HEADER HYDROLASE 09-DEC-08 3FHD TITLE CRYSTAL STRUCTURE OF THE SHUTOFF AND EXONUCLEASE PROTEIN FROM KAPOSIS TITLE 2 SARCOMA ASSOCIATED HERPESVIRUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ORF 37; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SHUTOFF AND EXONUCLEASE PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN HERPESVIRUS 8 TYPE M; SOURCE 3 ORGANISM_COMMON: KAPOSI'S SARCOMA-ASSOCIATED HERPESVIRUS; SOURCE 4 ORGANISM_TAXID: 435895; SOURCE 5 GENE: ORF37; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PTH27 KEYWDS ENASE LIKE PD-(D/E)XK SUPERFAMILY, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.L.DAHLROTH,D.GURMU,F.SCHMITZBERGER,J.HAAS,H.ERLANDSEN,P.NORDLUND REVDAT 4 20-MAR-24 3FHD 1 REMARK SEQADV REVDAT 3 27-JUL-11 3FHD 1 JRNL REVDAT 2 13-JUL-11 3FHD 1 VERSN REVDAT 1 24-NOV-09 3FHD 0 JRNL AUTH S.L.DAHLROTH,D.GURMU,F.SCHMITZBERGER,H.ENGMAN,J.HAAS, JRNL AUTH 2 H.ERLANDSEN,P.NORDLUND JRNL TITL CRYSTAL STRUCTURE OF THE SHUTOFF AND EXONUCLEASE PROTEIN JRNL TITL 2 FROM THE ONCOGENIC KAPOSI'S SARCOMA-ASSOCIATED HERPESVIRUS JRNL REF FEBS J. V. 276 6636 2009 JRNL REFN ISSN 1742-464X JRNL PMID 19843164 JRNL DOI 10.1111/J.1742-4658.2009.07374.X REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.63 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 39306 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2096 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2884 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.32 REMARK 3 BIN R VALUE (WORKING SET) : 0.2870 REMARK 3 BIN FREE R VALUE SET COUNT : 173 REMARK 3 BIN FREE R VALUE : 0.3470 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3591 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 216 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 28.12 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.41000 REMARK 3 B22 (A**2) : 0.30000 REMARK 3 B33 (A**2) : -0.26000 REMARK 3 B12 (A**2) : 0.44000 REMARK 3 B13 (A**2) : 0.29000 REMARK 3 B23 (A**2) : 0.27000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.140 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.136 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.107 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.145 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3697 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5021 ; 1.350 ; 1.951 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 453 ; 5.720 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 165 ;33.498 ;23.515 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 588 ;13.496 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;19.420 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 549 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2813 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1555 ; 0.199 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2514 ; 0.304 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 200 ; 0.139 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 58 ; 0.181 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 11 ; 0.191 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2343 ; 0.876 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3657 ; 1.482 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1575 ; 2.270 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1364 ; 3.308 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 8 A 182 REMARK 3 ORIGIN FOR THE GROUP (A): 12.8365 44.3530 73.4134 REMARK 3 T TENSOR REMARK 3 T11: 0.0471 T22: 0.0034 REMARK 3 T33: 0.0509 T12: -0.0064 REMARK 3 T13: -0.0301 T23: 0.0002 REMARK 3 L TENSOR REMARK 3 L11: 1.9479 L22: 2.0097 REMARK 3 L33: 1.4242 L12: -0.3911 REMARK 3 L13: -0.3040 L23: 0.2265 REMARK 3 S TENSOR REMARK 3 S11: -0.0365 S12: -0.1640 S13: 0.2038 REMARK 3 S21: 0.2143 S22: 0.0680 S23: -0.1234 REMARK 3 S31: -0.2490 S32: -0.0386 S33: -0.0315 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 183 A 424 REMARK 3 ORIGIN FOR THE GROUP (A): 12.8093 29.9065 44.9253 REMARK 3 T TENSOR REMARK 3 T11: 0.0714 T22: 0.0820 REMARK 3 T33: 0.0680 T12: -0.0378 REMARK 3 T13: -0.0045 T23: -0.0416 REMARK 3 L TENSOR REMARK 3 L11: 0.8467 L22: 1.3076 REMARK 3 L33: 2.2691 L12: -0.3343 REMARK 3 L13: -0.5894 L23: -0.8172 REMARK 3 S TENSOR REMARK 3 S11: 0.0055 S12: 0.2757 S13: -0.1589 REMARK 3 S21: -0.3686 S22: -0.1250 S23: -0.0028 REMARK 3 S31: 0.3390 S32: -0.2177 S33: 0.1195 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 425 A 481 REMARK 3 ORIGIN FOR THE GROUP (A): 16.4627 30.3798 63.1555 REMARK 3 T TENSOR REMARK 3 T11: -0.0200 T22: 0.0410 REMARK 3 T33: 0.1240 T12: -0.0158 REMARK 3 T13: 0.0061 T23: 0.0054 REMARK 3 L TENSOR REMARK 3 L11: 1.2893 L22: 1.5794 REMARK 3 L33: 2.6063 L12: -0.1537 REMARK 3 L13: -0.2877 L23: -0.2190 REMARK 3 S TENSOR REMARK 3 S11: -0.0530 S12: -0.0819 S13: -0.1388 REMARK 3 S21: 0.0573 S22: -0.0225 S23: -0.1301 REMARK 3 S31: 0.3123 S32: -0.0678 S33: 0.0755 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3FHD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-DEC-08. REMARK 100 THE DEPOSITION ID IS D_1000050592. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JUN-07; 28-JUN-07 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : BESSY; ESRF REMARK 200 BEAMLINE : 14.2; ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97954; 0.93300 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL; DIAMOND (111), REMARK 200 GE(220) REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM; ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41764 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 46.630 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M LITHIUM SULFATE, 0.1M BIS-TRIS, REMARK 280 25%PEG 3350, PH 5.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -21 REMARK 465 GLY A -20 REMARK 465 PRO A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 LEU A -12 REMARK 465 GLU A -11 REMARK 465 SER A -10 REMARK 465 THR A -9 REMARK 465 SER A -8 REMARK 465 LEU A -7 REMARK 465 TYR A -6 REMARK 465 LYS A -5 REMARK 465 LYS A -4 REMARK 465 ALA A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 ALA A 3 REMARK 465 THR A 4 REMARK 465 PRO A 5 REMARK 465 THR A 6 REMARK 465 TRP A 165 REMARK 465 PRO A 166 REMARK 465 ILE A 167 REMARK 465 THR A 168 REMARK 465 ASN A 169 REMARK 465 ASN A 170 REMARK 465 HIS A 171 REMARK 465 PHE A 172 REMARK 465 VAL A 173 REMARK 465 ALA A 174 REMARK 465 GLY A 175 REMARK 465 PRO A 176 REMARK 465 LEU A 177 REMARK 465 ALA A 178 REMARK 465 PHE A 179 REMARK 465 PRO A 315 REMARK 465 ARG A 316 REMARK 465 LYS A 317 REMARK 465 LYS A 318 REMARK 465 VAL A 482 REMARK 465 PRO A 483 REMARK 465 HIS A 484 REMARK 465 SER A 485 REMARK 465 PRO A 486 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 13 CG CD OE1 OE2 REMARK 470 ASP A 26 CG OD1 OD2 REMARK 470 GLU A 76 CG CD OE1 OE2 REMARK 470 GLU A 81 CG CD OE1 OE2 REMARK 470 PRO A 164 O REMARK 470 ARG A 182 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 203 CG CD1 CD2 REMARK 470 GLU A 231 CG CD OE1 OE2 REMARK 470 ARG A 233 CG CD NE CZ NH1 NH2 REMARK 470 CYS A 258 SG REMARK 470 ARG A 267 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 270 CG CD OE1 OE2 REMARK 470 ASP A 279 CG OD1 OD2 REMARK 470 ASP A 308 CG OD1 OD2 REMARK 470 LEU A 397 CG CD1 CD2 REMARK 470 HIS A 430 CG ND1 CD2 CE1 NE2 REMARK 470 ASP A 466 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 80 87.26 -151.22 REMARK 500 GLN A 129 -123.43 51.34 REMARK 500 GLN A 154 -64.10 -122.85 REMARK 500 TYR A 282 31.66 -93.12 REMARK 500 LYS A 286 78.73 -119.38 REMARK 500 HIS A 325 34.95 -91.72 REMARK 500 SER A 336 24.36 -145.41 REMARK 500 THR A 337 -60.15 -121.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 490 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 221 OD2 REMARK 620 2 GLU A 244 OE2 79.0 REMARK 620 3 ILE A 245 O 89.9 89.1 REMARK 620 4 HOH A 687 O 92.9 69.0 156.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 487 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 488 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 489 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 490 DBREF 3FHD A 1 486 UNP P88925 P88925_HHV8 1 486 SEQADV 3FHD MET A -21 UNP P88925 EXPRESSION TAG SEQADV 3FHD GLY A -20 UNP P88925 EXPRESSION TAG SEQADV 3FHD PRO A -19 UNP P88925 EXPRESSION TAG SEQADV 3FHD HIS A -18 UNP P88925 EXPRESSION TAG SEQADV 3FHD HIS A -17 UNP P88925 EXPRESSION TAG SEQADV 3FHD HIS A -16 UNP P88925 EXPRESSION TAG SEQADV 3FHD HIS A -15 UNP P88925 EXPRESSION TAG SEQADV 3FHD HIS A -14 UNP P88925 EXPRESSION TAG SEQADV 3FHD HIS A -13 UNP P88925 EXPRESSION TAG SEQADV 3FHD LEU A -12 UNP P88925 EXPRESSION TAG SEQADV 3FHD GLU A -11 UNP P88925 EXPRESSION TAG SEQADV 3FHD SER A -10 UNP P88925 EXPRESSION TAG SEQADV 3FHD THR A -9 UNP P88925 EXPRESSION TAG SEQADV 3FHD SER A -8 UNP P88925 EXPRESSION TAG SEQADV 3FHD LEU A -7 UNP P88925 EXPRESSION TAG SEQADV 3FHD TYR A -6 UNP P88925 EXPRESSION TAG SEQADV 3FHD LYS A -5 UNP P88925 EXPRESSION TAG SEQADV 3FHD LYS A -4 UNP P88925 EXPRESSION TAG SEQADV 3FHD ALA A -3 UNP P88925 EXPRESSION TAG SEQADV 3FHD GLY A -2 UNP P88925 EXPRESSION TAG SEQADV 3FHD SER A -1 UNP P88925 EXPRESSION TAG SEQADV 3FHD ALA A 0 UNP P88925 EXPRESSION TAG SEQRES 1 A 508 MET GLY PRO HIS HIS HIS HIS HIS HIS LEU GLU SER THR SEQRES 2 A 508 SER LEU TYR LYS LYS ALA GLY SER ALA MET GLU ALA THR SEQRES 3 A 508 PRO THR PRO ALA ASP LEU PHE SER GLU ASP TYR LEU VAL SEQRES 4 A 508 ASP THR LEU ASP GLY LEU THR VAL ASP ASP GLN GLN ALA SEQRES 5 A 508 VAL LEU ALA SER LEU SER PHE SER LYS PHE LEU LYS HIS SEQRES 6 A 508 ALA LYS VAL ARG ASP TRP CYS ALA GLN ALA LYS ILE GLN SEQRES 7 A 508 PRO SER MET PRO ALA LEU ARG MET ALA TYR ASN TYR PHE SEQRES 8 A 508 LEU PHE SER LYS VAL GLY GLU PHE ILE GLY SER GLU ASP SEQRES 9 A 508 VAL CYS ASN PHE PHE VAL ASP ARG VAL PHE GLY GLY VAL SEQRES 10 A 508 ARG LEU LEU ASP VAL ALA SER VAL TYR ALA ALA CYS SER SEQRES 11 A 508 GLN MET ASN ALA HIS GLN ARG HIS HIS ILE CYS CYS LEU SEQRES 12 A 508 VAL GLU ARG ALA THR SER SER GLN SER LEU ASN PRO VAL SEQRES 13 A 508 TRP ASP ALA LEU ARG ASP GLY ILE ILE SER SER SER LYS SEQRES 14 A 508 PHE HIS TRP ALA VAL LYS GLN GLN ASN THR SER LYS LYS SEQRES 15 A 508 ILE PHE SER PRO TRP PRO ILE THR ASN ASN HIS PHE VAL SEQRES 16 A 508 ALA GLY PRO LEU ALA PHE GLY LEU ARG CYS GLU GLU VAL SEQRES 17 A 508 VAL LYS THR LEU LEU ALA THR LEU LEU HIS PRO ASP GLU SEQRES 18 A 508 THR ASN CYS LEU ASP TYR GLY PHE MET GLN SER PRO GLN SEQRES 19 A 508 ASN GLY ILE PHE GLY VAL SER LEU ASP PHE ALA ALA ASN SEQRES 20 A 508 VAL LYS THR ASP THR GLU GLY ARG LEU GLN PHE ASP PRO SEQRES 21 A 508 ASN CYS LYS VAL TYR GLU ILE LYS CYS ARG PHE LYS TYR SEQRES 22 A 508 THR PHE ALA LYS MET GLU CYS ASP PRO ILE TYR ALA ALA SEQRES 23 A 508 TYR GLN ARG LEU TYR GLU ALA PRO GLY LYS LEU ALA LEU SEQRES 24 A 508 LYS ASP PHE PHE TYR SER ILE SER LYS PRO ALA VAL GLU SEQRES 25 A 508 TYR VAL GLY LEU GLY LYS LEU PRO SER GLU SER ASP TYR SEQRES 26 A 508 LEU VAL ALA TYR ASP GLN GLU TRP GLU ALA CYS PRO ARG SEQRES 27 A 508 LYS LYS ARG LYS LEU THR PRO LEU HIS ASN LEU ILE ARG SEQRES 28 A 508 GLU CYS ILE LEU HIS ASN SER THR THR GLU SER ASP VAL SEQRES 29 A 508 TYR VAL LEU THR ASP PRO GLN ASP THR ARG GLY GLN ILE SEQRES 30 A 508 SER ILE LYS ALA ARG PHE LYS ALA ASN LEU PHE VAL ASN SEQRES 31 A 508 VAL ARG HIS SER TYR PHE TYR GLN VAL LEU LEU GLN SER SEQRES 32 A 508 SER ILE VAL GLU GLU TYR ILE GLY LEU ASP SER GLY ILE SEQRES 33 A 508 PRO ARG LEU GLY SER PRO LYS TYR TYR ILE ALA THR GLY SEQRES 34 A 508 PHE PHE ARG LYS ARG GLY TYR GLN ASP PRO VAL ASN CYS SEQRES 35 A 508 THR ILE GLY GLY ASP ALA LEU ASP PRO HIS VAL GLU ILE SEQRES 36 A 508 PRO THR LEU LEU ILE VAL THR PRO VAL TYR PHE PRO ARG SEQRES 37 A 508 GLY ALA LYS HIS ARG LEU LEU HIS GLN ALA ALA ASN PHE SEQRES 38 A 508 TRP SER ARG SER ALA LYS ASP THR PHE PRO TYR ILE LYS SEQRES 39 A 508 TRP ASP PHE SER TYR LEU SER ALA ASN VAL PRO HIS SER SEQRES 40 A 508 PRO HET SO4 A 487 5 HET SO4 A 488 5 HET SO4 A 489 5 HET MG A 490 1 HETNAM SO4 SULFATE ION HETNAM MG MAGNESIUM ION FORMUL 2 SO4 3(O4 S 2-) FORMUL 5 MG MG 2+ FORMUL 6 HOH *216(H2 O) HELIX 1 1 TYR A 15 ASP A 21 1 7 HELIX 2 2 THR A 24 SER A 34 1 11 HELIX 3 3 SER A 36 HIS A 43 1 8 HELIX 4 4 HIS A 43 ALA A 51 1 9 HELIX 5 5 PRO A 60 GLY A 79 1 20 HELIX 6 6 GLU A 81 VAL A 91 1 11 HELIX 7 7 ASP A 99 GLN A 109 1 11 HELIX 8 8 ASN A 111 THR A 126 1 16 HELIX 9 9 SER A 127 ASN A 132 5 6 HELIX 10 10 VAL A 134 ASP A 140 1 7 HELIX 11 11 LYS A 147 GLN A 154 1 8 HELIX 12 12 GLY A 180 LEU A 195 1 16 HELIX 13 13 PHE A 249 THR A 252 5 4 HELIX 14 14 ASP A 259 ALA A 271 1 13 HELIX 15 15 GLY A 273 TYR A 282 1 10 HELIX 16 16 ASP A 308 GLU A 312 5 5 HELIX 17 17 THR A 322 LEU A 324 5 3 HELIX 18 18 HIS A 325 HIS A 334 1 10 HELIX 19 19 ASP A 347 ARG A 352 1 6 HELIX 20 20 HIS A 371 ASP A 391 1 21 HELIX 21 21 PRO A 445 PHE A 468 1 24 HELIX 22 22 PHE A 475 ASN A 481 1 7 SHEET 1 A 3 ILE A 143 SER A 144 0 SHEET 2 A 3 PHE A 216 VAL A 218 1 O GLY A 217 N ILE A 143 SHEET 3 A 3 MET A 208 GLN A 209 -1 N MET A 208 O VAL A 218 SHEET 1 B 7 ASN A 201 CYS A 202 0 SHEET 2 B 7 PHE A 222 THR A 228 -1 O ALA A 223 N CYS A 202 SHEET 3 B 7 LEU A 234 CYS A 247 -1 O GLN A 235 N LYS A 227 SHEET 4 B 7 LYS A 401 ARG A 410 1 O LYS A 401 N VAL A 242 SHEET 5 B 7 ILE A 433 VAL A 442 -1 O ILE A 438 N THR A 406 SHEET 6 B 7 SER A 340 LEU A 345 -1 N TYR A 343 O LEU A 437 SHEET 7 B 7 ILE A 357 ALA A 363 -1 O PHE A 361 N VAL A 342 SHEET 1 C 3 VAL A 289 TYR A 291 0 SHEET 2 C 3 LEU A 304 ALA A 306 1 O ALA A 306 N GLU A 290 SHEET 3 C 3 PHE A 366 VAL A 367 -1 O PHE A 366 N VAL A 305 SHEET 1 D 2 THR A 421 ILE A 422 0 SHEET 2 D 2 ASP A 425 ALA A 426 -1 O ASP A 425 N ILE A 422 LINK OD2 ASP A 221 MG MG A 490 1555 1555 2.39 LINK OE2 GLU A 244 MG MG A 490 1555 1555 2.38 LINK O ILE A 245 MG MG A 490 1555 1555 2.38 LINK MG MG A 490 O HOH A 687 1555 1555 2.83 CISPEP 1 MET A 59 PRO A 60 0 11.14 CISPEP 2 GLU A 231 GLY A 232 0 -16.75 SITE 1 AC1 8 ARG A 139 SER A 144 SER A 145 SER A 146 SITE 2 AC1 8 VAL A 218 SER A 219 GLN A 376 HOH A 529 SITE 1 AC2 4 CYS A 247 ARG A 248 PHE A 249 LYS A 250 SITE 1 AC3 6 ARG A 319 ARG A 370 ARG A 396 LEU A 397 SITE 2 AC3 6 HOH A 501 HOH A 706 SITE 1 AC4 5 GLU A 184 ASP A 221 GLU A 244 ILE A 245 SITE 2 AC4 5 HOH A 687 CRYST1 43.247 48.905 67.294 95.48 106.86 104.27 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023123 0.005881 0.008198 0.00000 SCALE2 0.000000 0.021099 0.003860 0.00000 SCALE3 0.000000 0.000000 0.015785 0.00000