HEADER UNKNOWN FUNCTION 08-DEC-08 3FGY TITLE CRYSTAL STRUCTURE OF A NTF2-LIKE PROTEIN (BXE_B1094) FROM BURKHOLDERIA TITLE 2 XENOVORANS LB400 AT 1.59 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED NTF2-LIKE PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA XENOVORANS LB400; SOURCE 3 ORGANISM_TAXID: 266265; SOURCE 4 GENE: BXENO_B1893, BXE_B1094, YP_554211.1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS NTF2-LIKE PROTEIN, STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL KEYWDS 2 GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, UNKNOWN KEYWDS 3 FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 6 01-FEB-23 3FGY 1 REMARK SEQADV REVDAT 5 24-JUL-19 3FGY 1 REMARK LINK REVDAT 4 25-OCT-17 3FGY 1 REMARK REVDAT 3 13-JUL-11 3FGY 1 VERSN REVDAT 2 28-JUL-10 3FGY 1 HEADER TITLE KEYWDS REVDAT 1 23-DEC-08 3FGY 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF NTF2-LIKE PROTEIN OF UNKNOWN FUNCTION. JRNL TITL 2 (YP_554211.1) FROM BURKHOLDERIA XENOVORANS LB400 AT 1.59 A JRNL TITL 3 RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.59 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.59 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.04 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 37883 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1890 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.59 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.63 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2609 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.85 REMARK 3 BIN R VALUE (WORKING SET) : 0.2530 REMARK 3 BIN FREE R VALUE SET COUNT : 133 REMARK 3 BIN FREE R VALUE : 0.3010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2028 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 26 REMARK 3 SOLVENT ATOMS : 329 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 20.17 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.67000 REMARK 3 B22 (A**2) : 0.09000 REMARK 3 B33 (A**2) : -0.76000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.092 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.090 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.062 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.302 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.956 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2227 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1508 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3050 ; 1.553 ; 1.955 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3695 ; 0.949 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 306 ; 5.683 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 97 ;36.782 ;23.711 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 378 ;13.872 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;15.995 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 350 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2525 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 469 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 426 ; 0.212 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1589 ; 0.208 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1111 ; 0.172 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1211 ; 0.088 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 248 ; 0.147 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 13 ; 0.202 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 60 ; 0.346 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 32 ; 0.155 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1507 ; 1.952 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 562 ; 0.470 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2248 ; 2.620 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 926 ; 4.220 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 780 ; 5.554 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 134 REMARK 3 ORIGIN FOR THE GROUP (A): 40.6263 44.2831 21.5655 REMARK 3 T TENSOR REMARK 3 T11: -0.0072 T22: 0.0137 REMARK 3 T33: -0.0237 T12: -0.0085 REMARK 3 T13: -0.0343 T23: 0.0092 REMARK 3 L TENSOR REMARK 3 L11: 0.8595 L22: 0.8489 REMARK 3 L33: 1.1947 L12: -0.4471 REMARK 3 L13: -0.2425 L23: -0.3553 REMARK 3 S TENSOR REMARK 3 S11: -0.0653 S12: -0.1959 S13: 0.0234 REMARK 3 S21: 0.1690 S22: 0.0110 S23: -0.1772 REMARK 3 S31: -0.0267 S32: 0.1888 S33: 0.0542 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 130 REMARK 3 ORIGIN FOR THE GROUP (A): 20.5213 50.7171 11.2040 REMARK 3 T TENSOR REMARK 3 T11: -0.0282 T22: -0.0341 REMARK 3 T33: -0.0232 T12: -0.0134 REMARK 3 T13: -0.0101 T23: 0.0063 REMARK 3 L TENSOR REMARK 3 L11: 0.5780 L22: 1.0138 REMARK 3 L33: 0.1358 L12: -0.1747 REMARK 3 L13: 0.0249 L23: -0.1807 REMARK 3 S TENSOR REMARK 3 S11: -0.0108 S12: -0.0195 S13: -0.0055 REMARK 3 S21: -0.0255 S22: 0.0338 S23: 0.1591 REMARK 3 S31: 0.0280 S32: -0.0515 S33: -0.0231 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1.HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2.ATOM RECORDS CONTAIN RESIDUAL B FACTORS REMARK 3 ONLY. 3.A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE REMARK 3 ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED REMARK 3 SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4.PEG REMARK 3 MOLECULES (PEG) FROM THE CRYSTALLIZATION CONDITION HAVE BEEN REMARK 3 MODELED IN THE SOLVENT STRUCTURE. 5.AN UNIDENITIFIED LIGAND (UNL) REMARK 3 HAS BEEN MODELED IN CHAIN B AT WHAT COULD BE THE PUTATIVE REMARK 3 ACTIVE SITE BASED ON COMPARISON WITH A LIGAND BOUND IN THE REMARK 3 LIMONENE-1,2-EPOXIDE HYDROLASE WITH PDB ACCESSION CODE 1NU3. REMARK 4 REMARK 4 3FGY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-DEC-08. REMARK 100 THE DEPOSITION ID IS D_1000050577. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-OCT-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 10.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.94645,0.97967 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL REMARK 200 MONOCHROMETER REMARK 200 OPTICS : ADJUSTABLE FOCUSING MIRRORS IN K REMARK 200 -B GEOMETRY REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37939 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.590 REMARK 200 RESOLUTION RANGE LOW (A) : 29.037 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.04400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.9200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.59 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.65 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.44600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30.0000% PEG-400, 0.1M CAPS PH 10.5, REMARK 280 NANODROP, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.97500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.50000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.04000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 45.50000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.97500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.04000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT CRYSTAL PACKING ANALYSIS AND STATIC REMARK 300 LIGHT SCATTERING SUGGEST THAT THIS IS THE STABLE OLIGOMERIC FORM IN REMARK 300 SOLUTION. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PHE B 131 REMARK 465 ASN B 132 REMARK 465 ALA B 133 REMARK 465 THR B 134 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 19 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 22 CB CG CD CE NZ REMARK 470 LYS A 23 CB CG CD CE NZ REMARK 470 GLU A 31 CD OE1 OE2 REMARK 470 LYS A 110 CE NZ REMARK 470 LYS B 23 CD CE NZ REMARK 470 GLN B 58 CD OE1 NE2 REMARK 470 ARG B 96 CZ NH1 NH2 REMARK 470 LYS B 110 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O1 UNL A 135 O4 PEG A 136 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MSE B 63 SE MSE B 63 CE -0.359 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 131 30.26 70.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL A 135 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 136 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL B 135 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B 136 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 399744 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. A C-TERMINAL REMARK 999 FRAMESHIFT RESULTS IN SEQUENCE CHANGES FOR THE LAST THREE RESIDUES REMARK 999 OF THE TARGET SEQUENCE (Y129T, E130N AND L131F) AND THREE REMARK 999 ADDITIONAL RESIDUES (132N, 133A AND 134T) AT THE C-TERMINUS. DBREF 3FGY A 1 128 UNP Q13M28 Q13M28_BURXL 1 128 DBREF 3FGY B 1 128 UNP Q13M28 Q13M28_BURXL 1 128 SEQADV 3FGY GLY A 0 UNP Q13M28 EXPRESSION TAG SEQADV 3FGY THR A 129 UNP Q13M28 EXPRESSION TAG SEQADV 3FGY ASN A 130 UNP Q13M28 EXPRESSION TAG SEQADV 3FGY PHE A 131 UNP Q13M28 EXPRESSION TAG SEQADV 3FGY ASN A 132 UNP Q13M28 EXPRESSION TAG SEQADV 3FGY ALA A 133 UNP Q13M28 EXPRESSION TAG SEQADV 3FGY THR A 134 UNP Q13M28 EXPRESSION TAG SEQADV 3FGY GLY B 0 UNP Q13M28 EXPRESSION TAG SEQADV 3FGY THR B 129 UNP Q13M28 EXPRESSION TAG SEQADV 3FGY ASN B 130 UNP Q13M28 EXPRESSION TAG SEQADV 3FGY PHE B 131 UNP Q13M28 EXPRESSION TAG SEQADV 3FGY ASN B 132 UNP Q13M28 EXPRESSION TAG SEQADV 3FGY ALA B 133 UNP Q13M28 EXPRESSION TAG SEQADV 3FGY THR B 134 UNP Q13M28 EXPRESSION TAG SEQRES 1 A 135 GLY MSE SER THR GLN GLU ASN VAL GLN ILE VAL LYS ASP SEQRES 2 A 135 PHE PHE ALA ALA MSE GLY ARG GLY ASP LYS LYS GLY LEU SEQRES 3 A 135 LEU ALA VAL SER ALA GLU ASP ILE GLU TRP ILE ILE PRO SEQRES 4 A 135 GLY GLU TRP PRO LEU ALA GLY THR HIS ARG GLY HIS ALA SEQRES 5 A 135 ALA LEU ALA ALA LEU LEU GLN LYS ALA SER GLU MSE VAL SEQRES 6 A 135 GLU ILE SER TYR PRO GLU PRO PRO GLU PHE VAL ALA GLN SEQRES 7 A 135 GLY GLU ARG VAL LEU VAL VAL GLY PHE ALA THR GLY ARG SEQRES 8 A 135 VAL LYS SER THR ASN ARG THR PHE GLU ASP ASP TRP VAL SEQRES 9 A 135 PHE ALA ILE THR VAL ARG LYS SER LYS VAL THR SER ILE SEQRES 10 A 135 ARG GLU TYR ILE ASP THR LEU ALA LEU ALA ARG ALA THR SEQRES 11 A 135 ASN PHE ASN ALA THR SEQRES 1 B 135 GLY MSE SER THR GLN GLU ASN VAL GLN ILE VAL LYS ASP SEQRES 2 B 135 PHE PHE ALA ALA MSE GLY ARG GLY ASP LYS LYS GLY LEU SEQRES 3 B 135 LEU ALA VAL SER ALA GLU ASP ILE GLU TRP ILE ILE PRO SEQRES 4 B 135 GLY GLU TRP PRO LEU ALA GLY THR HIS ARG GLY HIS ALA SEQRES 5 B 135 ALA LEU ALA ALA LEU LEU GLN LYS ALA SER GLU MSE VAL SEQRES 6 B 135 GLU ILE SER TYR PRO GLU PRO PRO GLU PHE VAL ALA GLN SEQRES 7 B 135 GLY GLU ARG VAL LEU VAL VAL GLY PHE ALA THR GLY ARG SEQRES 8 B 135 VAL LYS SER THR ASN ARG THR PHE GLU ASP ASP TRP VAL SEQRES 9 B 135 PHE ALA ILE THR VAL ARG LYS SER LYS VAL THR SER ILE SEQRES 10 B 135 ARG GLU TYR ILE ASP THR LEU ALA LEU ALA ARG ALA THR SEQRES 11 B 135 ASN PHE ASN ALA THR MODRES 3FGY MSE A 1 MET SELENOMETHIONINE MODRES 3FGY MSE A 17 MET SELENOMETHIONINE MODRES 3FGY MSE A 63 MET SELENOMETHIONINE MODRES 3FGY MSE B 1 MET SELENOMETHIONINE MODRES 3FGY MSE B 17 MET SELENOMETHIONINE MODRES 3FGY MSE B 63 MET SELENOMETHIONINE HET MSE A 1 13 HET MSE A 17 8 HET MSE A 63 13 HET MSE B 1 8 HET MSE B 17 13 HET MSE B 63 13 HET UNL A 135 6 HET PEG A 136 7 HET UNL B 135 6 HET PEG B 136 7 HETNAM MSE SELENOMETHIONINE HETNAM UNL UNKNOWN LIGAND HETNAM PEG DI(HYDROXYETHYL)ETHER FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 4 PEG 2(C4 H10 O3) FORMUL 7 HOH *329(H2 O) HELIX 1 1 THR A 3 GLY A 20 1 18 HELIX 2 2 ASP A 21 VAL A 28 1 8 HELIX 3 3 GLY A 49 MSE A 63 1 15 HELIX 4 4 ASP A 121 THR A 129 1 9 HELIX 5 5 SER B 2 GLY B 20 1 19 HELIX 6 6 ASP B 21 VAL B 28 1 8 HELIX 7 7 GLY B 49 MSE B 63 1 15 HELIX 8 8 ASP B 121 ASN B 130 1 10 SHEET 1 A 6 GLY A 45 ARG A 48 0 SHEET 2 A 6 SER A 29 ILE A 37 -1 N TRP A 35 O HIS A 47 SHEET 3 A 6 LYS A 112 TYR A 119 1 O VAL A 113 N ALA A 30 SHEET 4 A 6 THR A 97 ARG A 109 -1 N THR A 107 O THR A 114 SHEET 5 A 6 ARG A 80 VAL A 91 -1 N VAL A 83 O PHE A 104 SHEET 6 A 6 VAL A 64 SER A 67 -1 N SER A 67 O THR A 88 SHEET 1 B 6 GLY A 45 ARG A 48 0 SHEET 2 B 6 SER A 29 ILE A 37 -1 N TRP A 35 O HIS A 47 SHEET 3 B 6 LYS A 112 TYR A 119 1 O VAL A 113 N ALA A 30 SHEET 4 B 6 THR A 97 ARG A 109 -1 N THR A 107 O THR A 114 SHEET 5 B 6 ARG A 80 VAL A 91 -1 N VAL A 83 O PHE A 104 SHEET 6 B 6 GLU A 73 GLN A 77 -1 N VAL A 75 O LEU A 82 SHEET 1 C 6 GLY B 45 ARG B 48 0 SHEET 2 C 6 SER B 29 ILE B 37 -1 N ILE B 37 O GLY B 45 SHEET 3 C 6 LYS B 112 TYR B 119 1 O VAL B 113 N ALA B 30 SHEET 4 C 6 THR B 97 ARG B 109 -1 N ALA B 105 O ARG B 117 SHEET 5 C 6 ARG B 80 VAL B 91 -1 N VAL B 81 O ILE B 106 SHEET 6 C 6 VAL B 64 SER B 67 -1 N SER B 67 O THR B 88 SHEET 1 D 6 GLY B 45 ARG B 48 0 SHEET 2 D 6 SER B 29 ILE B 37 -1 N ILE B 37 O GLY B 45 SHEET 3 D 6 LYS B 112 TYR B 119 1 O VAL B 113 N ALA B 30 SHEET 4 D 6 THR B 97 ARG B 109 -1 N ALA B 105 O ARG B 117 SHEET 5 D 6 ARG B 80 VAL B 91 -1 N VAL B 81 O ILE B 106 SHEET 6 D 6 GLU B 73 GLN B 77 -1 N GLU B 73 O VAL B 84 LINK C GLY A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N SER A 2 1555 1555 1.33 LINK C ALA A 16 N MSE A 17 1555 1555 1.33 LINK C MSE A 17 N GLY A 18 1555 1555 1.33 LINK C GLU A 62 N MSE A 63 1555 1555 1.33 LINK C MSE A 63 N VAL A 64 1555 1555 1.33 LINK C GLY B 0 N MSE B 1 1555 1555 1.34 LINK C MSE B 1 N SER B 2 1555 1555 1.33 LINK C ALA B 16 N MSE B 17 1555 1555 1.34 LINK C MSE B 17 N GLY B 18 1555 1555 1.34 LINK C GLU B 62 N MSE B 63 1555 1555 1.33 LINK C MSE B 63 N VAL B 64 1555 1555 1.32 SITE 1 AC1 7 TRP A 41 ILE A 66 ASP A 100 PHE A 104 SITE 2 AC1 7 GLU A 118 PEG A 136 HOH A 333 SITE 1 AC2 7 TRP A 35 LEU A 57 ALA A 60 GLU A 118 SITE 2 AC2 7 UNL A 135 HOH A 253 HOH A 333 SITE 1 AC3 10 TRP B 41 VAL B 64 ILE B 66 PHE B 98 SITE 2 AC3 10 ASP B 100 TRP B 102 PHE B 104 GLU B 118 SITE 3 AC3 10 PEG B 136 HOH B 210 SITE 1 AC4 6 MSE B 17 LEU B 57 ALA B 60 GLU B 118 SITE 2 AC4 6 UNL B 135 HOH B 236 CRYST1 45.950 66.080 91.000 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021763 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015133 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010989 0.00000