HEADER TRANSFERASE 10-DEC-08 3FI2 TITLE CRYSTAL STRUCTURE OF JNK3 WITH AMINO-PYRAZOLE INHIBITOR, SR-3451 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MITOGEN-ACTIVATED PROTEIN KINASE 10; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 39-402; COMPND 5 SYNONYM: STRESS-ACTIVATED PROTEIN KINASE JNK3, C-JUN N-TERMINAL COMPND 6 KINASE 3, MAP KINASE P49 3F12; COMPND 7 EC: 2.7.11.24; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: JNK3, JNK3A, MAPK10, PRKM10; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PDEST14 KEYWDS JNK3, PROTEIN-INHIBITOR COMPLEX, ALTERNATIVE SPLICING, ATP-BINDING, KEYWDS 2 CHROMOSOMAL REARRANGEMENT, CYTOPLASM, EPILEPSY, KINASE, NUCLEOTIDE- KEYWDS 3 BINDING, PHOSPHOPROTEIN, SERINE/THREONINE-PROTEIN KINASE, KEYWDS 4 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.E.HABEL REVDAT 3 06-SEP-23 3FI2 1 REMARK LINK REVDAT 2 23-JUN-09 3FI2 1 JRNL REVDAT 1 03-MAR-09 3FI2 0 JRNL AUTH T.KAMENECKA,J.HABEL,D.DUCKETT,W.CHEN,Y.Y.LING,B.FRACKOWIAK, JRNL AUTH 2 R.JIANG,Y.SHIN,X.SONG,P.LOGRASSO JRNL TITL STRUCTURE-ACTIVITY RELATIONSHIPS AND X-RAY STRUCTURES JRNL TITL 2 DESCRIBING THE SELECTIVITY OF AMINOPYRAZOLE INHIBITORS FOR JRNL TITL 3 C-JUN N-TERMINAL KINASE 3 (JNK3) OVER P38. JRNL REF J.BIOL.CHEM. V. 284 12853 2009 JRNL REFN ISSN 0021-9258 JRNL PMID 19261605 JRNL DOI 10.1074/JBC.M809430200 REMARK 2 REMARK 2 RESOLUTION. 2.28 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.28 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.23 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.260 REMARK 3 COMPLETENESS FOR RANGE (%) : 85.9 REMARK 3 NUMBER OF REFLECTIONS : 14193 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1419 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.2382 - 4.9208 0.99 1568 175 0.1710 0.2481 REMARK 3 2 4.9208 - 3.9064 0.99 1489 165 0.1371 0.2078 REMARK 3 3 3.9064 - 3.4128 0.93 1386 155 0.1445 0.2312 REMARK 3 4 3.4128 - 3.1008 0.99 1464 161 0.1666 0.2677 REMARK 3 5 3.1008 - 2.8786 0.97 1438 160 0.1951 0.3241 REMARK 3 6 2.8786 - 2.7089 0.95 1410 158 0.2047 0.2834 REMARK 3 7 2.7089 - 2.5733 0.91 1325 146 0.2101 0.3008 REMARK 3 8 2.5733 - 2.4613 0.82 1215 136 0.2055 0.2925 REMARK 3 9 2.4613 - 2.3665 0.64 933 103 0.2244 0.3273 REMARK 3 10 2.3665 - 2.2800 0.37 546 60 0.2354 0.3037 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.32 REMARK 3 B_SOL : 50.07 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.380 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.55 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 NULL REMARK 3 ANGLE : 1.194 NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : 18.901 NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND RESID 45:96) REMARK 3 ORIGIN FOR THE GROUP (A): 10.4761 47.6095 13.0478 REMARK 3 T TENSOR REMARK 3 T11: 0.1110 T22: 0.1574 REMARK 3 T33: 0.1598 T12: 0.0349 REMARK 3 T13: -0.0094 T23: 0.0287 REMARK 3 L TENSOR REMARK 3 L11: 1.4048 L22: 4.6355 REMARK 3 L33: 3.8179 L12: 0.5432 REMARK 3 L13: -0.9283 L23: 0.3827 REMARK 3 S TENSOR REMARK 3 S11: 0.0729 S12: -0.0288 S13: 0.1951 REMARK 3 S21: 0.2189 S22: 0.0676 S23: 0.5311 REMARK 3 S31: -0.1654 S32: -0.1632 S33: -0.0436 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND RESID 97:117) REMARK 3 ORIGIN FOR THE GROUP (A): 27.8613 40.4345 4.6637 REMARK 3 T TENSOR REMARK 3 T11: 0.1465 T22: 0.3347 REMARK 3 T33: 0.4012 T12: -0.0307 REMARK 3 T13: -0.0689 T23: -0.0690 REMARK 3 L TENSOR REMARK 3 L11: -0.8897 L22: 3.7319 REMARK 3 L33: 3.7927 L12: 0.0517 REMARK 3 L13: -1.3455 L23: 1.0245 REMARK 3 S TENSOR REMARK 3 S11: 0.1606 S12: -0.5074 S13: -0.0812 REMARK 3 S21: 0.3662 S22: 0.0655 S23: -0.8813 REMARK 3 S31: 0.6075 S32: 0.2398 S33: -0.2167 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND RESID 118:151) REMARK 3 ORIGIN FOR THE GROUP (A): 16.7503 44.1187 4.9553 REMARK 3 T TENSOR REMARK 3 T11: 0.1417 T22: 0.1782 REMARK 3 T33: 0.1427 T12: -0.0465 REMARK 3 T13: -0.0335 T23: -0.0327 REMARK 3 L TENSOR REMARK 3 L11: 0.4584 L22: 3.2003 REMARK 3 L33: 2.5713 L12: -1.1845 REMARK 3 L13: 0.0060 L23: 0.1692 REMARK 3 S TENSOR REMARK 3 S11: -0.2028 S12: 0.0279 S13: 0.1574 REMARK 3 S21: -0.3842 S22: 0.0989 S23: 0.2517 REMARK 3 S31: -0.1005 S32: 0.2527 S33: -0.0533 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND RESID 152:210) REMARK 3 ORIGIN FOR THE GROUP (A): 13.5487 23.6209 4.0683 REMARK 3 T TENSOR REMARK 3 T11: 0.0953 T22: 0.1440 REMARK 3 T33: 0.1391 T12: -0.0329 REMARK 3 T13: 0.0194 T23: -0.0660 REMARK 3 L TENSOR REMARK 3 L11: 1.1175 L22: 3.9109 REMARK 3 L33: 0.8857 L12: 0.1590 REMARK 3 L13: 0.1539 L23: 0.6042 REMARK 3 S TENSOR REMARK 3 S11: 0.0263 S12: -0.1238 S13: 0.2964 REMARK 3 S21: -0.0779 S22: -0.0110 S23: 0.6240 REMARK 3 S31: 0.0558 S32: 0.0832 S33: -0.0127 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND RESID 211:227) REMARK 3 ORIGIN FOR THE GROUP (A): 31.8605 25.6304 9.9259 REMARK 3 T TENSOR REMARK 3 T11: 0.3692 T22: 0.9636 REMARK 3 T33: 0.5183 T12: -0.2419 REMARK 3 T13: -0.0494 T23: -0.1766 REMARK 3 L TENSOR REMARK 3 L11: -0.9160 L22: 3.2546 REMARK 3 L33: 0.4076 L12: -0.7522 REMARK 3 L13: 1.4834 L23: 2.0461 REMARK 3 S TENSOR REMARK 3 S11: 0.1547 S12: -0.0958 S13: 0.1302 REMARK 3 S21: 0.2549 S22: 0.2843 S23: -0.2106 REMARK 3 S31: 0.4548 S32: 0.0644 S33: -0.1517 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN A AND RESID 228:264) REMARK 3 ORIGIN FOR THE GROUP (A): 23.6316 16.1762 7.7445 REMARK 3 T TENSOR REMARK 3 T11: 0.0884 T22: 0.3126 REMARK 3 T33: 0.0870 T12: 0.0735 REMARK 3 T13: -0.0167 T23: 0.0037 REMARK 3 L TENSOR REMARK 3 L11: 1.7604 L22: 1.9279 REMARK 3 L33: 2.4711 L12: 0.4247 REMARK 3 L13: -0.4840 L23: 0.9833 REMARK 3 S TENSOR REMARK 3 S11: -0.2993 S12: -0.4192 S13: -0.1966 REMARK 3 S21: -0.0456 S22: 0.1719 S23: -0.0474 REMARK 3 S31: 0.2730 S32: 0.8146 S33: -0.0614 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN A AND RESID 265:269) REMARK 3 ORIGIN FOR THE GROUP (A): 33.1285 16.7160 19.8824 REMARK 3 T TENSOR REMARK 3 T11: 0.3885 T22: 1.5528 REMARK 3 T33: 0.8701 T12: 0.1841 REMARK 3 T13: -0.1976 T23: 0.1903 REMARK 3 L TENSOR REMARK 3 L11: 2.5330 L22: 2.4984 REMARK 3 L33: 2.4841 L12: -0.0389 REMARK 3 L13: 1.0877 L23: 2.3106 REMARK 3 S TENSOR REMARK 3 S11: -0.1976 S12: -0.4984 S13: -0.0006 REMARK 3 S21: 0.5594 S22: 0.7126 S23: -0.2586 REMARK 3 S31: 0.4124 S32: 0.8495 S33: -0.2390 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN A AND RESID 270:362) REMARK 3 ORIGIN FOR THE GROUP (A): 22.6916 6.9502 5.6357 REMARK 3 T TENSOR REMARK 3 T11: 0.1391 T22: 0.2149 REMARK 3 T33: 0.0684 T12: 0.0958 REMARK 3 T13: -0.0052 T23: 0.0279 REMARK 3 L TENSOR REMARK 3 L11: 1.7741 L22: 3.0667 REMARK 3 L33: 2.6420 L12: 0.2228 REMARK 3 L13: 0.1965 L23: 1.1773 REMARK 3 S TENSOR REMARK 3 S11: -0.1544 S12: -0.1691 S13: -0.1715 REMARK 3 S21: 0.1424 S22: 0.1249 S23: 0.0656 REMARK 3 S31: 0.3731 S32: 0.5478 S33: 0.0393 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN A AND RESID 363:384) REMARK 3 ORIGIN FOR THE GROUP (A): 24.4080 32.1253 -8.2605 REMARK 3 T TENSOR REMARK 3 T11: 0.4685 T22: 0.5327 REMARK 3 T33: 0.4820 T12: 0.0216 REMARK 3 T13: -0.0498 T23: -0.0301 REMARK 3 L TENSOR REMARK 3 L11: -3.3131 L22: 0.5800 REMARK 3 L33: 2.1015 L12: -2.3789 REMARK 3 L13: -2.5587 L23: 0.1045 REMARK 3 S TENSOR REMARK 3 S11: 0.4077 S12: 0.4432 S13: 0.2252 REMARK 3 S21: -0.4339 S22: -0.1633 S23: -0.3155 REMARK 3 S31: 0.0411 S32: 0.0688 S33: -0.3358 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN A AND RESID 385:400) REMARK 3 ORIGIN FOR THE GROUP (A): 30.5695 49.2527 1.7059 REMARK 3 T TENSOR REMARK 3 T11: 0.5524 T22: 0.4285 REMARK 3 T33: 0.4228 T12: -0.2526 REMARK 3 T13: 0.1395 T23: -0.1371 REMARK 3 L TENSOR REMARK 3 L11: 4.4440 L22: 7.7663 REMARK 3 L33: 1.2697 L12: -3.8058 REMARK 3 L13: -3.2864 L23: 1.7541 REMARK 3 S TENSOR REMARK 3 S11: 0.2162 S12: 1.6138 S13: 0.7063 REMARK 3 S21: -2.1200 S22: 0.4420 S23: -0.8484 REMARK 3 S31: -0.0931 S32: 0.4594 S33: -0.6006 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3FI2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-DEC-08. REMARK 100 THE DEPOSITION ID IS D_1000050617. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-AUG-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SIDE-SCATTERING CUBEROOT I-BEAM REMARK 200 BENT SINGLE CRYSTAL, ASYMETRIC REMARK 200 CUT 12.2 DEG REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14193 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.280 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 12.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05700 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.28 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX (AUTOMR) REMARK 200 STARTING MODEL: PDB ENTRY 1JNK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10MG/ML JNK3 MIXED WITH 1MM AMP-PCP, REMARK 280 2MM MGCL2, 0.4MM ZWITTERGENT 3-14, 10% ETHYLENE. CRYSTALS GROWN REMARK 280 IN 0.2M NACL, 0.1M BIS-TRIS, 28-31% PEG 3350, PH 5.5, MICROBATCH, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 34.50600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 34.50600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 41.34700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 62.26250 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 41.34700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 62.26250 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 34.50600 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 41.34700 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 62.26250 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 34.50600 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 41.34700 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 62.26250 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 22 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 39 REMARK 465 SER A 40 REMARK 465 LYS A 41 REMARK 465 SER A 42 REMARK 465 LYS A 43 REMARK 465 VAL A 44 REMARK 465 GLY A 71 REMARK 465 SER A 72 REMARK 465 GLY A 73 REMARK 465 ALA A 74 REMARK 465 GLN A 75 REMARK 465 THR A 213 REMARK 465 ALA A 214 REMARK 465 GLY A 215 REMARK 465 THR A 216 REMARK 465 SER A 217 REMARK 465 PHE A 218 REMARK 465 MET A 219 REMARK 465 MET A 220 REMARK 465 THR A 221 REMARK 465 PRO A 222 REMARK 465 TYR A 223 REMARK 465 VAL A 224 REMARK 465 SER A 401 REMARK 465 GLU A 402 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 MET A 287 CA CB CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O2 EDO A 601 O2 EDO A 601 4555 0.35 REMARK 500 C1 EDO A 601 O1 EDO A 601 4555 0.49 REMARK 500 C1 EDO A 601 C1 EDO A 601 4555 0.96 REMARK 500 C2 EDO A 601 O2 EDO A 601 4555 1.18 REMARK 500 O1 EDO A 601 C2 EDO A 601 4555 1.54 REMARK 500 C2 EDO A 601 C2 EDO A 601 4555 1.88 REMARK 500 O1 EDO A 601 O1 EDO A 601 4555 1.90 REMARK 500 C1 EDO A 601 C2 EDO A 601 4555 2.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 188 -7.49 73.20 REMARK 500 ARG A 188 -5.77 71.68 REMARK 500 ASP A 321 -52.94 91.42 REMARK 500 ARG A 383 141.62 -170.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE JK1 A 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 601 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3FI3 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF JNK3 WITH INDAZOLE INHIBITOR, SR-3737 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE STRUCTURE IS DISORDERED IN THE RESIDUE RANGE 364-380. REMARK 999 (DPAEVEAPPPQIYDKQL). ONLY SIX RESIDUES WERE OBSERVED IN REMARK 999 THIS REGION AND THEY HAVE BEEN DENOTED AS UNK, SINCE THE REMARK 999 AUTHORS COULD NOT DETERMINE WHICH AMINO ACIDS THEY REMARK 999 CORRESPOND TO IN THIS REGION. THEY WERE ORIGINALLY MODELED REMARK 999 AS ALA. DBREF 3FI2 A 39 402 UNP P53779 MK10_HUMAN 39 402 SEQADV 3FI2 A UNP P53779 ASP 364 SEE REMARK 999 SEQADV 3FI2 A UNP P53779 PRO 365 SEE REMARK 999 SEQADV 3FI2 A UNP P53779 ALA 366 SEE REMARK 999 SEQADV 3FI2 A UNP P53779 GLU 367 SEE REMARK 999 SEQADV 3FI2 A UNP P53779 VAL 368 SEE REMARK 999 SEQADV 3FI2 A UNP P53779 GLU 369 SEE REMARK 999 SEQADV 3FI2 A UNP P53779 ALA 370 SEE REMARK 999 SEQADV 3FI2 A UNP P53779 PRO 371 SEE REMARK 999 SEQADV 3FI2 A UNP P53779 PRO 372 SEE REMARK 999 SEQADV 3FI2 A UNP P53779 PRO 373 SEE REMARK 999 SEQADV 3FI2 A UNP P53779 GLN 374 SEE REMARK 999 SEQADV 3FI2 UNK A 500 UNP P53779 ILE 375 SEE REMARK 999 SEQADV 3FI2 UNK A 501 UNP P53779 TYR 376 SEE REMARK 999 SEQADV 3FI2 UNK A 502 UNP P53779 ASP 377 SEE REMARK 999 SEQADV 3FI2 UNK A 503 UNP P53779 LYS 378 SEE REMARK 999 SEQADV 3FI2 UNK A 504 UNP P53779 GLN 379 SEE REMARK 999 SEQADV 3FI2 UNK A 505 UNP P53779 LEU 380 SEE REMARK 999 SEQRES 1 A 353 MET SER LYS SER LYS VAL ASP ASN GLN PHE TYR SER VAL SEQRES 2 A 353 GLU VAL GLY ASP SER THR PHE THR VAL LEU LYS ARG TYR SEQRES 3 A 353 GLN ASN LEU LYS PRO ILE GLY SER GLY ALA GLN GLY ILE SEQRES 4 A 353 VAL CYS ALA ALA TYR ASP ALA VAL LEU ASP ARG ASN VAL SEQRES 5 A 353 ALA ILE LYS LYS LEU SER ARG PRO PHE GLN ASN GLN THR SEQRES 6 A 353 HIS ALA LYS ARG ALA TYR ARG GLU LEU VAL LEU MET LYS SEQRES 7 A 353 OCY VAL ASN HIS LYS ASN ILE ILE SER LEU LEU ASN VAL SEQRES 8 A 353 PHE THR PRO GLN LYS THR LEU GLU GLU PHE GLN ASP VAL SEQRES 9 A 353 TYR LEU VAL MET GLU LEU MET ASP ALA ASN LEU CYS GLN SEQRES 10 A 353 VAL ILE GLN MET GLU LEU ASP HIS GLU ARG MET SER TYR SEQRES 11 A 353 LEU LEU TYR GLN MET LEU CYS GLY ILE LYS HIS LEU HIS SEQRES 12 A 353 SER ALA GLY ILE ILE HIS ARG ASP LEU LYS PRO SER ASN SEQRES 13 A 353 ILE VAL VAL LYS SER ASP OCY THR LEU LYS ILE LEU ASP SEQRES 14 A 353 PHE GLY LEU ALA ARG THR ALA GLY THR SER PHE MET MET SEQRES 15 A 353 THR PRO TYR VAL VAL THR ARG TYR TYR ARG ALA PRO GLU SEQRES 16 A 353 VAL ILE LEU GLY MET GLY TYR LYS GLU ASN VAL ASP ILE SEQRES 17 A 353 TRP SER VAL GLY CYS ILE MET GLY GLU MET VAL ARG HIS SEQRES 18 A 353 LYS ILE LEU PHE PRO GLY ARG ASP TYR ILE ASP GLN TRP SEQRES 19 A 353 ASN LYS VAL ILE GLU GLN LEU GLY THR PRO CYS PRO GLU SEQRES 20 A 353 PHE MET LYS LYS LEU GLN PRO THR VAL ARG ASN TYR VAL SEQRES 21 A 353 GLU ASN ARG PRO LYS TYR ALA GLY LEU THR PHE PRO LYS SEQRES 22 A 353 LEU PHE PRO ASP SER LEU PHE PRO ALA ASP SER GLU HIS SEQRES 23 A 353 ASN LYS LEU LYS ALA SER GLN ALA ARG ASP LEU LEU SER SEQRES 24 A 353 LYS MET LEU VAL ILE ASP PRO ALA LYS ARG ILE SER VAL SEQRES 25 A 353 ASP ASP ALA LEU GLN HIS PRO TYR ILE ASN VAL TRP TYR SEQRES 26 A 353 UNK UNK UNK UNK UNK UNK ASP GLU ARG GLU HIS THR ILE SEQRES 27 A 353 GLU GLU TRP LYS GLU LEU ILE TYR LYS GLU VAL MET ASN SEQRES 28 A 353 SER GLU MODRES 3FI2 OCY A 117 CYS HYDROXYETHYLCYSTEINE MODRES 3FI2 OCY A 201 CYS HYDROXYETHYLCYSTEINE HET OCY A 117 9 HET OCY A 201 9 HET JK1 A 600 36 HET EDO A 601 4 HETNAM OCY HYDROXYETHYLCYSTEINE HETNAM JK1 3-{4-[(PHENYLCARBAMOYL)AMINO]-1H-PYRAZOL-1-YL}-N-(3,4, HETNAM 2 JK1 5-TRIMETHOXYPHENYL)BENZAMIDE HETNAM EDO 1,2-ETHANEDIOL HETSYN JK1 3-(4-(3-PHENYLUREIDO)-1H-PYRAZOL-1-YL)-N-(3,4,5- HETSYN 2 JK1 TRIMETHOXYPHENYL)BENZAMIDE HETSYN EDO ETHYLENE GLYCOL FORMUL 1 OCY 2(C5 H11 N O3 S) FORMUL 2 JK1 C26 H25 N5 O5 FORMUL 3 EDO C2 H6 O2 FORMUL 4 HOH *155(H2 O) HELIX 1 1 ASN A 101 VAL A 118 1 18 HELIX 2 2 LEU A 153 GLN A 158 1 6 HELIX 3 3 ASP A 162 ALA A 183 1 22 HELIX 4 4 LYS A 191 SER A 193 5 3 HELIX 5 5 ALA A 231 LEU A 236 1 6 HELIX 6 6 ASN A 243 HIS A 259 1 17 HELIX 7 7 ILE A 269 GLY A 280 1 12 HELIX 8 8 CYS A 283 LYS A 288 1 6 HELIX 9 9 GLN A 291 ASN A 300 1 10 HELIX 10 10 THR A 308 PHE A 313 1 6 HELIX 11 11 PRO A 314 PHE A 318 5 5 HELIX 12 12 SER A 322 LEU A 340 1 19 HELIX 13 13 ASP A 343 ARG A 347 5 5 HELIX 14 14 SER A 349 HIS A 356 1 8 HELIX 15 15 ILE A 359 TYR A 363 5 5 HELIX 16 16 THR A 386 ASN A 400 1 15 SHEET 1 A 2 PHE A 48 VAL A 53 0 SHEET 2 A 2 SER A 56 LEU A 61 -1 O PHE A 58 N VAL A 51 SHEET 1 B 5 TYR A 64 PRO A 69 0 SHEET 2 B 5 VAL A 78 ASP A 83 -1 O ALA A 80 N LYS A 68 SHEET 3 B 5 ARG A 88 SER A 96 -1 O VAL A 90 N ALA A 81 SHEET 4 B 5 ASP A 141 GLU A 147 -1 O VAL A 142 N LEU A 95 SHEET 5 B 5 ASN A 128 PHE A 130 -1 N ASN A 128 O VAL A 145 SHEET 1 C 3 ALA A 151 ASN A 152 0 SHEET 2 C 3 ILE A 195 VAL A 197 -1 O VAL A 197 N ALA A 151 SHEET 3 C 3 LEU A 203 ILE A 205 -1 O LYS A 204 N VAL A 196 LINK C LYS A 116 N OCY A 117 1555 1555 1.33 LINK C OCY A 117 N VAL A 118 1555 1555 1.33 LINK C ASP A 200 N OCY A 201 1555 1555 1.29 LINK C OCY A 201 N THR A 202 1555 1555 1.34 SITE 1 AC1 15 LYS A 68 VAL A 78 ALA A 91 LYS A 93 SITE 2 AC1 15 ILE A 124 LEU A 144 MET A 146 GLU A 147 SITE 3 AC1 15 LEU A 148 MET A 149 ASP A 150 ALA A 151 SITE 4 AC1 15 ASN A 152 VAL A 196 LEU A 206 SITE 1 AC2 4 HOH A 22 CYS A 283 PRO A 284 GLU A 285 CRYST1 82.694 124.525 69.012 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012093 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008031 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014490 0.00000