURE OF HISTIDINOL-PHOSPHATE AMINOTRANSFERASE FROM TITLE 2 LISTERIA INNOCUA CLIP11262. COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTIDINOL-PHOSPHATE AMINOTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: IMIDAZOLE ACETOL-PHOSPHATE TRANSAMINASE; COMPND 5 EC: 2.6.1.9; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LISTERIA INNOCUA; SOURCE 3 ORGANISM_TAXID: 1642; SOURCE 4 STRAIN: CLIP11262; SOURCE 5 GENE: HISC, LIN2039, LISTERIA INNOCUA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS APC88260, HISTIDINOL-PHOSPHATE AMINOTRANSFERASE, LISTERIA INNOCUA KEYWDS 2 CLIP11262, STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, KEYWDS 3 MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, AMINO-ACID KEYWDS 4 BIOSYNTHESIS, AMINOTRANSFERASE, HISTIDINE BIOSYNTHESIS, PYRIDOXAL KEYWDS 5 PHOSPHATE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR K.TAN,M.GU,A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 2 13-JUL-11 3FFH 1 VERSN REVDAT 1 23-DEC-08 3FFH 0 JRNL AUTH K.TAN,M.GU,A.JOACHIMIAK JRNL TITL THE CRYSTAL STRUCTURE OF HISTIDINOL-PHOSPHATE JRNL TITL 2 AMINOTRANSFERASE FROM LISTERIA INNOCUA CLIP11262. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.31 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0054 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.31 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.85 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 3 NUMBER OF REFLECTIONS : 32731 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1712 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.31 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.37 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1813 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 73.33 REMARK 3 BIN R VALUE (WORKING SET) : 0.2800 REMARK 3 BIN FREE R VALUE SET COUNT : 101 REMARK 3 BIN FREE R VALUE : 0.3060 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5516 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 45 REMARK 3 SOLVENT ATOMS : 125 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.05000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.371 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.251 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.192 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 17.788 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.916 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5631 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7632 ; 1.472 ; 1.989 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 700 ; 6.282 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 245 ;40.141 ;25.265 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1020 ;20.673 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;20.050 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 898 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4120 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3509 ; 0.982 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5677 ; 1.700 ; 3.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2122 ; 1.168 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1955 ; 1.869 ; 3.000 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -1 A 12 REMARK 3 ORIGIN FOR THE GROUP (A): 67.0189 82.4412 86.1322 REMARK 3 T TENSOR REMARK 3 T11: 0.1844 T22: 0.3333 REMARK 3 T33: 0.2537 T12: 0.0245 REMARK 3 T13: 0.1360 T23: 0.1375 REMARK 3 L TENSOR REMARK 3 L11: 5.0835 L22: 10.0015 REMARK 3 L33: 6.5030 L12: -0.1148 REMARK 3 L13: 0.9205 L23: -2.2207 REMARK 3 S TENSOR REMARK 3 S11: -0.1346 S12: 0.4386 S13: -0.2679 REMARK 3 S21: 0.2936 S22: -0.3104 S23: -0.1989 REMARK 3 S31: 0.1344 S32: 1.0714 S33: 0.4450 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 17 A 360 REMARK 3 ORIGIN FOR THE GROUP (A): 72.0483 84.2886 114.9161 REMARK 3 T TENSOR REMARK 3 T11: 0.0529 T22: 0.0524 REMARK 3 T33: 0.0101 T12: -0.0054 REMARK 3 T13: -0.0141 T23: -0.0057 REMARK 3 L TENSOR REMARK 3 L11: 2.7612 L22: 1.4174 REMARK 3 L33: 1.7891 L12: -0.8325 REMARK 3 L13: 0.1484 L23: -0.7059 REMARK 3 S TENSOR REMARK 3 S11: -0.1047 S12: -0.0170 S13: -0.0581 REMARK 3 S21: -0.0871 S22: 0.0823 S23: 0.0750 REMARK 3 S31: 0.0675 S32: -0.1522 S33: 0.0223 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 11 REMARK 3 ORIGIN FOR THE GROUP (A): 51.5801 95.3797 100.6420 REMARK 3 T TENSOR REMARK 3 T11: 0.1130 T22: 0.1690 REMARK 3 T33: 0.1520 T12: 0.0596 REMARK 3 T13: 0.0181 T23: 0.1001 REMARK 3 L TENSOR REMARK 3 L11: 4.3684 L22: 10.2715 REMARK 3 L33: 9.2801 L12: 2.0606 REMARK 3 L13: -0.7441 L23: 1.5771 REMARK 3 S TENSOR REMARK 3 S11: 0.0472 S12: -0.1896 S13: 0.0687 REMARK 3 S21: 0.0805 S22: -0.1054 S23: 0.3893 REMARK 3 S31: 0.3711 S32: -0.4349 S33: 0.0582 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 18 B 360 REMARK 3 ORIGIN FOR THE GROUP (A): 46.3637 67.9998 96.1153 REMARK 3 T TENSOR REMARK 3 T11: 0.0441 T22: 0.0563 REMARK 3 T33: 0.0207 T12: 0.0108 REMARK 3 T13: -0.0147 T23: 0.0069 REMARK 3 L TENSOR REMARK 3 L11: 1.8462 L22: 1.9582 REMARK 3 L33: 1.4107 L12: 0.5297 REMARK 3 L13: -0.8461 L23: -0.9218 REMARK 3 S TENSOR REMARK 3 S11: -0.0005 S12: -0.1569 S13: -0.0587 REMARK 3 S21: 0.1177 S22: -0.0953 S23: -0.1974 REMARK 3 S31: 0.0043 S32: 0.2308 S33: 0.0958 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3FFH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-DEC-08. REMARK 100 THE RCSB ID CODE IS RCSB050525. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-AUG-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97940 REMARK 200 MONOCHROMATOR : SI 111 CRYSTAL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34738 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 42.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.18000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 77.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.65100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD/MLPHARE/DM/RESOLVE/HKL3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MGSO4 20% PEG4000 10% GLYCEROL, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 39.22800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.38650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.83550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 61.38650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 39.22800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.83550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: EXPERIMENTALLY UNKNOWN. THE CHAINS A AND B MAY FORM A DIMER. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -176.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 TYR A 13 REMARK 465 LYS A 14 REMARK 465 PRO A 15 REMARK 465 GLY A 16 REMARK 465 PRO A 62 REMARK 465 ASP A 63 REMARK 465 GLY A 64 REMARK 465 TRP A 65 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 SER B 12 REMARK 465 TYR B 13 REMARK 465 LYS B 14 REMARK 465 PRO B 15 REMARK 465 GLY B 16 REMARK 465 LYS B 17 REMARK 465 ASP B 63 REMARK 465 GLY B 64 REMARK 465 TRP B 65 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 251 CG CD1 CD2 CE1 CE2 CZ REMARK 470 PHE B 251 CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 250 C - N - CA ANGL. DEV. = 10.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 11 -75.81 -73.44 REMARK 500 GLU A 25 41.71 -73.89 REMARK 500 LEU A 26 -44.06 -169.67 REMARK 500 SER A 183 7.02 -66.31 REMARK 500 GLU A 202 145.78 -37.61 REMARK 500 HIS A 204 19.47 -140.25 REMARK 500 LYS A 222 -100.71 -103.92 REMARK 500 ASN A 252 -66.85 -134.66 REMARK 500 LYS B 2 62.21 -103.22 REMARK 500 GLU B 21 -74.92 -50.97 REMARK 500 THR B 29 -109.65 -78.89 REMARK 500 ASN B 37 35.87 -96.22 REMARK 500 SER B 44 152.23 -46.89 REMARK 500 VAL B 56 32.85 -72.00 REMARK 500 HIS B 204 25.79 -140.29 REMARK 500 LEU B 207 -36.29 -32.03 REMARK 500 LYS B 222 -102.15 -93.47 REMARK 500 SER B 228 -98.17 -37.33 REMARK 500 PRO B 250 -21.70 -38.84 REMARK 500 ASN B 252 -94.91 -133.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 361 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 362 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 363 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 364 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 361 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 362 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 363 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 364 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 365 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC88260 RELATED DB: TARGETDB DBREF 3FFH A 1 360 UNP Q92A83 HIS8_LISIN 1 360 DBREF 3FFH B 1 360 UNP Q92A83 HIS8_LISIN 1 360 SEQADV 3FFH SER A -2 UNP Q92A83 EXPRESSION TAG SEQADV 3FFH ASN A -1 UNP Q92A83 EXPRESSION TAG SEQADV 3FFH ALA A 0 UNP Q92A83 EXPRESSION TAG SEQADV 3FFH SER B -2 UNP Q92A83 EXPRESSION TAG SEQADV 3FFH ASN B -1 UNP Q92A83 EXPRESSION TAG SEQADV 3FFH ALA B 0 UNP Q92A83 EXPRESSION TAG SEQRES 1 A 363 SER ASN ALA MSE LYS TRP LYS LYS SER LEU ALA GLY LEU SEQRES 2 A 363 SER SER TYR LYS PRO GLY LYS ARG GLU GLU GLU VAL MSE SEQRES 3 A 363 ALA GLU LEU GLY LEU THR LYS ILE THR LYS LEU SER SER SEQRES 4 A 363 ASN GLU ASN PRO LEU GLY THR SER LYS LYS VAL ALA ALA SEQRES 5 A 363 ILE GLN ALA ASN SER SER VAL GLU THR GLU ILE TYR PRO SEQRES 6 A 363 ASP GLY TRP ALA SER SER LEU ARG LYS GLU VAL ALA ASP SEQRES 7 A 363 PHE TYR GLN LEU GLU GLU GLU GLU LEU ILE PHE THR ALA SEQRES 8 A 363 GLY VAL ASP GLU LEU ILE GLU LEU LEU THR ARG VAL LEU SEQRES 9 A 363 LEU ASP THR THR THR ASN THR VAL MSE ALA THR PRO THR SEQRES 10 A 363 PHE VAL GLN TYR ARG GLN ASN ALA LEU ILE GLU GLY ALA SEQRES 11 A 363 GLU VAL ARG GLU ILE PRO LEU LEU GLN ASP GLY GLU HIS SEQRES 12 A 363 ASP LEU GLU GLY MSE LEU ASN ALA ILE ASP GLU LYS THR SEQRES 13 A 363 THR ILE VAL TRP ILE CYS ASN PRO ASN ASN PRO THR GLY SEQRES 14 A 363 ASN TYR ILE GLU LEU ALA ASP ILE GLN ALA PHE LEU ASP SEQRES 15 A 363 ARG VAL PRO SER ASP VAL LEU VAL VAL LEU ASP GLU ALA SEQRES 16 A 363 TYR ILE GLU TYR VAL THR PRO GLN PRO GLU LYS HIS GLU SEQRES 17 A 363 LYS LEU VAL ARG THR TYR LYS ASN LEU ILE ILE THR ARG SEQRES 18 A 363 THR PHE SER LYS ILE TYR GLY LEU ALA SER ALA ARG VAL SEQRES 19 A 363 GLY TYR GLY ILE ALA ASP LYS GLU ILE ILE ARG GLN LEU SEQRES 20 A 363 ASN ILE VAL ARG PRO PRO PHE ASN THR THR SER ILE GLY SEQRES 21 A 363 GLN LYS LEU ALA ILE GLU ALA ILE LYS ASP GLN ALA PHE SEQRES 22 A 363 ILE GLY GLU CYS ARG THR SER ASN ALA ASN GLY ILE LYS SEQRES 23 A 363 GLN TYR GLU ALA PHE ALA LYS ARG PHE GLU LYS VAL LYS SEQRES 24 A 363 LEU TYR PRO ALA ASN GLY ASN PHE VAL LEU ILE ASP LEU SEQRES 25 A 363 GLY ILE GLU ALA GLY THR ILE PHE SER TYR LEU GLU LYS SEQRES 26 A 363 ASN GLY TYR ILE THR ARG SER GLY ALA ALA LEU GLY PHE SEQRES 27 A 363 PRO THR ALA VAL ARG ILE THR ILE GLY LYS GLU GLU ASP SEQRES 28 A 363 ASN SER ALA VAL ILE ALA LEU LEU GLU LYS LEU LEU SEQRES 1 B 363 SER ASN ALA MSE LYS TRP LYS LYS SER LEU ALA GLY LEU SEQRES 2 B 363 SER SER TYR LYS PRO GLY LYS ARG GLU GLU GLU VAL MSE SEQRES 3 B 363 ALA GLU LEU GLY LEU THR LYS ILE THR LYS LEU SER SER SEQRES 4 B 363 ASN GLU ASN PRO LEU GLY THR SER LYS LYS VAL ALA ALA SEQRES 5 B 363 ILE GLN ALA ASN SER SER VAL GLU THR GLU ILE TYR PRO SEQRES 6 B 363 ASP GLY TRP ALA SER SER LEU ARG LYS GLU VAL ALA ASP SEQRES 7 B 363 PHE TYR GLN LEU GLU GLU GLU GLU LEU ILE PHE THR ALA SEQRES 8 B 363 GLY VAL ASP GLU LEU ILE GLU LEU LEU THR ARG VAL LEU SEQRES 9 B 363 LEU ASP THR THR THR ASN THR VAL MSE ALA THR PRO THR SEQRES 10 B 363 PHE VAL GLN TYR ARG GLN ASN ALA LEU ILE GLU GLY ALA SEQRES 11 B 363 GLU VAL ARG GLU ILE PRO LEU LEU GLN ASP GLY GLU HIS SEQRES 12 B 363 ASP LEU GLU GLY MSE LEU ASN ALA ILE ASP GLU LYS THR SEQRES 13 B 363 THR ILE VAL TRP ILE CYS ASN PRO ASN ASN PRO THR GLY SEQRES 14 B 363 ASN TYR ILE GLU LEU ALA ASP ILE GLN ALA PHE LEU ASP SEQRES 15 B 363 ARG VAL PRO SER ASP VAL LEU VAL VAL LEU ASP GLU ALA SEQRES 16 B 363 TYR ILE GLU TYR VAL THR PRO GLN PRO GLU LYS HIS GLU SEQRES 17 B 363 LYS LEU VAL ARG THR TYR LYS ASN LEU ILE ILE THR ARG SEQRES 18 B 363 THR PHE SER LYS ILE TYR GLY LEU ALA SER ALA ARG VAL SEQRES 19 B 363 GLY TYR GLY ILE ALA ASP LYS GLU ILE ILE ARG GLN LEU SEQRES 20 B 363 ASN ILE VAL ARG PRO PRO PHE ASN THR THR SER ILE GLY SEQRES 21 B 363 GLN LYS LEU ALA ILE GLU ALA ILE LYS ASP GLN ALA PHE SEQRES 22 B 363 ILE GLY GLU CYS ARG THR SER ASN ALA ASN GLY ILE LYS SEQRES 23 B 363 GLN TYR GLU ALA PHE ALA LYS ARG PHE GLU LYS VAL LYS SEQRES 24 B 363 LEU TYR PRO ALA ASN GLY ASN PHE VAL LEU ILE ASP LEU SEQRES 25 B 363 GLY ILE GLU ALA GLY THR ILE PHE SER TYR LEU GLU LYS SEQRES 26 B 363 ASN GLY TYR ILE THR ARG SER GLY ALA ALA LEU GLY PHE SEQRES 27 B 363 PRO THR ALA VAL ARG ILE THR ILE GLY LYS GLU GLU ASP SEQRES 28 B 363 ASN SER ALA VAL ILE ALA LEU LEU GLU LYS LEU LEU MODRES 3FFH MSE A 1 MET SELENOMETHIONINE MODRES 3FFH MSE A 23 MET SELENOMETHIONINE MODRES 3FFH MSE A 110 MET SELENOMETHIONINE MODRES 3FFH MSE A 145 MET SELENOMETHIONINE MODRES 3FFH MSE B 1 MET SELENOMETHIONINE MODRES 3FFH MSE B 23 MET SELENOMETHIONINE MODRES 3FFH MSE B 110 MET SELENOMETHIONINE MODRES 3FFH MSE B 145 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 23 8 HET MSE A 110 8 HET MSE A 145 8 HET MSE B 1 8 HET MSE B 23 8 HET MSE B 110 8 HET MSE B 145 8 HET SO4 A 361 5 HET SO4 A 362 5 HET SO4 A 363 5 HET SO4 A 364 5 HET SO4 B 361 5 HET SO4 B 362 5 HET SO4 B 363 5 HET SO4 B 364 5 HET SO4 B 365 5 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 3 SO4 9(O4 S 2-) FORMUL 12 HOH *125(H2 O) HELIX 1 1 LYS A 4 ALA A 8 5 5 HELIX 2 2 LYS A 17 GLU A 25 1 9 HELIX 3 3 SER A 44 ASN A 53 1 10 HELIX 4 4 ALA A 66 GLN A 78 1 13 HELIX 5 5 GLU A 80 GLU A 82 5 3 HELIX 6 6 GLY A 89 LEU A 102 1 14 HELIX 7 7 VAL A 116 GLY A 126 1 11 HELIX 8 8 ASP A 141 ILE A 149 1 9 HELIX 9 9 GLU A 170 ASP A 179 1 10 HELIX 10 10 TYR A 193 VAL A 197 5 5 HELIX 11 11 HIS A 204 THR A 210 5 7 HELIX 12 12 ASP A 237 VAL A 247 1 11 HELIX 13 13 THR A 254 ASP A 267 1 14 HELIX 14 14 ASP A 267 PHE A 292 1 26 HELIX 15 15 GLU A 312 ASN A 323 1 12 HELIX 16 16 LYS A 345 LEU A 360 1 16 HELIX 17 17 LYS B 4 ALA B 8 5 5 HELIX 18 18 ARG B 18 GLU B 25 1 8 HELIX 19 19 SER B 44 ASN B 53 1 10 HELIX 20 20 ALA B 66 TYR B 77 1 12 HELIX 21 21 GLU B 80 GLU B 82 5 3 HELIX 22 22 GLY B 89 LEU B 102 1 14 HELIX 23 23 VAL B 116 GLU B 125 1 10 HELIX 24 24 ASP B 141 ILE B 149 1 9 HELIX 25 25 GLU B 170 VAL B 181 1 12 HELIX 26 26 TYR B 193 VAL B 197 5 5 HELIX 27 27 LYS B 206 TYR B 211 1 6 HELIX 28 28 ASP B 237 VAL B 247 1 11 HELIX 29 29 THR B 254 ASP B 267 1 14 HELIX 30 30 ASP B 267 PHE B 292 1 26 HELIX 31 31 GLU B 312 LYS B 322 1 11 HELIX 32 32 ALA B 331 LEU B 333 5 3 HELIX 33 33 LYS B 345 LEU B 359 1 15 SHEET 1 A 2 THR A 32 LYS A 33 0 SHEET 2 A 2 TYR A 325 ILE A 326 1 O ILE A 326 N THR A 32 SHEET 1 B 7 LEU A 84 THR A 87 0 SHEET 2 B 7 GLY A 232 ALA A 236 -1 O GLY A 232 N THR A 87 SHEET 3 B 7 LEU A 214 THR A 219 -1 N ILE A 216 O ILE A 235 SHEET 4 B 7 LEU A 186 ASP A 190 1 N LEU A 189 O ILE A 215 SHEET 5 B 7 THR A 153 CYS A 159 1 N ILE A 158 O VAL A 188 SHEET 6 B 7 ASN A 107 THR A 112 1 N VAL A 109 O TRP A 157 SHEET 7 B 7 GLU A 128 PRO A 133 1 O ILE A 132 N MSE A 110 SHEET 1 C 4 LYS A 296 LEU A 297 0 SHEET 2 C 4 PHE A 304 ASP A 308 -1 O ASP A 308 N LYS A 296 SHEET 3 C 4 ALA A 338 THR A 342 -1 O ILE A 341 N VAL A 305 SHEET 4 C 4 ARG A 328 SER A 329 -1 N ARG A 328 O ARG A 340 SHEET 1 D 2 THR B 32 LYS B 33 0 SHEET 2 D 2 TYR B 325 ILE B 326 1 O ILE B 326 N THR B 32 SHEET 1 E 7 LEU B 84 THR B 87 0 SHEET 2 E 7 GLY B 232 ALA B 236 -1 O GLY B 232 N THR B 87 SHEET 3 E 7 LEU B 214 THR B 219 -1 N ARG B 218 O TYR B 233 SHEET 4 E 7 LEU B 186 ASP B 190 1 N LEU B 189 O ILE B 215 SHEET 5 E 7 THR B 153 CYS B 159 1 N ILE B 158 O VAL B 188 SHEET 6 E 7 ASN B 107 THR B 112 1 N VAL B 109 O TRP B 157 SHEET 7 E 7 GLU B 128 PRO B 133 1 O ILE B 132 N MSE B 110 SHEET 1 F 4 LYS B 296 LEU B 297 0 SHEET 2 F 4 PHE B 304 ASP B 308 -1 O ASP B 308 N LYS B 296 SHEET 3 F 4 ALA B 338 THR B 342 -1 O ILE B 341 N VAL B 305 SHEET 4 F 4 ARG B 328 SER B 329 -1 N ARG B 328 O ARG B 340 LINK C ALA A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N LYS A 2 1555 1555 1.32 LINK C VAL A 22 N MSE A 23 1555 1555 1.34 LINK C MSE A 23 N ALA A 24 1555 1555 1.33 LINK C VAL A 109 N MSE A 110 1555 1555 1.32 LINK C MSE A 110 N ALA A 111 1555 1555 1.32 LINK C GLY A 144 N MSE A 145 1555 1555 1.33 LINK C MSE A 145 N LEU A 146 1555 1555 1.33 LINK C ALA B 0 N MSE B 1 1555 1555 1.34 LINK C MSE B 1 N LYS B 2 1555 1555 1.33 LINK C VAL B 22 N MSE B 23 1555 1555 1.33 LINK C MSE B 23 N ALA B 24 1555 1555 1.34 LINK C VAL B 109 N MSE B 110 1555 1555 1.33 LINK C MSE B 110 N ALA B 111 1555 1555 1.33 LINK C GLY B 144 N MSE B 145 1555 1555 1.33 LINK C MSE B 145 N LEU B 146 1555 1555 1.33 CISPEP 1 THR A 112 PRO A 113 0 -5.29 CISPEP 2 ASN A 160 PRO A 161 0 -0.04 CISPEP 3 ASN A 163 PRO A 164 0 24.80 CISPEP 4 THR A 198 PRO A 199 0 -12.79 CISPEP 5 THR B 112 PRO B 113 0 -8.42 CISPEP 6 ASN B 160 PRO B 161 0 6.13 CISPEP 7 ASN B 163 PRO B 164 0 22.06 CISPEP 8 THR B 198 PRO B 199 0 -7.80 SITE 1 AC1 7 GLY A 89 VAL A 90 ASP A 91 THR A 219 SITE 2 AC1 7 SER A 221 LYS A 222 ARG A 230 SITE 1 AC2 6 TYR A 168 GLU A 170 LEU A 171 PRO A 201 SITE 2 AC2 6 GLU A 202 HOH A 394 SITE 1 AC3 5 PHE A 115 ASN A 163 ARG A 328 ARG A 340 SITE 2 AC3 5 HOH A 421 SITE 1 AC4 6 LYS A 46 ASP A 267 ALA A 269 PHE A 270 SITE 2 AC4 6 GLU B 151 GLU B 347 SITE 1 AC5 6 GLY B 89 VAL B 90 ASP B 91 THR B 219 SITE 2 AC5 6 SER B 221 ARG B 230 SITE 1 AC6 6 PHE B 115 ASN B 163 ARG B 328 ARG B 340 SITE 2 AC6 6 HOH B 371 HOH B 413 SITE 1 AC7 5 GLU B 80 GLU B 83 ARG B 209 ASP B 237 SITE 2 AC7 5 LYS B 238 SITE 1 AC8 4 ASP B 267 ALA B 269 PHE B 270 SO4 B 365 SITE 1 AC9 4 SER B 44 LYS B 45 LYS B 46 SO4 B 364 CRYST1 78.456 83.671 122.773 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012746 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011952 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008145 0.00000