HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 09-DEC-08 3FHK TITLE CRYSTAL STRUCTURE OF APC1446, B.SUBTILIS YPHP DISULFIDE ISOMERASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: UPF0403 PROTEIN YPHP; COMPND 3 CHAIN: A, D, E, F; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 GENE: BSU21860, YPHP; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS DISULFIDE ISOMERASE, THIOREDOXIN SUPERFAMILY, CXC MOTIF, STRUCTURAL KEYWDS 2 GENOMICS, SURFACE ENTROPY REDUCTION, SER, PSI-2, PROTEIN STRUCTURE KEYWDS 3 INITIATIVE, ISFI, INTEGRATED CENTER FOR STRUCTURE AND FUNCTION KEYWDS 4 INNOVATION, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR U.DEREWENDA,T.BOCZEK,D.R.COOPER,M.YU,L.HUNG,Z.S.DEREWENDA,INTEGRATED AUTHOR 2 CENTER FOR STRUCTURE AND FUNCTION INNOVATION (ISFI) REVDAT 5 21-FEB-24 3FHK 1 REMARK REVDAT 4 20-OCT-21 3FHK 1 REMARK SEQADV REVDAT 3 24-JUL-19 3FHK 1 REMARK REVDAT 2 10-NOV-09 3FHK 1 JRNL REVDAT 1 01-SEP-09 3FHK 0 JRNL AUTH U.DEREWENDA,T.BOCZEK,K.L.GORRES,M.YU,L.W.HUNG,D.COOPER, JRNL AUTH 2 A.JOACHIMIAK,R.T.RAINES,Z.S.DEREWENDA JRNL TITL STRUCTURE AND FUNCTION OF BACILLUS SUBTILIS YPHP, A JRNL TITL 2 PROKARYOTIC DISULFIDE ISOMERASE WITH A CXC CATALYTIC MOTIF . JRNL REF BIOCHEMISTRY V. 48 8664 2009 JRNL REFN ISSN 0006-2960 JRNL PMID 19653655 JRNL DOI 10.1021/BI900437Z REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 31840 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1593 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 75.5467 - 5.1147 1.00 3127 160 0.2016 0.2334 REMARK 3 2 5.1147 - 4.0597 1.00 2912 159 0.1456 0.2057 REMARK 3 3 4.0597 - 3.5466 1.00 2865 141 0.1535 0.1908 REMARK 3 4 3.5466 - 3.2223 1.00 2804 170 0.1700 0.2523 REMARK 3 5 3.2223 - 2.9913 1.00 2797 154 0.1974 0.2666 REMARK 3 6 2.9913 - 2.8150 0.98 2794 139 0.2009 0.2814 REMARK 3 7 2.8150 - 2.6740 0.97 2695 145 0.2108 0.2698 REMARK 3 8 2.6740 - 2.5576 0.95 2663 139 0.2165 0.3035 REMARK 3 9 2.5576 - 2.4591 0.93 2596 137 0.2310 0.3140 REMARK 3 10 2.4591 - 2.3742 0.90 2533 123 0.2645 0.3013 REMARK 3 11 2.3742 - 2.3000 0.90 2461 126 0.3178 0.3736 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.35 REMARK 3 B_SOL : 58.63 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.700 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.37000 REMARK 3 B22 (A**2) : -0.37000 REMARK 3 B33 (A**2) : 0.73000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 4616 REMARK 3 ANGLE : 1.017 6261 REMARK 3 CHIRALITY : 0.069 705 REMARK 3 PLANARITY : 0.004 820 REMARK 3 DIHEDRAL : 18.898 1692 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN F REMARK 3 ORIGIN FOR THE GROUP (A): 70.0016 32.2351 -28.1221 REMARK 3 T TENSOR REMARK 3 T11: 0.0143 T22: 0.3013 REMARK 3 T33: 0.2111 T12: 0.0113 REMARK 3 T13: -0.0162 T23: -0.0663 REMARK 3 L TENSOR REMARK 3 L11: 1.7769 L22: 1.6372 REMARK 3 L33: 2.5303 L12: -0.1686 REMARK 3 L13: 1.1737 L23: 0.1921 REMARK 3 S TENSOR REMARK 3 S11: -0.1055 S12: -0.2010 S13: 0.2357 REMARK 3 S21: -0.0260 S22: 0.0101 S23: -0.0993 REMARK 3 S31: -0.1227 S32: -0.2580 S33: 0.0715 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3FHK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-JAN-09. REMARK 100 THE DEPOSITION ID IS D_1000050599. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-MAY-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97950, 0.9796, 0.9393 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : KOHZU: DOUBLE CRYSTAL SI(111) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31840 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.11900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.39 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.41900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELXE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2M AMMONIUM SULFATE, 100MM TRIS, 5% REMARK 280 PEP 629., PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 151.01200 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 34.08050 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 34.08050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 75.50600 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 34.08050 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 34.08050 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 226.51800 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 34.08050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 34.08050 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 75.50600 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 34.08050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 34.08050 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 226.51800 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 151.01200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: MONOMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -195.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER D -2 REMARK 465 ASN D -1 REMARK 465 ALA D 0 REMARK 465 CYS D 144 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 32 CD OE1 OE2 REMARK 470 LYS A 40 NZ REMARK 470 LYS A 73 NZ REMARK 470 GLU A 130 CD OE1 OE2 REMARK 470 LYS A 134 CD CE NZ REMARK 470 GLU D 6 CG CD OE1 OE2 REMARK 470 GLU D 32 CD OE1 OE2 REMARK 470 LYS D 87 NZ REMARK 470 GLU D 130 CG CD OE1 OE2 REMARK 470 GLU E 32 CG CD OE1 OE2 REMARK 470 ASN E 36 ND2 REMARK 470 LYS E 40 CE NZ REMARK 470 LEU E 59 CD1 CD2 REMARK 470 SER F -2 CB OG REMARK 470 ASN F 36 ND2 REMARK 470 LYS F 40 CD CE NZ REMARK 470 LYS F 111 CE NZ REMARK 470 GLU F 130 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 59 -57.64 -130.54 REMARK 500 LEU D 59 -66.80 -131.41 REMARK 500 ASP D 86 74.25 -111.43 REMARK 500 MET D 129 -74.25 -39.34 REMARK 500 LEU E 59 -64.58 -128.15 REMARK 500 LEU F 59 -59.03 -129.37 REMARK 500 ASN F 71 132.02 -172.86 REMARK 500 ASP F 86 69.85 -110.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 145 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 145 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 146 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 E 145 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 E 146 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 146 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 E 147 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 147 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 F 145 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 147 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 F 146 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 F 147 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC1446 RELATED DB: TARGETDB DBREF 3FHK A 1 144 UNP P54170 YPHP_BACSU 1 144 DBREF 3FHK D 1 144 UNP P54170 YPHP_BACSU 1 144 DBREF 3FHK E 1 144 UNP P54170 YPHP_BACSU 1 144 DBREF 3FHK F 1 144 UNP P54170 YPHP_BACSU 1 144 SEQADV 3FHK SER A -2 UNP P54170 EXPRESSION TAG SEQADV 3FHK ASN A -1 UNP P54170 EXPRESSION TAG SEQADV 3FHK ALA A 0 UNP P54170 EXPRESSION TAG SEQADV 3FHK ALA A 100 UNP P54170 GLN 100 ENGINEERED MUTATION SEQADV 3FHK ALA A 101 UNP P54170 GLU 101 ENGINEERED MUTATION SEQADV 3FHK SER D -2 UNP P54170 EXPRESSION TAG SEQADV 3FHK ASN D -1 UNP P54170 EXPRESSION TAG SEQADV 3FHK ALA D 0 UNP P54170 EXPRESSION TAG SEQADV 3FHK ALA D 100 UNP P54170 GLN 100 ENGINEERED MUTATION SEQADV 3FHK ALA D 101 UNP P54170 GLU 101 ENGINEERED MUTATION SEQADV 3FHK SER E -2 UNP P54170 EXPRESSION TAG SEQADV 3FHK ASN E -1 UNP P54170 EXPRESSION TAG SEQADV 3FHK ALA E 0 UNP P54170 EXPRESSION TAG SEQADV 3FHK ALA E 100 UNP P54170 GLN 100 ENGINEERED MUTATION SEQADV 3FHK ALA E 101 UNP P54170 GLU 101 ENGINEERED MUTATION SEQADV 3FHK SER F -2 UNP P54170 EXPRESSION TAG SEQADV 3FHK ASN F -1 UNP P54170 EXPRESSION TAG SEQADV 3FHK ALA F 0 UNP P54170 EXPRESSION TAG SEQADV 3FHK ALA F 100 UNP P54170 GLN 100 ENGINEERED MUTATION SEQADV 3FHK ALA F 101 UNP P54170 GLU 101 ENGINEERED MUTATION SEQRES 1 A 147 SER ASN ALA MET SER MET ALA TYR GLU GLU TYR MET ARG SEQRES 2 A 147 GLN LEU VAL VAL PRO MET ARG ARG GLU LEU THR GLY ALA SEQRES 3 A 147 GLY PHE GLU GLU LEU THR THR ALA GLU GLU VAL GLU ASN SEQRES 4 A 147 PHE MET GLU LYS ALA GLU GLY THR THR LEU VAL VAL VAL SEQRES 5 A 147 ASN SER VAL CYS GLY CYS ALA ALA GLY LEU ALA ARG PRO SEQRES 6 A 147 ALA ALA THR GLN ALA VAL LEU GLN ASN ASP LYS THR PRO SEQRES 7 A 147 ASP ASN THR VAL THR VAL PHE ALA GLY GLN ASP LYS GLU SEQRES 8 A 147 ALA THR ALA LYS MET ARG GLU TYR PHE THR GLY ALA ALA SEQRES 9 A 147 PRO SER SER PRO SER MET ALA LEU LEU LYS GLY LYS GLU SEQRES 10 A 147 VAL VAL HIS PHE ILE PRO ARG HIS GLU ILE GLU GLY HIS SEQRES 11 A 147 ASP MET GLU GLU ILE MET LYS ASN LEU THR ALA ALA PHE SEQRES 12 A 147 ASP ALA HIS CYS SEQRES 1 D 147 SER ASN ALA MET SER MET ALA TYR GLU GLU TYR MET ARG SEQRES 2 D 147 GLN LEU VAL VAL PRO MET ARG ARG GLU LEU THR GLY ALA SEQRES 3 D 147 GLY PHE GLU GLU LEU THR THR ALA GLU GLU VAL GLU ASN SEQRES 4 D 147 PHE MET GLU LYS ALA GLU GLY THR THR LEU VAL VAL VAL SEQRES 5 D 147 ASN SER VAL CYS GLY CYS ALA ALA GLY LEU ALA ARG PRO SEQRES 6 D 147 ALA ALA THR GLN ALA VAL LEU GLN ASN ASP LYS THR PRO SEQRES 7 D 147 ASP ASN THR VAL THR VAL PHE ALA GLY GLN ASP LYS GLU SEQRES 8 D 147 ALA THR ALA LYS MET ARG GLU TYR PHE THR GLY ALA ALA SEQRES 9 D 147 PRO SER SER PRO SER MET ALA LEU LEU LYS GLY LYS GLU SEQRES 10 D 147 VAL VAL HIS PHE ILE PRO ARG HIS GLU ILE GLU GLY HIS SEQRES 11 D 147 ASP MET GLU GLU ILE MET LYS ASN LEU THR ALA ALA PHE SEQRES 12 D 147 ASP ALA HIS CYS SEQRES 1 E 147 SER ASN ALA MET SER MET ALA TYR GLU GLU TYR MET ARG SEQRES 2 E 147 GLN LEU VAL VAL PRO MET ARG ARG GLU LEU THR GLY ALA SEQRES 3 E 147 GLY PHE GLU GLU LEU THR THR ALA GLU GLU VAL GLU ASN SEQRES 4 E 147 PHE MET GLU LYS ALA GLU GLY THR THR LEU VAL VAL VAL SEQRES 5 E 147 ASN SER VAL CYS GLY CYS ALA ALA GLY LEU ALA ARG PRO SEQRES 6 E 147 ALA ALA THR GLN ALA VAL LEU GLN ASN ASP LYS THR PRO SEQRES 7 E 147 ASP ASN THR VAL THR VAL PHE ALA GLY GLN ASP LYS GLU SEQRES 8 E 147 ALA THR ALA LYS MET ARG GLU TYR PHE THR GLY ALA ALA SEQRES 9 E 147 PRO SER SER PRO SER MET ALA LEU LEU LYS GLY LYS GLU SEQRES 10 E 147 VAL VAL HIS PHE ILE PRO ARG HIS GLU ILE GLU GLY HIS SEQRES 11 E 147 ASP MET GLU GLU ILE MET LYS ASN LEU THR ALA ALA PHE SEQRES 12 E 147 ASP ALA HIS CYS SEQRES 1 F 147 SER ASN ALA MET SER MET ALA TYR GLU GLU TYR MET ARG SEQRES 2 F 147 GLN LEU VAL VAL PRO MET ARG ARG GLU LEU THR GLY ALA SEQRES 3 F 147 GLY PHE GLU GLU LEU THR THR ALA GLU GLU VAL GLU ASN SEQRES 4 F 147 PHE MET GLU LYS ALA GLU GLY THR THR LEU VAL VAL VAL SEQRES 5 F 147 ASN SER VAL CYS GLY CYS ALA ALA GLY LEU ALA ARG PRO SEQRES 6 F 147 ALA ALA THR GLN ALA VAL LEU GLN ASN ASP LYS THR PRO SEQRES 7 F 147 ASP ASN THR VAL THR VAL PHE ALA GLY GLN ASP LYS GLU SEQRES 8 F 147 ALA THR ALA LYS MET ARG GLU TYR PHE THR GLY ALA ALA SEQRES 9 F 147 PRO SER SER PRO SER MET ALA LEU LEU LYS GLY LYS GLU SEQRES 10 F 147 VAL VAL HIS PHE ILE PRO ARG HIS GLU ILE GLU GLY HIS SEQRES 11 F 147 ASP MET GLU GLU ILE MET LYS ASN LEU THR ALA ALA PHE SEQRES 12 F 147 ASP ALA HIS CYS HET SO4 A 145 5 HET SO4 A 146 5 HET SO4 A 147 5 HET SO4 D 145 5 HET SO4 D 146 5 HET SO4 D 147 5 HET SO4 E 145 5 HET SO4 E 146 5 HET SO4 E 147 5 HET SO4 F 145 5 HET SO4 F 146 5 HET SO4 F 147 5 HETNAM SO4 SULFATE ION FORMUL 5 SO4 12(O4 S 2-) FORMUL 17 HOH *249(H2 O) HELIX 1 1 SER A -2 GLY A 22 1 25 HELIX 2 2 THR A 30 ALA A 41 1 12 HELIX 3 3 CYS A 53 LEU A 59 1 7 HELIX 4 4 LEU A 59 ASN A 71 1 13 HELIX 5 5 ASP A 86 GLU A 95 1 10 HELIX 6 6 PRO A 120 ILE A 124 5 5 HELIX 7 7 ASP A 128 CYS A 144 1 17 HELIX 8 8 MET D 1 VAL D 13 1 13 HELIX 9 9 VAL D 13 GLY D 22 1 10 HELIX 10 10 THR D 30 ALA D 41 1 12 HELIX 11 11 CYS D 53 LEU D 59 1 7 HELIX 12 12 LEU D 59 ASN D 71 1 13 HELIX 13 13 ASP D 86 TYR D 96 1 11 HELIX 14 14 PRO D 120 ILE D 124 5 5 HELIX 15 15 ASP D 128 HIS D 143 1 16 HELIX 16 16 ASN E -1 VAL E 13 1 15 HELIX 17 17 VAL E 13 GLY E 22 1 10 HELIX 18 18 THR E 30 ALA E 41 1 12 HELIX 19 19 CYS E 53 LEU E 59 1 7 HELIX 20 20 LEU E 59 ASN E 71 1 13 HELIX 21 21 ASP E 86 TYR E 96 1 11 HELIX 22 22 PRO E 120 GLU E 125 1 6 HELIX 23 23 ASP E 128 CYS E 144 1 17 HELIX 24 24 ASN F -1 GLY F 22 1 24 HELIX 25 25 THR F 30 LYS F 40 1 11 HELIX 26 26 CYS F 53 LEU F 59 1 7 HELIX 27 27 LEU F 59 GLN F 70 1 12 HELIX 28 28 ASP F 86 GLU F 95 1 10 HELIX 29 29 TYR F 96 THR F 98 5 3 HELIX 30 30 PRO F 120 ILE F 124 5 5 HELIX 31 31 ASP F 128 CYS F 144 1 17 SHEET 1 A 5 GLU A 26 GLU A 27 0 SHEET 2 A 5 ASN A 77 PHE A 82 1 O THR A 80 N GLU A 26 SHEET 3 A 5 THR A 44 ASN A 50 1 N ASN A 50 O VAL A 81 SHEET 4 A 5 SER A 106 LYS A 111 -1 O ALA A 108 N VAL A 47 SHEET 5 A 5 GLU A 114 ILE A 119 -1 O VAL A 116 N LEU A 109 SHEET 1 B 5 GLU D 26 GLU D 27 0 SHEET 2 B 5 ASN D 77 PHE D 82 1 O THR D 78 N GLU D 26 SHEET 3 B 5 THR D 44 ASN D 50 1 N ASN D 50 O VAL D 81 SHEET 4 B 5 SER D 106 LYS D 111 -1 O ALA D 108 N VAL D 47 SHEET 5 B 5 GLU D 114 ILE D 119 -1 O VAL D 116 N LEU D 109 SHEET 1 C 5 GLU E 26 GLU E 27 0 SHEET 2 C 5 ASN E 77 PHE E 82 1 O THR E 78 N GLU E 26 SHEET 3 C 5 THR E 44 ASN E 50 1 N LEU E 46 O VAL E 79 SHEET 4 C 5 SER E 106 LYS E 111 -1 O LEU E 110 N THR E 45 SHEET 5 C 5 GLU E 114 ILE E 119 -1 O ILE E 119 N MET E 107 SHEET 1 D 5 GLU F 26 GLU F 27 0 SHEET 2 D 5 ASN F 77 PHE F 82 1 O THR F 80 N GLU F 26 SHEET 3 D 5 THR F 44 ASN F 50 1 N ASN F 50 O VAL F 81 SHEET 4 D 5 SER F 106 LYS F 111 -1 O ALA F 108 N VAL F 47 SHEET 5 D 5 GLU F 114 ILE F 119 -1 O ILE F 119 N MET F 107 CISPEP 1 SER A 104 PRO A 105 0 -3.96 CISPEP 2 SER D 104 PRO D 105 0 -5.03 CISPEP 3 SER E 104 PRO E 105 0 -2.11 CISPEP 4 SER F 104 PRO F 105 0 -4.77 SITE 1 AC1 5 GLN D 85 LYS D 87 GLU D 88 HOH D 154 SITE 2 AC1 5 HOH D 170 SITE 1 AC2 6 GLN A 85 ASP A 86 LYS A 87 GLU A 88 SITE 2 AC2 6 HOH A 162 HOH A 203 SITE 1 AC3 6 ALA A 83 ARG A 94 SER A 104 HOH A 170 SITE 2 AC3 6 HOH A 173 HOH A 225 SITE 1 AC4 6 LYS D 87 HOH D 175 CYS E 53 GLY E 54 SITE 2 AC4 6 CYS E 55 ARG E 121 SITE 1 AC5 2 ARG E 94 SER E 104 SITE 1 AC6 5 CYS D 53 GLY D 54 CYS D 55 ARG D 121 SITE 2 AC6 5 LYS E 87 SITE 1 AC7 5 GLN E 85 LYS E 87 GLU E 88 HOH E 154 SITE 2 AC7 5 HOH E 179 SITE 1 AC8 6 VAL A 116 HIS A 117 HIS A 143 HOH A 182 SITE 2 AC8 6 HOH A 187 SER E -2 SITE 1 AC9 8 ASP E 72 LYS E 73 HOH E 172 HOH E 185 SITE 2 AC9 8 GLY F 84 ARG F 94 HOH F 167 HOH F 171 SITE 1 BC1 3 ARG D 94 SER D 104 HOH D 195 SITE 1 BC2 3 ASP F 86 LYS F 87 GLU F 88 SITE 1 BC3 6 ARG D 18 THR D 21 CYS F 53 GLY F 54 SITE 2 BC3 6 ARG F 121 HOH F 155 CRYST1 68.161 68.161 302.024 90.00 90.00 90.00 P 41 21 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014671 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014671 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003311 0.00000