data_3FFY # _entry.id 3FFY # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3FFY RCSB RCSB050542 WWPDB D_1000050542 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id APC62130.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 3FFY _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2008-12-04 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Osipiuk, J.' 1 'Volkart, L.' 2 'Cobb, G.' 3 'Kim, Y.' 4 'Joachimiak, A.' 5 'Midwest Center for Structural Genomics (MCSG)' 6 # _citation.id primary _citation.title 'X-ray crystal structure of putative tetrapyrrole (corrin/porphyrin) methyltransferase from Bacteroides fragilis.' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Osipiuk, J.' 1 primary 'Volkart, L.' 2 primary 'Cobb, G.' 3 primary 'Kim, Y.' 4 primary 'Joachimiak, A.' 5 # _cell.length_a 60.536 _cell.length_b 60.536 _cell.length_c 96.065 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 3FFY _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.entry_id 3FFY _symmetry.Int_Tables_number 92 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Putative tetrapyrrole (Corrin/porphyrin) methylase' 13062.601 1 ? ? ? ? 2 non-polymer syn 'SULFATE ION' 96.063 2 ? ? ? ? 3 water nat water 18.015 37 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;SNATAFVPALVASGLPNEKFCFEGFLPQKKGR(MSE)TKLKSLVDEHRT(MSE)VFYESPHRLLKTLTQFAEYFGPERQV SVSREISKIHEETVRGTLSELIEHFTATDPRGEIVIVLAGIDD ; _entity_poly.pdbx_seq_one_letter_code_can ;SNATAFVPALVASGLPNEKFCFEGFLPQKKGRMTKLKSLVDEHRTMVFYESPHRLLKTLTQFAEYFGPERQVSVSREISK IHEETVRGTLSELIEHFTATDPRGEIVIVLAGIDD ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier APC62130.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ASN n 1 3 ALA n 1 4 THR n 1 5 ALA n 1 6 PHE n 1 7 VAL n 1 8 PRO n 1 9 ALA n 1 10 LEU n 1 11 VAL n 1 12 ALA n 1 13 SER n 1 14 GLY n 1 15 LEU n 1 16 PRO n 1 17 ASN n 1 18 GLU n 1 19 LYS n 1 20 PHE n 1 21 CYS n 1 22 PHE n 1 23 GLU n 1 24 GLY n 1 25 PHE n 1 26 LEU n 1 27 PRO n 1 28 GLN n 1 29 LYS n 1 30 LYS n 1 31 GLY n 1 32 ARG n 1 33 MSE n 1 34 THR n 1 35 LYS n 1 36 LEU n 1 37 LYS n 1 38 SER n 1 39 LEU n 1 40 VAL n 1 41 ASP n 1 42 GLU n 1 43 HIS n 1 44 ARG n 1 45 THR n 1 46 MSE n 1 47 VAL n 1 48 PHE n 1 49 TYR n 1 50 GLU n 1 51 SER n 1 52 PRO n 1 53 HIS n 1 54 ARG n 1 55 LEU n 1 56 LEU n 1 57 LYS n 1 58 THR n 1 59 LEU n 1 60 THR n 1 61 GLN n 1 62 PHE n 1 63 ALA n 1 64 GLU n 1 65 TYR n 1 66 PHE n 1 67 GLY n 1 68 PRO n 1 69 GLU n 1 70 ARG n 1 71 GLN n 1 72 VAL n 1 73 SER n 1 74 VAL n 1 75 SER n 1 76 ARG n 1 77 GLU n 1 78 ILE n 1 79 SER n 1 80 LYS n 1 81 ILE n 1 82 HIS n 1 83 GLU n 1 84 GLU n 1 85 THR n 1 86 VAL n 1 87 ARG n 1 88 GLY n 1 89 THR n 1 90 LEU n 1 91 SER n 1 92 GLU n 1 93 LEU n 1 94 ILE n 1 95 GLU n 1 96 HIS n 1 97 PHE n 1 98 THR n 1 99 ALA n 1 100 THR n 1 101 ASP n 1 102 PRO n 1 103 ARG n 1 104 GLY n 1 105 GLU n 1 106 ILE n 1 107 VAL n 1 108 ILE n 1 109 VAL n 1 110 LEU n 1 111 ALA n 1 112 GLY n 1 113 ILE n 1 114 ASP n 1 115 ASP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene BF0585 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'NCTC 9343' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacteroides fragilis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 272559 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pMCSG19 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q5LHP3_BACFN _struct_ref.pdbx_db_accession Q5LHP3 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;ATAFVPALVASGLPNEKFCFEGFLPQKKGRMTKLKSLVDEHRTMVFYESPHRLLKTLTQFAEYFGPERQVSVSREISKIH EETVRGTLSELIEHFTATDPRGEIVIVLAGIDD ; _struct_ref.pdbx_align_begin 112 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3FFY _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 3 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 115 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q5LHP3 _struct_ref_seq.db_align_beg 112 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 224 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 112 _struct_ref_seq.pdbx_auth_seq_align_end 224 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3FFY SER A 1 ? UNP Q5LHP3 ? ? 'expression tag' 110 1 1 3FFY ASN A 2 ? UNP Q5LHP3 ? ? 'expression tag' 111 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3FFY _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 3.37 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 63.49 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 4.5 _exptl_crystal_grow.temp 294 _exptl_crystal_grow.pdbx_details '1.26 M ammonium sulfate, 0.1 M acetate buffer, 0.2 M sodium chloride, pH 4.5, VAPOR DIFFUSION, SITTING DROP, temperature 294K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2008-10-29 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'double crystal monochromator' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9792 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_wavelength_list 0.9792 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID # _reflns.entry_id 3FFY _reflns.d_resolution_high 2.000 _reflns.d_resolution_low 39.1 _reflns.number_obs 11909 _reflns.pdbx_Rmerge_I_obs 0.067 _reflns.pdbx_netI_over_sigmaI 40.087 _reflns.pdbx_chi_squared 1.636 _reflns.pdbx_redundancy 9.000 _reflns.percent_possible_obs 94.100 _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.number_all 11909 _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate 48.1 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.00 _reflns_shell.d_res_low 2.03 _reflns_shell.number_measured_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_unique_obs ? _reflns_shell.Rmerge_I_obs 0.709 _reflns_shell.meanI_over_sigI_obs 2.08 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared 1.085 _reflns_shell.pdbx_redundancy 7.80 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 355 _reflns_shell.percent_possible_all 57.40 _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3FFY _refine.ls_d_res_high 2.000 _refine.ls_d_res_low 39.1 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 93.790 _refine.ls_number_reflns_obs 11852 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : RESIDUAL ONLY ; _refine.ls_R_factor_obs 0.207 _refine.ls_R_factor_R_work 0.206 _refine.ls_wR_factor_R_work 0.288 _refine.ls_R_factor_R_free 0.231 _refine.ls_wR_factor_R_free 0.283 _refine.ls_percent_reflns_R_free 4.800 _refine.ls_number_reflns_R_free 572 _refine.B_iso_mean 34.380 _refine.aniso_B[1][1] 1.840 _refine.aniso_B[2][2] 1.840 _refine.aniso_B[3][3] -3.690 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.963 _refine.correlation_coeff_Fo_to_Fc_free 0.959 _refine.overall_SU_R_Cruickshank_DPI 0.228 _refine.overall_SU_R_free 0.178 _refine.pdbx_overall_ESU_R 0.156 _refine.pdbx_overall_ESU_R_Free 0.141 _refine.overall_SU_ML 0.131 _refine.overall_SU_B 10.945 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.overall_FOM_work_R_set 0.796 _refine.B_iso_max 74.54 _refine.B_iso_min 20.11 _refine.occupancy_max 1.00 _refine.occupancy_min 0.40 _refine.pdbx_ls_sigma_I 0 _refine.ls_number_reflns_all 11852 _refine.ls_R_factor_all 0.207 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 890 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 10 _refine_hist.number_atoms_solvent 37 _refine_hist.number_atoms_total 937 _refine_hist.d_res_high 2.000 _refine_hist.d_res_low 39.1 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 963 0.020 0.022 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 685 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1309 1.758 1.980 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 1666 0.962 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 123 6.143 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 46 38.195 22.609 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 176 19.725 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 10 20.504 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 146 0.103 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1059 0.007 0.021 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 207 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 576 0.916 1.500 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 230 0.198 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 943 1.728 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 387 2.541 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 360 4.181 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 2.001 _refine_ls_shell.d_res_low 2.053 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 56.980 _refine_ls_shell.number_reflns_R_work 493 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.319 _refine_ls_shell.R_factor_R_free 0.400 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 21 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 514 _refine_ls_shell.number_reflns_obs 514 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3FFY _struct.title 'Putative tetrapyrrole (corrin/porphyrin) methyltransferase from Bacteroides fragilis.' _struct.pdbx_descriptor 'Putative tetrapyrrole (Corrin/porphyrin) methylase' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3FFY _struct_keywords.text ;structural genomics, APC62130.1, methyltransferase, PSI-2, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, unknown function ; _struct_keywords.pdbx_keywords 'structural genomics, unknown function' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? # _struct_biol.id 1 _struct_biol.details 'putative biological unit is a dimer based on PISA' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ALA A 5 ? SER A 13 ? ALA A 114 SER A 122 1 ? 9 HELX_P HELX_P2 2 GLY A 31 ? LEU A 39 ? GLY A 140 LEU A 148 1 ? 9 HELX_P HELX_P3 3 ARG A 54 ? GLY A 67 ? ARG A 163 GLY A 176 1 ? 14 HELX_P HELX_P4 4 LEU A 90 ? THR A 100 ? LEU A 199 THR A 209 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A ARG 32 C ? ? ? 1_555 A MSE 33 N ? ? A ARG 141 A MSE 142 1_555 ? ? ? ? ? ? ? 1.335 ? covale2 covale ? ? A MSE 33 C ? ? ? 1_555 A THR 34 N ? ? A MSE 142 A THR 143 1_555 ? ? ? ? ? ? ? 1.332 ? covale3 covale ? ? A THR 45 C ? ? ? 1_555 A MSE 46 N ? ? A THR 154 A MSE 155 1_555 ? ? ? ? ? ? ? 1.322 ? covale4 covale ? ? A MSE 46 C ? ? ? 1_555 A VAL 47 N ? ? A MSE 155 A VAL 156 1_555 ? ? ? ? ? ? ? 1.324 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 PHE A 20 ? GLY A 24 ? PHE A 129 GLY A 133 A 2 THR A 45 ? GLU A 50 ? THR A 154 GLU A 159 A 3 ILE A 106 ? LEU A 110 ? ILE A 215 LEU A 219 A 4 GLN A 71 ? GLU A 77 ? GLN A 180 GLU A 186 A 5 GLU A 83 ? THR A 89 ? GLU A 192 THR A 198 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLU A 23 ? N GLU A 132 O VAL A 47 ? O VAL A 156 A 2 3 N PHE A 48 ? N PHE A 157 O ILE A 108 ? O ILE A 217 A 3 4 O VAL A 109 ? O VAL A 218 N SER A 73 ? N SER A 182 A 4 5 N VAL A 74 ? N VAL A 183 O VAL A 86 ? O VAL A 195 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE SO4 A 225' AC2 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE SO4 A 226' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 LYS A 29 ? LYS A 138 . ? 1_555 ? 2 AC1 6 LYS A 30 ? LYS A 139 . ? 1_555 ? 3 AC1 6 GLY A 31 ? GLY A 140 . ? 1_555 ? 4 AC1 6 ARG A 32 ? ARG A 141 . ? 1_555 ? 5 AC1 6 MSE A 33 ? MSE A 142 . ? 1_555 ? 6 AC1 6 THR A 34 ? THR A 143 . ? 1_555 ? 7 AC2 3 HOH D . ? HOH A 23 . ? 1_555 ? 8 AC2 3 SER A 79 ? SER A 188 . ? 7_555 ? 9 AC2 3 HIS A 96 ? HIS A 205 . ? 1_555 ? # _atom_sites.entry_id 3FFY _atom_sites.fract_transf_matrix[1][1] 0.016519 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016519 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010410 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 110 ? ? ? A . n A 1 2 ASN 2 111 111 ASN ASN A . n A 1 3 ALA 3 112 112 ALA ALA A . n A 1 4 THR 4 113 113 THR THR A . n A 1 5 ALA 5 114 114 ALA ALA A . n A 1 6 PHE 6 115 115 PHE PHE A . n A 1 7 VAL 7 116 116 VAL VAL A . n A 1 8 PRO 8 117 117 PRO PRO A . n A 1 9 ALA 9 118 118 ALA ALA A . n A 1 10 LEU 10 119 119 LEU LEU A . n A 1 11 VAL 11 120 120 VAL VAL A . n A 1 12 ALA 12 121 121 ALA ALA A . n A 1 13 SER 13 122 122 SER SER A . n A 1 14 GLY 14 123 123 GLY GLY A . n A 1 15 LEU 15 124 124 LEU LEU A . n A 1 16 PRO 16 125 125 PRO PRO A . n A 1 17 ASN 17 126 126 ASN ASN A . n A 1 18 GLU 18 127 127 GLU GLU A . n A 1 19 LYS 19 128 128 LYS LYS A . n A 1 20 PHE 20 129 129 PHE PHE A . n A 1 21 CYS 21 130 130 CYS CYS A . n A 1 22 PHE 22 131 131 PHE PHE A . n A 1 23 GLU 23 132 132 GLU GLU A . n A 1 24 GLY 24 133 133 GLY GLY A . n A 1 25 PHE 25 134 134 PHE PHE A . n A 1 26 LEU 26 135 135 LEU LEU A . n A 1 27 PRO 27 136 136 PRO PRO A . n A 1 28 GLN 28 137 137 GLN GLN A . n A 1 29 LYS 29 138 138 LYS LYS A . n A 1 30 LYS 30 139 139 LYS LYS A . n A 1 31 GLY 31 140 140 GLY GLY A . n A 1 32 ARG 32 141 141 ARG ARG A . n A 1 33 MSE 33 142 142 MSE MSE A . n A 1 34 THR 34 143 143 THR THR A . n A 1 35 LYS 35 144 144 LYS LYS A . n A 1 36 LEU 36 145 145 LEU LEU A . n A 1 37 LYS 37 146 146 LYS LYS A . n A 1 38 SER 38 147 147 SER SER A . n A 1 39 LEU 39 148 148 LEU LEU A . n A 1 40 VAL 40 149 149 VAL VAL A . n A 1 41 ASP 41 150 150 ASP ASP A . n A 1 42 GLU 42 151 151 GLU GLU A . n A 1 43 HIS 43 152 152 HIS HIS A . n A 1 44 ARG 44 153 153 ARG ARG A . n A 1 45 THR 45 154 154 THR THR A . n A 1 46 MSE 46 155 155 MSE MSE A . n A 1 47 VAL 47 156 156 VAL VAL A . n A 1 48 PHE 48 157 157 PHE PHE A . n A 1 49 TYR 49 158 158 TYR TYR A . n A 1 50 GLU 50 159 159 GLU GLU A . n A 1 51 SER 51 160 160 SER SER A . n A 1 52 PRO 52 161 161 PRO PRO A . n A 1 53 HIS 53 162 162 HIS HIS A . n A 1 54 ARG 54 163 163 ARG ARG A . n A 1 55 LEU 55 164 164 LEU LEU A . n A 1 56 LEU 56 165 165 LEU LEU A . n A 1 57 LYS 57 166 166 LYS LYS A . n A 1 58 THR 58 167 167 THR THR A . n A 1 59 LEU 59 168 168 LEU LEU A . n A 1 60 THR 60 169 169 THR THR A . n A 1 61 GLN 61 170 170 GLN GLN A . n A 1 62 PHE 62 171 171 PHE PHE A . n A 1 63 ALA 63 172 172 ALA ALA A . n A 1 64 GLU 64 173 173 GLU GLU A . n A 1 65 TYR 65 174 174 TYR TYR A . n A 1 66 PHE 66 175 175 PHE PHE A . n A 1 67 GLY 67 176 176 GLY GLY A . n A 1 68 PRO 68 177 177 PRO PRO A . n A 1 69 GLU 69 178 178 GLU GLU A . n A 1 70 ARG 70 179 179 ARG ARG A . n A 1 71 GLN 71 180 180 GLN GLN A . n A 1 72 VAL 72 181 181 VAL VAL A . n A 1 73 SER 73 182 182 SER SER A . n A 1 74 VAL 74 183 183 VAL VAL A . n A 1 75 SER 75 184 184 SER SER A . n A 1 76 ARG 76 185 185 ARG ARG A . n A 1 77 GLU 77 186 186 GLU GLU A . n A 1 78 ILE 78 187 187 ILE ILE A . n A 1 79 SER 79 188 188 SER SER A . n A 1 80 LYS 80 189 189 LYS LYS A . n A 1 81 ILE 81 190 190 ILE ILE A . n A 1 82 HIS 82 191 191 HIS HIS A . n A 1 83 GLU 83 192 192 GLU GLU A . n A 1 84 GLU 84 193 193 GLU GLU A . n A 1 85 THR 85 194 194 THR THR A . n A 1 86 VAL 86 195 195 VAL VAL A . n A 1 87 ARG 87 196 196 ARG ARG A . n A 1 88 GLY 88 197 197 GLY GLY A . n A 1 89 THR 89 198 198 THR THR A . n A 1 90 LEU 90 199 199 LEU LEU A . n A 1 91 SER 91 200 200 SER SER A . n A 1 92 GLU 92 201 201 GLU GLU A . n A 1 93 LEU 93 202 202 LEU LEU A . n A 1 94 ILE 94 203 203 ILE ILE A . n A 1 95 GLU 95 204 204 GLU GLU A . n A 1 96 HIS 96 205 205 HIS HIS A . n A 1 97 PHE 97 206 206 PHE PHE A . n A 1 98 THR 98 207 207 THR THR A . n A 1 99 ALA 99 208 208 ALA ALA A . n A 1 100 THR 100 209 209 THR THR A . n A 1 101 ASP 101 210 210 ASP ASP A . n A 1 102 PRO 102 211 211 PRO PRO A . n A 1 103 ARG 103 212 212 ARG ARG A . n A 1 104 GLY 104 213 213 GLY GLY A . n A 1 105 GLU 105 214 214 GLU GLU A . n A 1 106 ILE 106 215 215 ILE ILE A . n A 1 107 VAL 107 216 216 VAL VAL A . n A 1 108 ILE 108 217 217 ILE ILE A . n A 1 109 VAL 109 218 218 VAL VAL A . n A 1 110 LEU 110 219 219 LEU LEU A . n A 1 111 ALA 111 220 220 ALA ALA A . n A 1 112 GLY 112 221 221 GLY GLY A . n A 1 113 ILE 113 222 222 ILE ILE A . n A 1 114 ASP 114 223 ? ? ? A . n A 1 115 ASP 115 224 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 1 225 201 SO4 SO4 A . C 2 SO4 1 226 202 SO4 SO4 A . D 3 HOH 1 1 1 HOH HOH A . D 3 HOH 2 2 2 HOH HOH A . D 3 HOH 3 3 3 HOH HOH A . D 3 HOH 4 4 4 HOH HOH A . D 3 HOH 5 5 5 HOH HOH A . D 3 HOH 6 6 6 HOH HOH A . D 3 HOH 7 7 7 HOH HOH A . D 3 HOH 8 8 8 HOH HOH A . D 3 HOH 9 9 9 HOH HOH A . D 3 HOH 10 10 10 HOH HOH A . D 3 HOH 11 11 11 HOH HOH A . D 3 HOH 12 12 12 HOH HOH A . D 3 HOH 13 13 13 HOH HOH A . D 3 HOH 14 14 14 HOH HOH A . D 3 HOH 15 15 15 HOH HOH A . D 3 HOH 16 16 16 HOH HOH A . D 3 HOH 17 17 17 HOH HOH A . D 3 HOH 18 18 18 HOH HOH A . D 3 HOH 19 19 19 HOH HOH A . D 3 HOH 20 20 20 HOH HOH A . D 3 HOH 21 21 21 HOH HOH A . D 3 HOH 22 22 22 HOH HOH A . D 3 HOH 23 23 23 HOH HOH A . D 3 HOH 24 24 24 HOH HOH A . D 3 HOH 25 25 25 HOH HOH A . D 3 HOH 26 26 26 HOH HOH A . D 3 HOH 27 27 27 HOH HOH A . D 3 HOH 28 28 28 HOH HOH A . D 3 HOH 29 29 29 HOH HOH A . D 3 HOH 30 30 30 HOH HOH A . D 3 HOH 31 31 31 HOH HOH A . D 3 HOH 32 32 32 HOH HOH A . D 3 HOH 33 33 33 HOH HOH A . D 3 HOH 34 34 34 HOH HOH A . D 3 HOH 35 35 35 HOH HOH A . D 3 HOH 36 36 36 HOH HOH A . D 3 HOH 37 37 37 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 33 A MSE 142 ? MET SELENOMETHIONINE 2 A MSE 46 A MSE 155 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2230 ? 1 MORE -67 ? 1 'SSA (A^2)' 11320 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 7_555 y,x,-z 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 5 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id D _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-12-16 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Source and taxonomy' 3 2 'Structure model' 'Version format compliance' 4 3 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 3 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.contact_author' 3 3 'Structure model' '_software.contact_author_email' 4 3 'Structure model' '_software.date' 5 3 'Structure model' '_software.language' 6 3 'Structure model' '_software.location' 7 3 'Structure model' '_software.name' 8 3 'Structure model' '_software.type' 9 3 'Structure model' '_software.version' # _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 3.8587 _pdbx_refine_tls.origin_y 23.9104 _pdbx_refine_tls.origin_z -1.5691 _pdbx_refine_tls.T[1][1] 0.2231 _pdbx_refine_tls.T[2][2] 0.1946 _pdbx_refine_tls.T[3][3] 0.0404 _pdbx_refine_tls.T[1][2] 0.0056 _pdbx_refine_tls.T[1][3] 0.0128 _pdbx_refine_tls.T[2][3] -0.0090 _pdbx_refine_tls.L[1][1] 3.5364 _pdbx_refine_tls.L[2][2] 3.3881 _pdbx_refine_tls.L[3][3] 3.5371 _pdbx_refine_tls.L[1][2] -0.7814 _pdbx_refine_tls.L[1][3] 1.1200 _pdbx_refine_tls.L[2][3] 0.7637 _pdbx_refine_tls.S[1][1] 0.0052 _pdbx_refine_tls.S[2][2] 0.1093 _pdbx_refine_tls.S[3][3] -0.1145 _pdbx_refine_tls.S[1][2] -0.2364 _pdbx_refine_tls.S[1][3] 0.2037 _pdbx_refine_tls.S[2][3] 0.1017 _pdbx_refine_tls.S[2][1] 0.0902 _pdbx_refine_tls.S[3][1] -0.3401 _pdbx_refine_tls.S[3][2] -0.2510 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 222 _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.beg_auth_seq_id 111 _pdbx_refine_tls_group.beg_label_asym_id . _pdbx_refine_tls_group.beg_label_seq_id . _pdbx_refine_tls_group.end_label_asym_id . _pdbx_refine_tls_group.end_label_seq_id . _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.selection_details ? # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal DENZO . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 1 SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 2 REFMAC . ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 3 PDB_EXTRACT 3.006 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 4 SBC-Collect . ? ? ? ? 'data collection' ? ? ? 5 HKL-3000 . ? ? ? ? 'data reduction' ? ? ? 6 SHELXD . ? ? ? ? phasing ? ? ? 7 MLPHARE . ? ? ? ? phasing ? ? ? 8 DM . ? ? ? ? phasing ? ? ? 9 SOLVE . ? ? ? ? phasing ? ? ? 10 RESOLVE . ? ? ? ? phasing ? ? ? 11 HKL-3000 . ? ? ? ? phasing ? ? ? 12 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id LYS _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 138 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -141.87 _pdbx_validate_torsion.psi -109.10 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 110 ? A SER 1 2 1 Y 1 A ASP 223 ? A ASP 114 3 1 Y 1 A ASP 224 ? A ASP 115 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 water HOH #