HEADER TRANSPORT PROTEIN/HYDROLASE 09-DEC-08 3FHC TITLE CRYSTAL STRUCTURE OF HUMAN DBP5 IN COMPLEX WITH NUP214 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEAR PORE COMPLEX PROTEIN NUP214; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: NTERMINAL BETA PROPELLER, UNP RESIDUES 1-405; COMPND 5 SYNONYM: NUCLEOPORIN 214KDA, NUP214, NUCLEOPORIN NUP214, 214 KDA COMPND 6 NUCLEOPORIN, PROTEIN CAN; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: ATP-DEPENDENT RNA HELICASE DDX19B; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: NTERMINAL RECA-LIKE DOMAIN, UNP RESIDUES 68-302; COMPND 12 SYNONYM: DEAD-BOX HELICASE 5, DBP5, DEAD BOX PROTEIN 19B, DEAD BOX COMPND 13 RNA HELICASE DEAD5; COMPND 14 EC: 3.6.1.-; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NUP214 (RESIDUES 1-405); SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PETMC; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: DBP5 (RESIDUES 68-302); SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PETMC KEYWDS DEAD-BOX HELICASE, MRNA EXPORT, NUCLEOPORIN, BETA PROPELLER, RECA- KEYWDS 2 LIKE, RNA DEPENDENT ATPASE, CAN, DDX19, DEAD-BOX PROTEIN 19B, KEYWDS 3 NUCLEAR PORE COMPLEX, GLYCOPROTEIN, MRNA TRANSPORT, NUCLEUS, KEYWDS 4 PHOSPHOPROTEIN, PROTEIN TRANSPORT, PROTO-ONCOGENE, TRANSLOCATION, KEYWDS 5 TRANSPORT, ATP-BINDING, HELICASE, HYDROLASE, MEMBRANE, NUCLEOTIDE- KEYWDS 6 BINDING, RNA-BINDING, TRANSPORT PROTEIN-HYDROLASE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.VON MOELLER,E.CONTI REVDAT 6 01-NOV-23 3FHC 1 REMARK REVDAT 5 06-NOV-19 3FHC 1 REMARK REVDAT 4 05-FEB-14 3FHC 1 REMARK VERSN REVDAT 3 10-MAR-09 3FHC 1 JRNL REVDAT 2 03-MAR-09 3FHC 1 JRNL REVDAT 1 17-FEB-09 3FHC 0 JRNL AUTH H.VON MOELLER,C.BASQUIN,E.CONTI JRNL TITL THE MRNA EXPORT PROTEIN DBP5 BINDS RNA AND THE CYTOPLASMIC JRNL TITL 2 NUCLEOPORIN NUP214 IN A MUTUALLY EXCLUSIVE MANNER JRNL REF NAT.STRUCT.MOL.BIOL. V. 16 247 2009 JRNL REFN ISSN 1545-9993 JRNL PMID 19219046 JRNL DOI 10.1038/NSMB.1561 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0063 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.65 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 30169 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1509 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2070 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3280 REMARK 3 BIN FREE R VALUE SET COUNT : 109 REMARK 3 BIN FREE R VALUE : 0.3470 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4736 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 86 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 45.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.45000 REMARK 3 B22 (A**2) : 3.59000 REMARK 3 B33 (A**2) : -2.14000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.436 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.302 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.247 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.023 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.908 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.866 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4778 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6490 ; 1.341 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 596 ; 6.687 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 191 ;38.541 ;25.131 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 823 ;17.313 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;18.878 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 747 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3541 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3016 ; 0.622 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4893 ; 1.183 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1762 ; 1.414 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1597 ; 2.550 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 3FHC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-DEC-08. REMARK 100 THE DEPOSITION ID IS D_1000050591. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-MAR-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99988 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30169 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 47.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.300 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 14.13 REMARK 200 R MERGE (I) : 0.13800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.5900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 13.60 REMARK 200 R MERGE FOR SHELL (I) : 0.36400 REMARK 200 R SYM FOR SHELL (I) : 0.36000 REMARK 200 FOR SHELL : 3.310 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRIES 2OIT AND 3FHT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50MM MES PH 6.0, 900MM NA CITRATE, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 58.70450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 67.35350 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 76.42250 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 58.70450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 67.35350 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 76.42250 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 58.70450 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 67.35350 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 76.42250 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 58.70450 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 67.35350 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 76.42250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 ASP A 3 REMARK 465 GLU A 4 REMARK 465 MET A 5 REMARK 465 ASP A 6 REMARK 465 ALA A 7 REMARK 465 MET A 8 REMARK 465 LYS A 133 REMARK 465 GLN A 134 REMARK 465 GLN A 372 REMARK 465 VAL A 373 REMARK 465 GLU A 374 REMARK 465 ILE A 375 REMARK 465 THR A 376 REMARK 465 ILE A 377 REMARK 465 SER A 378 REMARK 465 ASP A 379 REMARK 465 GLU A 380 REMARK 465 LYS A 381 REMARK 465 THR A 382 REMARK 465 LEU A 383 REMARK 465 PRO A 384 REMARK 465 PRO A 385 REMARK 465 SER B 68 REMARK 465 ASN B 69 REMARK 465 LEU B 70 REMARK 465 VAL B 71 REMARK 465 ASP B 72 REMARK 465 ASN B 73 REMARK 465 THR B 74 REMARK 465 ARG B 299 REMARK 465 GLU B 300 REMARK 465 GLU B 301 REMARK 465 GLU B 302 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 15 CG CD CE NZ REMARK 480 LYS A 79 CG CD CE NZ REMARK 480 GLU A 131 CB CG CD OE1 OE2 REMARK 480 GLU A 236 CG CD OE1 OE2 REMARK 480 LYS A 279 CG CD CE NZ REMARK 480 GLU A 281 CB CG CD OE1 OE2 REMARK 480 LYS A 282 CB CG CD CE NZ REMARK 480 ARG B 82 CG CD NE CZ NH1 NH2 REMARK 480 ASN B 85 CB CG OD1 ND2 REMARK 480 LYS B 100 CD CE NZ REMARK 480 GLN B 139 CD OE1 NE2 REMARK 480 LYS B 161 CD CE NZ REMARK 480 GLU B 173 CG CD OE1 OE2 REMARK 480 GLU B 191 CG CD OE1 OE2 REMARK 480 LYS B 202 CD CE NZ REMARK 480 LEU B 203 CG CD1 CD2 REMARK 480 GLU B 204 CG CD OE1 OE2 REMARK 480 ARG B 205 CB CG CD NE CZ NH1 NH2 REMARK 480 LYS B 235 CE NZ REMARK 480 ARG B 266 CG CD NE CZ NH1 NH2 REMARK 480 LYS B 283 CG CD CE NZ REMARK 480 LYS B 287 CD CE NZ REMARK 480 LEU B 297 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 180 -66.73 -136.93 REMARK 500 LEU A 223 30.97 72.22 REMARK 500 MET A 291 -133.48 59.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3FHT RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN DBP5 IN COMPLEX WITH AMPPNP AND RNA REMARK 900 RELATED ID: 2OIT RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE N-TERMINAL DOMAIN OF THE HUMAN PROTO- REMARK 900 ONCOGENE NUP214/CAN DBREF 3FHC A 1 405 UNP P35658 NU214_HUMAN 1 405 DBREF 3FHC B 68 302 UNP Q9UMR2 DD19B_HUMAN 68 302 SEQRES 1 A 405 MET GLY ASP GLU MET ASP ALA MET ILE PRO GLU ARG GLU SEQRES 2 A 405 MET LYS ASP PHE GLN PHE ARG ALA LEU LYS LYS VAL ARG SEQRES 3 A 405 ILE PHE ASP SER PRO GLU GLU LEU PRO LYS GLU ARG SER SEQRES 4 A 405 SER LEU LEU ALA VAL SER ASN LYS TYR GLY LEU VAL PHE SEQRES 5 A 405 ALA GLY GLY ALA SER GLY LEU GLN ILE PHE PRO THR LYS SEQRES 6 A 405 ASN LEU LEU ILE GLN ASN LYS PRO GLY ASP ASP PRO ASN SEQRES 7 A 405 LYS ILE VAL ASP LYS VAL GLN GLY LEU LEU VAL PRO MET SEQRES 8 A 405 LYS PHE PRO ILE HIS HIS LEU ALA LEU SER CYS ASP ASN SEQRES 9 A 405 LEU THR LEU SER ALA CYS MET MET SER SER GLU TYR GLY SEQRES 10 A 405 SER ILE ILE ALA PHE PHE ASP VAL ARG THR PHE SER ASN SEQRES 11 A 405 GLU ALA LYS GLN GLN LYS ARG PRO PHE ALA TYR HIS LYS SEQRES 12 A 405 LEU LEU LYS ASP ALA GLY GLY MET VAL ILE ASP MET LYS SEQRES 13 A 405 TRP ASN PRO THR VAL PRO SER MET VAL ALA VAL CYS LEU SEQRES 14 A 405 ALA ASP GLY SER ILE ALA VAL LEU GLN VAL THR GLU THR SEQRES 15 A 405 VAL LYS VAL CYS ALA THR LEU PRO SER THR VAL ALA VAL SEQRES 16 A 405 THR SER VAL CYS TRP SER PRO LYS GLY LYS GLN LEU ALA SEQRES 17 A 405 VAL GLY LYS GLN ASN GLY THR VAL VAL GLN TYR LEU PRO SEQRES 18 A 405 THR LEU GLN GLU LYS LYS VAL ILE PRO CYS PRO PRO PHE SEQRES 19 A 405 TYR GLU SER ASP HIS PRO VAL ARG VAL LEU ASP VAL LEU SEQRES 20 A 405 TRP ILE GLY THR TYR VAL PHE ALA ILE VAL TYR ALA ALA SEQRES 21 A 405 ALA ASP GLY THR LEU GLU THR SER PRO ASP VAL VAL MET SEQRES 22 A 405 ALA LEU LEU PRO LYS LYS GLU GLU LYS HIS PRO GLU ILE SEQRES 23 A 405 PHE VAL ASN PHE MET GLU PRO CYS TYR GLY SER CYS THR SEQRES 24 A 405 GLU ARG GLN HIS HIS TYR TYR LEU SER TYR ILE GLU GLU SEQRES 25 A 405 TRP ASP LEU VAL LEU ALA ALA SER ALA ALA SER THR GLU SEQRES 26 A 405 VAL SER ILE LEU ALA ARG GLN SER ASP GLN ILE ASN TRP SEQRES 27 A 405 GLU SER TRP LEU LEU GLU ASP SER SER ARG ALA GLU LEU SEQRES 28 A 405 PRO VAL THR ASP LYS SER ASP ASP SER LEU PRO MET GLY SEQRES 29 A 405 VAL VAL VAL ASP TYR THR ASN GLN VAL GLU ILE THR ILE SEQRES 30 A 405 SER ASP GLU LYS THR LEU PRO PRO ALA PRO VAL LEU MET SEQRES 31 A 405 LEU LEU SER THR ASP GLY VAL LEU CYS PRO PHE TYR MET SEQRES 32 A 405 ILE ASN SEQRES 1 B 235 SER ASN LEU VAL ASP ASN THR ASN GLN VAL GLU VAL LEU SEQRES 2 B 235 GLN ARG ASP PRO ASN SER PRO LEU TYR SER VAL LYS SER SEQRES 3 B 235 PHE GLU GLU LEU ARG LEU LYS PRO GLN LEU LEU GLN GLY SEQRES 4 B 235 VAL TYR ALA MET GLY PHE ASN ARG PRO SER LYS ILE GLN SEQRES 5 B 235 GLU ASN ALA LEU PRO LEU MET LEU ALA GLU PRO PRO GLN SEQRES 6 B 235 ASN LEU ILE ALA GLN SER GLN SER GLY THR GLY LYS THR SEQRES 7 B 235 ALA ALA PHE VAL LEU ALA MET LEU SER GLN VAL GLU PRO SEQRES 8 B 235 ALA ASN LYS TYR PRO GLN CYS LEU CYS LEU SER PRO THR SEQRES 9 B 235 TYR GLU LEU ALA LEU GLN THR GLY LYS VAL ILE GLU GLN SEQRES 10 B 235 MET GLY LYS PHE TYR PRO GLU LEU LYS LEU ALA TYR ALA SEQRES 11 B 235 VAL ARG GLY ASN LYS LEU GLU ARG GLY GLN LYS ILE SER SEQRES 12 B 235 GLU GLN ILE VAL ILE GLY THR PRO GLY THR VAL LEU ASP SEQRES 13 B 235 TRP CYS SER LYS LEU LYS PHE ILE ASP PRO LYS LYS ILE SEQRES 14 B 235 LYS VAL PHE VAL LEU ASP GLU ALA ASP VAL MET ILE ALA SEQRES 15 B 235 THR GLN GLY HIS GLN ASP GLN SER ILE ARG ILE GLN ARG SEQRES 16 B 235 MET LEU PRO ARG ASN CYS GLN MET LEU LEU PHE SER ALA SEQRES 17 B 235 THR PHE GLU ASP SER VAL TRP LYS PHE ALA GLN LYS VAL SEQRES 18 B 235 VAL PRO ASP PRO ASN VAL ILE LYS LEU LYS ARG GLU GLU SEQRES 19 B 235 GLU FORMUL 3 HOH *86(H2 O) HELIX 1 1 THR A 64 LEU A 68 1 5 HELIX 2 2 ARG A 126 ASN A 130 5 5 HELIX 3 3 ASP A 147 GLY A 150 5 4 HELIX 4 4 PRO A 190 VAL A 193 5 4 HELIX 5 5 GLU A 344 ARG A 348 5 5 HELIX 6 6 SER B 93 ARG B 98 5 6 HELIX 7 7 LYS B 100 MET B 110 1 11 HELIX 8 8 SER B 116 ALA B 128 1 13 HELIX 9 9 GLY B 141 VAL B 156 1 16 HELIX 10 10 THR B 171 GLY B 186 1 16 HELIX 11 11 THR B 217 LYS B 227 1 11 HELIX 12 12 ASP B 232 ILE B 236 5 5 HELIX 13 13 GLU B 243 ILE B 248 1 6 HELIX 14 14 GLY B 252 LEU B 264 1 13 HELIX 15 15 GLU B 278 VAL B 289 1 12 SHEET 1 A 5 GLU A 11 GLU A 13 0 SHEET 2 A 5 TRP A 338 LEU A 342 1 O SER A 340 N ARG A 12 SHEET 3 A 5 VAL A 326 ARG A 331 -1 N ALA A 330 O GLU A 339 SHEET 4 A 5 LEU A 315 SER A 320 -1 N VAL A 316 O LEU A 329 SHEET 5 A 5 TYR A 305 ILE A 310 -1 N ILE A 310 O LEU A 315 SHEET 1 B 4 GLN A 18 ALA A 21 0 SHEET 2 B 4 VAL A 397 ILE A 404 -1 O TYR A 402 N ARG A 20 SHEET 3 B 4 LYS A 24 ARG A 26 -1 N VAL A 25 O LEU A 398 SHEET 4 B 4 ILE A 80 VAL A 81 1 O VAL A 81 N LYS A 24 SHEET 1 C 4 GLN A 18 ALA A 21 0 SHEET 2 C 4 VAL A 397 ILE A 404 -1 O TYR A 402 N ARG A 20 SHEET 3 C 4 VAL A 388 SER A 393 -1 N SER A 393 O VAL A 397 SHEET 4 C 4 PRO A 362 ASP A 368 -1 N MET A 363 O LEU A 392 SHEET 1 D 4 LEU A 42 SER A 45 0 SHEET 2 D 4 LEU A 50 GLY A 54 -1 O LEU A 50 N SER A 45 SHEET 3 D 4 LEU A 59 PRO A 63 -1 O PHE A 62 N VAL A 51 SHEET 4 D 4 LEU A 87 VAL A 89 -1 O VAL A 89 N LEU A 59 SHEET 1 E 4 ILE A 95 LEU A 100 0 SHEET 2 E 4 THR A 106 SER A 113 -1 O CYS A 110 N HIS A 96 SHEET 3 E 4 GLY A 117 ASP A 124 -1 O PHE A 123 N LEU A 107 SHEET 4 E 4 ALA A 140 LEU A 145 -1 O HIS A 142 N ILE A 120 SHEET 1 F 4 VAL A 152 TRP A 157 0 SHEET 2 F 4 MET A 164 LEU A 169 -1 O CYS A 168 N ILE A 153 SHEET 3 F 4 ILE A 174 VAL A 179 -1 O LEU A 177 N VAL A 165 SHEET 4 F 4 VAL A 183 LEU A 189 -1 O ALA A 187 N VAL A 176 SHEET 1 G 4 VAL A 195 TRP A 200 0 SHEET 2 G 4 LEU A 207 LYS A 211 -1 O GLY A 210 N THR A 196 SHEET 3 G 4 VAL A 216 TYR A 219 -1 O TYR A 219 N LEU A 207 SHEET 4 G 4 GLU A 225 ILE A 229 -1 O ILE A 229 N VAL A 216 SHEET 1 H 4 VAL A 241 GLY A 250 0 SHEET 2 H 4 VAL A 253 ALA A 260 -1 O VAL A 257 N LEU A 244 SHEET 3 H 4 ASP A 270 LEU A 275 -1 O VAL A 272 N ILE A 256 SHEET 4 H 4 ILE A 286 ASN A 289 -1 O ILE A 286 N LEU A 275 SHEET 1 I 8 VAL B 77 GLN B 81 0 SHEET 2 I 8 ASN B 293 LEU B 297 -1 O VAL B 294 N LEU B 80 SHEET 3 I 8 LEU B 134 GLN B 137 1 N ILE B 135 O ASN B 293 SHEET 4 I 8 GLN B 269 SER B 274 1 O LEU B 272 N LEU B 134 SHEET 5 I 8 VAL B 238 LEU B 241 1 N PHE B 239 O GLN B 269 SHEET 6 I 8 CYS B 165 LEU B 168 1 N LEU B 166 O VAL B 240 SHEET 7 I 8 ILE B 213 GLY B 216 1 O VAL B 214 N CYS B 165 SHEET 8 I 8 LEU B 194 ALA B 197 1 N ALA B 195 O ILE B 215 CISPEP 1 GLU A 281 LYS A 282 0 -4.22 CISPEP 2 GLU B 129 PRO B 130 0 -6.47 CRYST1 117.409 134.707 152.845 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008517 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007424 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006543 0.00000