HEADER OXIDOREDUCTASE 05-DEC-08 3FGE TITLE CRYSTAL STRUCTURE OF PUTATIVE FLAVIN REDUCTASE WITH SPLIT BARREL TITLE 2 DOMAIN (YP_750721.1) FROM SHEWANELLA FRIGIDIMARINA NCIMB 400 AT 1.74 TITLE 3 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE FLAVIN REDUCTASE WITH SPLIT BARREL DOMAIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHEWANELLA FRIGIDIMARINA NCIMB 400; SOURCE 3 ORGANISM_TAXID: 318167; SOURCE 4 GENE: SFRI_2037, YP_750721.1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS YP_750721.1, PUTATIVE FLAVIN REDUCTASE WITH SPLIT BARREL DOMAIN, KEYWDS 2 STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 3 PROTEIN STRUCTURE INITIATIVE, PSI-2, UNKNOWN FUNCTION, KEYWDS 4 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 01-FEB-23 3FGE 1 REMARK SEQADV LINK REVDAT 4 24-JUL-19 3FGE 1 REMARK LINK REVDAT 3 25-OCT-17 3FGE 1 REMARK REVDAT 2 13-JUL-11 3FGE 1 VERSN REVDAT 1 30-DEC-08 3FGE 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE FLAVIN REDUCTASE WITH SPLIT JRNL TITL 2 BARREL DOMAIN (YP_750721.1) FROM SHEWANELLA FRIGIDIMARINA JRNL TITL 3 NCIMB 400 AT 1.74 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.74 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.74 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.93 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 19333 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 988 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.74 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.79 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1254 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.68 REMARK 3 BIN R VALUE (WORKING SET) : 0.2300 REMARK 3 BIN FREE R VALUE SET COUNT : 85 REMARK 3 BIN FREE R VALUE : 0.2700 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1498 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 147 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 18.59 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.65000 REMARK 3 B22 (A**2) : 1.45000 REMARK 3 B33 (A**2) : -0.80000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.114 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.116 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.078 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.646 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1605 ; 0.018 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 996 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2195 ; 1.680 ; 1.937 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2455 ; 1.016 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 212 ; 4.679 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 75 ;34.320 ;25.467 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 245 ;10.449 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ;17.830 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 252 ; 0.059 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1868 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 316 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 335 ; 0.214 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1049 ; 0.181 ; 0.300 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 813 ; 0.177 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): 816 ; 0.090 ; 0.500 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 213 ; 0.224 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): 2 ; 0.104 ; 0.500 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 6 ; 0.128 ; 0.500 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 23 ; 0.235 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): 61 ; 0.217 ; 0.300 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 29 ; 0.239 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): 1 ; 0.139 ; 0.500 REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1061 ; 2.315 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 417 ; 0.681 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1662 ; 3.261 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 617 ; 4.998 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 533 ; 6.561 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 24 REMARK 3 ORIGIN FOR THE GROUP (A): 19.9566 16.6486 42.0219 REMARK 3 T TENSOR REMARK 3 T11: -0.0154 T22: -0.0120 REMARK 3 T33: -0.0034 T12: -0.0037 REMARK 3 T13: 0.0258 T23: -0.0003 REMARK 3 L TENSOR REMARK 3 L11: 2.4376 L22: 0.1021 REMARK 3 L33: 4.1578 L12: 0.2163 REMARK 3 L13: -0.9982 L23: -0.6462 REMARK 3 S TENSOR REMARK 3 S11: 0.0024 S12: -0.0943 S13: 0.0403 REMARK 3 S21: -0.0608 S22: 0.0051 S23: 0.2014 REMARK 3 S31: 0.1804 S32: -0.3269 S33: -0.0074 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 25 A 195 REMARK 3 ORIGIN FOR THE GROUP (A): 22.2599 16.5315 13.6479 REMARK 3 T TENSOR REMARK 3 T11: -0.0674 T22: -0.0635 REMARK 3 T33: -0.0374 T12: -0.0077 REMARK 3 T13: -0.0023 T23: 0.0150 REMARK 3 L TENSOR REMARK 3 L11: 1.0726 L22: 0.9517 REMARK 3 L33: 1.9868 L12: 0.1685 REMARK 3 L13: 0.5559 L23: 0.2884 REMARK 3 S TENSOR REMARK 3 S11: 0.0153 S12: -0.0019 S13: -0.0887 REMARK 3 S21: 0.0191 S22: -0.0123 S23: -0.0074 REMARK 3 S31: 0.0304 S32: -0.1658 S33: -0.0030 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1.HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2.ATOM RECORD CONTAINS RESIDUAL B FACTORS REMARK 3 ONLY. 3.A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE REMARK 3 ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 TO ACCOUNT FOR THE REMARK 3 REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4. REMARK 3 UNEXPLAINED ELECTRON DENSITY NEAR THE SIDECHAIN OF CYS 123 WAS REMARK 3 NOT MODELED. 5.CA IONS FROM CRYSTALLIZATION ARE MODELED INTO REMARK 3 THIS STRUCTURE. REMARK 4 REMARK 4 3FGE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-DEC-08. REMARK 100 THE DEPOSITION ID IS D_1000050558. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-OCT-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.94645,0.97967 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL REMARK 200 MONOCHROMETER REMARK 200 OPTICS : ADJUSTABLE FOCUSING MIRRORS IN K REMARK 200 -B GEOMETRY REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.2.5 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19361 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.740 REMARK 200 RESOLUTION RANGE LOW (A) : 27.929 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.08900 REMARK 200 R SYM (I) : 0.08900 REMARK 200 FOR THE DATA SET : 11.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.74 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.58900 REMARK 200 R SYM FOR SHELL (I) : 0.58900 REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2000M CA(OAC)2, 20.0000% PEG-3000, REMARK 280 0.1M TRIS PH 7.0, NANODROP, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.39550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.39550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 29.17550 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 32.75100 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 29.17550 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 32.75100 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 48.39550 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 29.17550 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 32.75100 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 48.39550 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 29.17550 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 32.75100 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: ANALYTICAL SIZE EXCLUSION CHROMATOGRAPHY INDICATES A DIMER REMARK 300 IS A BIOLOGICALLY SIGNIFICANT OLIGIOMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -77.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 58.35100 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 48.39550 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 66 REMARK 465 SER A 67 REMARK 465 VAL A 68 REMARK 465 LYS A 201 REMARK 465 LYS A 202 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 14 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 37 CZ NH1 NH2 REMARK 470 ARG A 64 CG CD NE CZ NH1 NH2 REMARK 470 PRO A 65 CG CD REMARK 470 ARG A 70 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 78 CG CD OE1 NE2 REMARK 470 ARG A 101 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 103 CG OD1 OD2 REMARK 470 LYS A 104 CG CD CE NZ REMARK 470 ASP A 105 CB CG OD1 OD2 REMARK 470 LYS A 128 CE NZ REMARK 470 LYS A 137 CG CD CE NZ REMARK 470 GLN A 142 CG CD OE1 NE2 REMARK 470 TYR A 199 CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SE MSE A 1 O HOH A 226 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 65 C - N - CA ANGL. DEV. = 10.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 147 19.93 -148.15 REMARK 500 VAL A 157 -84.38 -101.94 REMARK 500 VAL A 157 -83.33 -101.94 REMARK 500 ASN A 164 -2.00 73.91 REMARK 500 ASP A 186 15.09 -153.39 REMARK 500 LEU A 194 -63.20 -97.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 203 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE A 109 O REMARK 620 2 THR A 112 O 72.8 REMARK 620 3 LEU A 114 O 88.2 96.7 REMARK 620 4 HOH A 225 O 94.3 85.3 177.1 REMARK 620 5 HOH A 285 O 156.5 83.8 91.7 86.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 204 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 226 O REMARK 620 2 HOH A 265 O 73.8 REMARK 620 3 HOH A 291 O 68.8 106.0 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 205 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 375055 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3FGE A 1 202 UNP Q082D2 Q082D2_SHEFN 1 202 SEQADV 3FGE GLY A 0 UNP Q082D2 EXPRESSION TAG SEQRES 1 A 203 GLY MSE HIS PHE SER LYS GLU HIS ILE ASN ALA LEU GLU SEQRES 2 A 203 THR ARG THR ARG ALA HIS PHE ILE ASN SER LEU SER GLY SEQRES 3 A 203 PHE LYS SER ALA ASN LEU ILE GLY THR GLN ASP ARG GLN SEQRES 4 A 203 GLY ASN THR ASN LEU SER ILE VAL SER SER VAL ILE HIS SEQRES 5 A 203 LEU GLY ALA ASN PRO PRO LEU MSE GLY MSE ILE ILE ARG SEQRES 6 A 203 PRO HIS SER VAL PRO ARG HIS THR PHE GLU ASN ILE MSE SEQRES 7 A 203 GLN THR GLY LEU TYR THR ILE ASN HIS VAL ASN GLN SER SEQRES 8 A 203 ILE TYR GLU GLN ALA HIS GLN THR SER ALA ARG TYR ASP SEQRES 9 A 203 LYS ASP GLU SER GLU PHE GLU ALA THR GLY LEU THR PRO SEQRES 10 A 203 GLU TYR LEU SER ASP PHE CYS ALA PRO PHE VAL LYS GLU SEQRES 11 A 203 SER ARG LEU LYS TYR SER VAL LYS LEU VAL GLU HIS GLN SEQRES 12 A 203 HIS LEU ALA ILE ASN GLY THR GLU PHE VAL ILE GLY GLU SEQRES 13 A 203 ILE VAL ASP VAL TYR VAL ASP ASP ASN ALA VAL GLN THR SEQRES 14 A 203 ASP GLY PHE ILE ASP LEU GLN ALA ILE ASP THR VAL ALA SEQRES 15 A 203 ILE SER GLY LEU ASP CYS TYR TYR THR GLY ASP LYS LEU SEQRES 16 A 203 ALA ARG LEU PRO TYR ALA LYS LYS MODRES 3FGE MSE A 1 MET SELENOMETHIONINE MODRES 3FGE MSE A 59 MET SELENOMETHIONINE MODRES 3FGE MSE A 61 MET SELENOMETHIONINE MODRES 3FGE MSE A 77 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 59 8 HET MSE A 61 8 HET MSE A 77 8 HET CA A 203 1 HET CA A 204 1 HET EDO A 205 4 HETNAM MSE SELENOMETHIONINE HETNAM CA CALCIUM ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 2 CA 2(CA 2+) FORMUL 4 EDO C2 H6 O2 FORMUL 5 HOH *147(H2 O) HELIX 1 1 SER A 4 LEU A 11 1 8 HELIX 2 2 GLU A 12 LEU A 23 1 12 HELIX 3 3 PRO A 69 GLY A 80 1 12 HELIX 4 4 ILE A 91 THR A 98 1 8 HELIX 5 5 SER A 107 THR A 112 1 6 SHEET 1 A 3 LYS A 27 SER A 28 0 SHEET 2 A 3 VAL A 180 SER A 183 -1 O ILE A 182 N LYS A 27 SHEET 3 A 3 CYS A 187 THR A 190 -1 O TYR A 189 N ALA A 181 SHEET 1 B 7 THR A 41 VAL A 46 0 SHEET 2 B 7 ASN A 30 GLN A 35 -1 N ILE A 32 O SER A 44 SHEET 3 B 7 LEU A 81 HIS A 86 -1 O ASN A 85 N LEU A 31 SHEET 4 B 7 LEU A 132 HIS A 143 -1 O LEU A 132 N HIS A 86 SHEET 5 B 7 GLU A 150 VAL A 161 -1 O TYR A 160 N LYS A 133 SHEET 6 B 7 LEU A 58 ILE A 63 -1 N ILE A 63 O GLU A 150 SHEET 7 B 7 ILE A 50 GLY A 53 -1 N ILE A 50 O GLY A 60 SHEET 1 C 2 PRO A 116 GLU A 117 0 SHEET 2 C 2 PHE A 126 VAL A 127 -1 O PHE A 126 N GLU A 117 LINK C GLY A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N HIS A 2 1555 1555 1.33 LINK C LEU A 58 N MSE A 59 1555 1555 1.33 LINK C MSE A 59 N GLY A 60 1555 1555 1.33 LINK C GLY A 60 N MSE A 61 1555 1555 1.33 LINK C MSE A 61 N ILE A 62 1555 1555 1.33 LINK C ILE A 76 N MSE A 77 1555 1555 1.31 LINK C MSE A 77 N GLN A 78 1555 1555 1.34 LINK O PHE A 109 CA CA A 203 1555 1555 2.32 LINK O THR A 112 CA CA A 203 1555 1555 2.50 LINK O LEU A 114 CA CA A 203 1555 1555 2.31 LINK CA CA A 203 O HOH A 225 1555 1555 2.40 LINK CA CA A 203 O HOH A 285 1555 1555 2.30 LINK CA CA A 204 O HOH A 226 1555 1555 2.12 LINK CA CA A 204 O HOH A 265 1555 1555 2.36 LINK CA CA A 204 O HOH A 291 1555 1555 2.60 CISPEP 1 ASN A 55 PRO A 56 0 1.93 CISPEP 2 ASN A 55 PRO A 56 0 2.45 SITE 1 AC1 6 GLU A 6 PHE A 109 THR A 112 LEU A 114 SITE 2 AC1 6 HOH A 225 HOH A 285 SITE 1 AC2 4 ASN A 40 HOH A 226 HOH A 265 HOH A 291 SITE 1 AC3 6 GLY A 0 SER A 130 LYS A 133 VAL A 161 SITE 2 AC3 6 ASP A 162 HOH A 328 CRYST1 58.351 65.502 96.791 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017138 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015267 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010332 0.00000